Package evaluation of YAXArrayBase on Julia 1.13.0-DEV.692 (1ea959a8b1*) started at 2025-06-03T13:37:57.055 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.33s ################################################################################ # Installation # Installing YAXArrayBase... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [90b8fcef] + YAXArrayBase v0.7.6 Updating `~/.julia/environments/v1.13/Manifest.toml` [34da2185] + Compat v4.16.0 [864edb3b] + DataStructures v0.18.22 [bac558e1] + OrderedCollections v1.8.1 [90b8fcef] + YAXArrayBase v0.7.6 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [8f399da3] + Libdl v1.11.0 [d6f4376e] + Markdown v1.11.0 [ca575930] + NetworkOptions v1.3.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [deac9b47] + LibCURL_jll v8.12.1+1 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [458c3c95] + OpenSSL_jll v3.5.0+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850ede] + nghttp2_jll v1.65.0+0 Installation completed after 3.54s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 48.79s ################################################################################ # Testing # Testing YAXArrayBase Status `/tmp/jl_CusTUl/Project.toml` [c9ce4bd3] ArchGDAL v0.10.8 [39de3d68] AxisArrays v0.4.7 [94b1ba4f] AxisKeys v0.2.15 [0703355e] DimensionalData v0.29.17 [356022a1] NamedDims v1.2.2 [30363a11] NetCDF v0.12.2 [f8b46487] TestItemRunner v1.1.0 [1c621080] TestItems v1.0.0 [90b8fcef] YAXArrayBase v0.7.6 [0a941bbe] Zarr v0.9.4 [f43a241f] Downloads v1.7.0 [44cfe95a] Pkg v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_CusTUl/Manifest.toml` [fbe9abb3] AWS v1.92.1 ⌅ [1c724243] AWSS3 v0.10.4 [79e6a3ab] Adapt v4.3.0 [c9ce4bd3] ArchGDAL v0.10.8 [dce04be8] ArgCheck v2.5.0 [4fba245c] ArrayInterface v7.19.0 [31f734f8] ArrowTypes v2.3.0 [39de3d68] AxisArrays v0.4.7 [94b1ba4f] AxisKeys v0.2.15 [d1d4a3ce] BitFlags v0.1.9 [a74b3585] Blosc v0.7.3 [fa961155] CEnum v0.5.0 [6309b1aa] CodecInflate64 v0.1.3 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [34da2185] Compat v4.16.0 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.5.8 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [0703355e] DimensionalData v0.29.17 [3c3547ce] DiskArrays v0.4.13 [460bff9d] ExceptionUnwrapping v0.1.11 [e2ba6199] ExprTools v0.1.10 [411431e0] Extents v0.1.6 [8f5d6c58] EzXML v1.2.1 [48062228] FilePathsBase v0.9.24 [53c48c17] FixedPointNumbers v0.8.5 [add2ef01] GDAL v1.10.0 [68eda718] GeoFormatTypes v0.4.4 [cf35fbd7] GeoInterface v1.4.1 [0edc0954] GeoInterfaceMakie v0.1.9 [0329782f] GeoInterfaceRecipes v1.0.2 [5c1252a2] GeometryBasics v0.5.9 [bc5e4493] GitHub v5.9.0 [cd3eb016] HTTP v1.10.16 [a09fc81d] ImageCore v0.10.5 [83e8ac13] IniFile v0.5.1 [0c81fc1b] InputBuffers v1.0.1 [85a1e053] Interfaces v0.3.2 [8197267c] IntervalSets v0.7.11 [41ab1584] InvertedIndices v1.3.1 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [8ac3fa9e] LRUCache v1.6.2 [e6f89c97] LoggingExtras v1.1.0 [3da0fdf6] MPIPreferences v0.1.11 [20f20a25] MakieCore v0.9.4 [dbb5928d] MappedArrays v0.4.2 [739be429] MbedTLS v1.1.9 ⌅ [78c3b35d] Mocking v0.7.9 [e94cdb99] MosaicViews v0.3.4 [356022a1] NamedDims v1.2.2 [30363a11] NetCDF v0.12.2 [510215fc] Observables v0.5.5 [6fe1bfb0] OffsetArrays v1.17.0 [4d8831e6] OpenSSL v1.5.0 [bac558e1] OrderedCollections v1.8.1 [5432bcbf] PaddedViews v0.5.12 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [b3c3ace0] RangeArrays v0.3.2 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [20febd7b] Retry v0.4.1 [777ac1f9] SimpleBufferStream v1.2.0 [2133526b] SodiumSeal v0.1.1 [cae243ae] StackViews v0.1.2 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [2da68c74] SymDict v0.3.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [62fd8b95] TensorCore v0.1.1 [f8b46487] TestItemRunner v1.1.0 [1c621080] TestItems v1.0.0 [3bb67fe8] TranscodingStreams v0.11.3 [5c2747f8] URIs v1.5.2 [228000da] XMLDict v0.4.1 [90b8fcef] YAXArrayBase v0.7.6 [0a941bbe] Zarr v0.9.4 [49080126] ZipArchives v2.4.1 ⌅ [8ce61222] Arrow_jll v18.1.1+0 [0b7ba130] Blosc_jll v1.21.7+0 [6e34b625] Bzip2_jll v1.0.9+0 [5ae413db] EarCut_jll v2.2.4+0 [2e619515] Expat_jll v2.6.5+0 ⌅ [a7073274] GDAL_jll v302.1000.300+0 [d604d12d] GEOS_jll v3.13.1+1 [59f7168a] Giflib_jll v5.2.3+0 [818ab7a1] HDF4_jll v4.3.1+0 [0234f1f7] HDF5_jll v1.14.6+0 [e33a78d0] Hwloc_jll v2.12.1+0 [a51ab1cf] ICU_jll v76.2.0+0 [aacddb02] JpegTurbo_jll v3.1.1+0 [b39eb1a6] Kerberos_krb5_jll v1.21.3+0 [88015f11] LERC_jll v4.0.1+0 [08be9ffa] LibPQ_jll v16.8.0+0 [7e76a0d4] Libglvnd_jll v1.7.1+1 [94ce4f54] Libiconv_jll v1.18.0+0 [89763e89] Libtiff_jll v4.7.1+0 [d3a379c0] LittleCMS_jll v2.16.0+0 [5ced341a] Lz4_jll v1.10.1+0 [7cb0a576] MPICH_jll v4.3.0+1 [f1f71cc9] MPItrampoline_jll v5.5.3+0 [c8ffd9c3] MbedTLS_jll v2.28.6+2 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [7243133f] NetCDF_jll v401.900.300+0 [643b3616] OpenJpeg_jll v2.5.4+0 [fe0851c0] OpenMPI_jll v5.0.7+2 [58948b4f] PROJ_jll v902.600.0+0 [784f63db] Qhull_jll v10008.0.1004+0 [76ed43ae] SQLite_jll v3.48.0+0 ⌃ [e0b8ae26] Thrift_jll v0.21.0+0 ⌅ [02c8fc9c] XML2_jll v2.13.6+1 [ffd25f8a] XZ_jll v5.8.1+0 [4f6342f7] Xorg_libX11_jll v1.8.12+0 [0c0b7dd1] Xorg_libXau_jll v1.0.13+0 [a3789734] Xorg_libXdmcp_jll v1.1.6+0 [1082639a] Xorg_libXext_jll v1.3.7+0 [c7cfdc94] Xorg_libxcb_jll v1.17.1+0 [c5fb5394] Xorg_xtrans_jll v1.6.0+0 ⌅ [28df3c45] boost_jll v1.79.0+3 [4611771a] brotli_jll v1.1.1+0 [477f73a3] libaec_jll v1.1.3+0 [06c338fa] libgeotiff_jll v100.702.400+0 [b53b4c65] libpng_jll v1.6.48+0 [a9144af2] libsodium_jll v1.0.21+0 [c5f90fcd] libwebp_jll v1.5.0+0 [337d8026] libzip_jll v1.11.3+0 [fe1e1685] snappy_jll v1.2.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.12.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.0+0 [efcefdf7] PCRE2_jll v10.44.0+1 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... 6154.2 ms ✓ YAXArrayBase → NetCDFExt 1 dependency successfully precompiled in 6 seconds. 58 already precompiled. Precompiling packages... 1042.1 ms ✓ Mocking 1403.9 ms ✓ XMLDict 6816.0 ms ✓ AWS 6938.2 ms ✓ AWSS3 Info Given Zarr was explicitly requested, output will be shown live  WARNING: Constructor for type "UInt8" was extended in `Zarr` without explicit qualification or import.  NOTE: Assumed "UInt8" refers to `Base.UInt8`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function UInt8 end`.  Hint: To silence the warning, qualify `UInt8` as `Base.UInt8` in the method signature or explicitly `import Base: UInt8`. 23925.4 ms ✓ Zarr 5 dependencies successfully precompiled in 42 seconds. 79 already precompiled. 1 dependency had output during precompilation: ┌ Zarr │ [Output was shown above] └ Precompiling packages... 9663.1 ms ✓ YAXArrayBase → ZarrExt 1 dependency successfully precompiled in 10 seconds. 85 already precompiled. Precompiling packages... 1453.1 ms ✓ GEOS_jll 1424.5 ms ✓ snappy_jll 1487.3 ms ✓ Qhull_jll 1434.4 ms ✓ brotli_jll 1538.4 ms ✓ GeoInterfaceRecipes 1490.0 ms ✓ HDF4_jll 1664.3 ms ✓ boost_jll 1825.2 ms ✓ PROJ_jll 5710.2 ms ✓ GeoInterfaceMakie 1403.7 ms ✓ Thrift_jll 1518.0 ms ✓ libgeotiff_jll 1466.5 ms ✓ Arrow_jll 5752.2 ms ✓ GDAL_jll 10006.2 ms ✓ GDAL 33587.5 ms ✓ ArchGDAL 15 dependencies successfully precompiled in 73 seconds. 112 already precompiled. Precompiling packages... 10999.0 ms ✓ YAXArrayBase → ArchGDALExt 1 dependency successfully precompiled in 12 seconds. 132 already precompiled. Test Summary: | Pass Total Time Datasets | 54 54 4m13.5s Precompiling packages... 7678.3 ms ✓ AxisKeys 5244.6 ms ✓ AxisKeys → StatisticsExt 2 dependencies successfully precompiled in 13 seconds. 36 already precompiled. Precompiling packages... 5372.9 ms ✓ YAXArrayBase → NamedDimsExt 1 dependency successfully precompiled in 6 seconds. 33 already precompiled. Precompiling packages... 5639.0 ms ✓ YAXArrayBase → AxisKeysExt 1 dependency successfully precompiled in 6 seconds. 44 already precompiled. Precompiling packages... 5263.2 ms ✓ AxisKeys → OffsetArraysExt 1 dependency successfully precompiled in 5 seconds. 39 already precompiled. Precompiling packages... 2418.3 ms ✓ YAXArrayBase → AxisArraysExt 1 dependency successfully precompiled in 3 seconds. 30 already precompiled. Precompiling packages... Info Given DimensionalData was explicitly requested, output will be shown live  WARNING: Detected access to binding `Dimensions.X` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `Dimensions.Y` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `DimensionalData.DimArray` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `Dimensions.Z` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: `dimsymbols(x)` is deprecated, use `dimsymbol(x)` instead. │ caller = show(io::IOContext{IOBuffer}, mime::MIME{Symbol("text/plain")}, x::DimensionalData.ShowWith; kw::Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}) at show.jl:282 └ @ Core ~/.julia/packages/DimensionalData/KlTtO/src/array/show.jl:282 ┌ Warning: `dimsymbols(x)` is deprecated, use `dimsymbol(x)` instead. │ caller = show(io::IOContext{IOBuffer}, mime::MIME{Symbol("text/plain")}, x::DimensionalData.ShowWith; kw::Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}) at show.jl:284 └ @ Core ~/.julia/packages/DimensionalData/KlTtO/src/array/show.jl:284 WARNING: Detected access to binding `DimensionalData.DimStack` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. 32105.8 ms ✓ DimensionalData 1 dependency successfully precompiled in 32 seconds. 34 already precompiled. 1 dependency had output during precompilation: ┌ DimensionalData │ [Output was shown above] └ Precompiling packages... 5437.7 ms ✓ AxisKeys → InvertedIndicesExt 1 dependency successfully precompiled in 6 seconds. 39 already precompiled. Precompiling packages... 4010.2 ms ✓ YAXArrayBase → DimensionalDataExt 1 dependency successfully precompiled in 4 seconds. 54 already precompiled. Precompiling packages... 3063.7 ms ✓ DimensionalData → DimensionalDataDiskArraysExt 1 dependency successfully precompiled in 3 seconds. 41 already precompiled. DimensionalData: Test Failed at /home/pkgeval/.julia/packages/YAXArrayBase/lAdRh/test/arrays.jl:54 Expression: dimvals(d, 2) == 1.5:0.5:3.0 Evaluated: [-2.7689093127225923e-306, -2.76756125560564e-306, -2.7662131984886876e-306, -2.7648651413717352e-306, -2.763517084254783e-306, -2.7621690271378305e-306, -2.7608209700208782e-306, -2.7594729129039258e-306, -2.7581248557869735e-306, -2.756776798670021e-306 … 1.781156640666236e-295, 1.7811566406662494e-295, 1.7811566406662629e-295, 1.7811566406662763e-295, 1.7811566406662898e-295, 1.7811566406663033e-295, 1.7811566406663167e-295, 1.7811566406663302e-295, 1.7811566406663437e-295, 1.7811566406663572e-295] == 1.5:0.5:3.0 Stacktrace: [1] top-level scope @ ~/.julia/packages/YAXArrayBase/lAdRh/test/arrays.jl:518 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:730 [inlined] Test Summary: | Pass Fail Total Time Package | 46 1 47 1m37.1s test/arrays.jl | 46 1 47 1m37.1s AxisKeys | 5 5 32.4s AxisArrays | 5 5 4.5s NamedTuples | 5 5 0.3s NamedDims | 3 3 0.3s DimensionalData | 5 1 6 56.7s ArchGDAL | 23 23 3.0s ERROR: LoadError: Some tests did not pass: 46 passed, 1 failed, 0 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/YAXArrayBase/lAdRh/test/runtests.jl:8 Testing failed after 410.36s ERROR: LoadError: Package YAXArrayBase errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2421 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2276 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:498 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:309 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:324 [12] _start() @ Base ./client.jl:557 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 493.42s: package has test failures