Package evaluation of ClimaUtilities on Julia 1.13.0-DEV.680 (905a44b8ef*) started at 2025-06-01T12:24:51.546 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.47s ################################################################################ # Installation # Installing ClimaUtilities... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [b3f4f4ca] + ClimaUtilities v0.1.24 Updating `~/.julia/environments/v1.13/Manifest.toml` [79e6a3ab] + Adapt v4.3.0 [3a4d1b5c] + ClimaComms v0.6.7 [b3f4f4ca] + ClimaUtilities v0.1.24 [e6f89c97] + LoggingExtras v1.1.0 [ae029012] + Requires v1.3.1 [56f22d72] + Artifacts v1.11.0 [ade2ca70] + Dates v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [8e850b90] + libblastrampoline_jll v5.12.0+0 Installation completed after 3.61s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 1052.64s ################################################################################ # Testing # Testing ClimaUtilities Status `/tmp/jl_kOPACO/Project.toml` [4c88cf16] Aqua v0.8.13 ⌅ [179af706] CFTime v0.1.4 [3a4d1b5c] ClimaComms v0.6.7 [d414da3d] ClimaCore v0.14.34 [d934ef94] ClimaCoreTempestRemap v0.3.18 [595c0a79] ClimaTimeSteppers v0.8.5 [b3f4f4ca] ClimaUtilities v0.1.24 [e30172f5] Documenter v1.11.4 ⌃ [a98d9a8b] Interpolations v0.15.1 [98e50ef6] JuliaFormatter v2.1.2 [85f8d34a] NCDatasets v0.14.8 [1bc83da4] SafeTestsets v0.1.0 [0bca4576] SciMLBase v2.96.0 [56f22d72] Artifacts v1.11.0 [ade2ca70] Dates v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [44cfe95a] Pkg v1.13.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_kOPACO/Manifest.toml` [47edcb42] ADTypes v1.14.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [4c88cf16] Aqua v0.8.13 [4fba245c] ArrayInterface v7.19.0 [4c555306] ArrayLayouts v1.11.1 [a9b6321e] Atomix v1.1.1 [13072b0f] AxisAlgorithms v1.1.0 [aae01518] BandedMatrices v1.9.4 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] BlockArrays v1.6.3 ⌅ [179af706] CFTime v0.1.4 [2a0fbf3d] CPUSummary v0.2.6 [d360d2e6] ChainRulesCore v1.25.1 [3a4d1b5c] ClimaComms v0.6.7 [d414da3d] ClimaCore v0.14.34 [d934ef94] ClimaCoreTempestRemap v0.3.18 [595c0a79] ClimaTimeSteppers v0.8.5 [b3f4f4ca] ClimaUtilities v0.1.24 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 [3da002f7] ColorTypes v0.12.1 [5ae59095] Colors v0.13.1 [1fbeeb36] CommonDataModel v0.3.8 [a80b9123] CommonMark v0.9.1 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] ConstructionBase v1.5.8 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [7445602f] CubedSphere v0.3.2 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [2b5f629d] DiffEqBase v6.175.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [3c3547ce] DiskArrays v0.4.12 [ffbed154] DocStringExtensions v0.9.4 [e30172f5] Documenter v1.11.4 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.10 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [a4df4552] FastPower v1.1.2 [1a297f60] FillArrays v1.13.0 [53c48c17] FixedPointNumbers v0.8.5 [f6369f11] ForwardDiff v1.0.1 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [46192b85] GPUArraysCore v0.2.0 [d54b0c1a] GaussQuadrature v0.5.8 [88fa7841] GilbertCurves v0.1.0 [d7ba0133] Git v1.4.0 [c27321d9] Glob v1.3.1 [f67ccb44] HDF5 v0.17.2 [b5f81e59] IOCapture v0.2.5 [615f187c] IfElse v0.1.1 ⌃ [a98d9a8b] Interpolations v0.15.1 [8197267c] IntervalSets v0.7.11 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [ae98c720] Jieko v0.2.1 [98e50ef6] JuliaFormatter v2.1.2 ⌅ [70703baa] JuliaSyntax v0.4.10 [63c18a36] KernelAbstractions v0.9.34 [ba0b0d4f] Krylov v0.10.1 ⌅ [0b1a1467] KrylovKit v0.8.3 [8ac3fa9e] LRUCache v1.6.2 [b964fa9f] LaTeXStrings v1.4.0 [10f19ff3] LayoutPointers v0.1.17 [0e77f7df] LazilyInitializedFields v1.3.0 [9dccce8e] LazyBroadcast v1.0.0 [5c8ed15e] LinearOperators v2.10.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e6f89c97] LoggingExtras v1.1.0 [3da0fdf6] MPIPreferences v0.1.11 [1914dd2f] MacroTools v0.5.16 [d125e4d3] ManualMemory v0.1.8 [d0879d2d] MarkdownAST v0.1.2 [2e0e35c7] Moshi v0.3.5 [46d2c3a1] MuladdMacro v0.2.4 [c3c07f87] MultiBroadcastFusion v0.3.3 [85f8d34a] NCDatasets v0.14.8 [5da4648a] NVTX v1.0.0 [77ba4419] NaNMath v1.1.3 [6fe1bfb0] OffsetArrays v1.17.0 [bac558e1] OrderedCollections v1.8.1 [65ce6f38] PackageExtensionCompat v1.0.2 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [eebad327] PkgVersion v0.3.3 [f517fe37] Polyester v0.7.18 [1d0040c9] PolyesterWeave v0.2.2 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [c84ed2f1] Ratios v0.4.5 [3cdcf5f2] RecipesBase v1.3.4 [731186ca] RecursiveArrayTools v3.33.0 [189a3867] Reexport v1.2.2 [2792f1a3] RegistryInstances v0.1.0 [ae029012] Requires v1.3.1 [7181ea78] RootSolvers v0.4.4 [7e49a35a] RuntimeGeneratedFunctions v0.5.15 [94e857df] SIMDTypes v0.1.0 [1bc83da4] SafeTestsets v0.1.0 [0bca4576] SciMLBase v2.96.0 [c0aeaf25] SciMLOperators v1.3.0 [53ae85a6] SciMLStructures v1.7.0 [efcf1570] Setfield v1.1.2 [276daf66] SpecialFunctions v2.5.1 [aedffcd0] Static v1.2.0 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [7792a7ef] StrideArraysCore v0.5.7 [892a3eda] StringManipulation v0.4.1 [2efcf032] SymbolicIndexingInterface v0.3.40 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 ⌅ [6aa5eb33] TaylorSeries v0.19.1 [8290d209] ThreadingUtilities v0.5.4 [a759f4b9] TimerOutputs v0.5.29 [3bb67fe8] TranscodingStreams v0.11.3 [781d530d] TruncatedStacktraces v1.4.0 [3a884ed6] UnPack v1.0.2 [0fe1646c] UnrolledUtilities v0.1.9 [013be700] UnsafeAtomics v0.3.0 ⌅ [409d34a3] VectorInterface v0.4.9 [efce3f68] WoodburyMatrices v1.0.0 [0b7ba130] Blosc_jll v1.21.7+0 [6e34b625] Bzip2_jll v1.0.9+0 [2e619515] Expat_jll v2.6.5+0 [f8c6e375] Git_jll v2.49.0+0 ⌅ [0234f1f7] HDF5_jll v1.14.3+3 [e33a78d0] Hwloc_jll v2.12.1+0 [9c1d0b0a] JuliaNVTXCallbacks_jll v0.2.1+0 [94ce4f54] Libiconv_jll v1.18.0+0 [5ced341a] Lz4_jll v1.10.1+0 [7cb0a576] MPICH_jll v4.3.0+1 [f1f71cc9] MPItrampoline_jll v5.5.3+0 [9237b28f] MicrosoftMPI_jll v10.1.4+3 [e98f9f5b] NVTX_jll v3.1.1+0 ⌅ [7243133f] NetCDF_jll v400.902.211+1 [656ef2d0] OpenBLAS32_jll v0.3.29+0 ⌅ [fe0851c0] OpenMPI_jll v4.1.8+1 [9bd350c2] OpenSSH_jll v10.0.1+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [8573a8c5] TempestRemap_jll v2.2.0+0 ⌅ [02c8fc9c] XML2_jll v2.13.6+1 [ffd25f8a] XZ_jll v5.8.1+0 [477f73a3] libaec_jll v1.1.3+0 [337d8026] libzip_jll v1.11.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.12.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.0+0 [efcefdf7] PCRE2_jll v10.44.0+1 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter ~/.julia/packages/Documenter/iRt2s/src/utilities/utilities.jl:665 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Quality Assurance tests | 11 11 1m28.6s Test Summary: | Pass Total Time Utils tests | 50 50 2.3s ┌ Warning: Removing /home/pkgeval/.julia/packages/ClimaUtilities/OHLAs/test/jl_ShZewc/dormouse └ @ ClimaUtilities.OutputPathGenerator ~/.julia/packages/ClimaUtilities/OHLAs/src/OutputPathGenerator.jl:157 ┌ Warning: `style` as first argument was moved to a keyword argument │ caller = (::Main.var"##OutputPathGenerator tests#287".var"#26#27")(base_output_dir::String) at output_path_generator.jl:221 └ @ Core ~/.julia/packages/ClimaUtilities/OHLAs/test/output_path_generator.jl:221 ┌ Warning: `style` as first argument was moved to a keyword argument │ caller = (::Main.var"##OutputPathGenerator tests#287".var"#28#29")(base_output_dir::String) at output_path_generator.jl:236 └ @ Core ~/.julia/packages/ClimaUtilities/OHLAs/test/output_path_generator.jl:236 Test Summary: | Pass Total Time OutputPathGenerator tests | 26 26 5.7s Precompiling packages... 3009.1 ms ✓ KernelAbstractions → EnzymeExt 45428.5 ms ✓ SciMLBase 10055.7 ms ✓ FastBroadcast 8514.3 ms ✓ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt 13456.9 ms ✓ DiffEqBase 5677.6 ms ✓ DiffEqBase → DiffEqBaseSparseArraysExt Info Given ClimaTimeSteppers was explicitly requested, output will be shown live  WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl WARNING: Detected access to binding `ClimaTimeSteppers.__nvtx_domain__` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. 115349.1 ms ✓ ClimaTimeSteppers 7 dependencies successfully precompiled in 202 seconds. 137 already precompiled. 5 dependencies had output during precompilation: ┌ RecursiveArrayTools → RecursiveArrayToolsFastBroadcastExt │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl └ ┌ FastBroadcast │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl └ ┌ DiffEqBase │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl └ ┌ DiffEqBase → DiffEqBaseSparseArraysExt │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl └ ┌ ClimaTimeSteppers │ [Output was shown above] └ WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl Test Summary: | Pass Total Time TimeManager tests | 132 132 4m08.8s Test Summary: | Pass Total Time DataStructures tests | 90 90 3.3s Precompiling packages... 5014.9 ms ✓ CommonDataModel 4954.1 ms ✓ OpenMPI_jll 5852.6 ms ✓ HDF5_jll 5419.9 ms ✓ NetCDF_jll 10140.6 ms ✓ NCDatasets 5 dependencies successfully precompiled in 32 seconds. 53 already precompiled. Precompiling packages... 1258.2 ms ✓ StaticArrayInterface → StaticArrayInterfaceOffsetArraysExt 1 dependency successfully precompiled in 1 seconds. 18 already precompiled. Precompiling packages... 6043.8 ms ✓ ClimaUtilities → ClimaUtilitiesNCDatasetsExt 1 dependency successfully precompiled in 6 seconds. 64 already precompiled. Test Summary: | Pass Total Time FileReaders tests | 22 22 1m43.2s Precompiling packages... 1558.1 ms ✓ UnrolledUtilities → UnrolledUtilitiesStaticArraysExt 3209.3 ms ✓ TaylorSeries → TaylorSeriesSAExt 2525.8 ms ✓ ArrayInterface → ArrayInterfaceBandedMatricesExt 1774.9 ms ✓ GaussQuadrature 3553.1 ms ✓ TaylorSeries → TaylorSeriesRATExt 3929.9 ms ✓ RootSolvers 3447.9 ms ✓ RecursiveArrayTools → RecursiveArrayToolsForwardDiffExt 14085.0 ms ✓ HDF5 Info Given ClimaCore was explicitly requested, output will be shown live  WARNING: Detected access to binding `MatrixFields.__nvtx_domain__` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. 39386.9 ms ✓ ClimaCore 9 dependencies successfully precompiled in 74 seconds. 135 already precompiled. 1 dependency had output during precompilation: ┌ ClimaCore │ [Output was shown above] └ Precompiling packages... 6699.0 ms ✓ FastPower → FastPowerForwardDiffExt 1 dependency successfully precompiled in 7 seconds. 20 already precompiled. Precompiling packages... Info Given DiffEqBaseForwardDiffExt was explicitly requested, output will be shown live  WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl 8081.4 ms ✓ DiffEqBase → DiffEqBaseForwardDiffExt 1 dependency successfully precompiled in 8 seconds. 109 already precompiled. 1 dependency had output during precompilation: ┌ DiffEqBase → DiffEqBaseForwardDiffExt │ [Output was shown above] └ Precompiling packages... 17802.3 ms ✓ ClimaUtilities → ClimaUtilitiesClimaCoreExt 1 dependency successfully precompiled in 18 seconds. 145 already precompiled. Precompiling packages... 15737.9 ms ✓ ClimaCore → KrylovExt 1 dependency successfully precompiled in 16 seconds. 145 already precompiled. Precompiling packages... 18696.5 ms ✓ ClimaUtilities → ClimaUtilitiesClimaCoreNCDatasetsExt 1 dependency successfully precompiled in 19 seconds. 164 already precompiled. Precompiling packages... 4785.0 ms ✓ TempestRemap_jll 19861.0 ms ✓ ClimaCoreTempestRemap 2 dependencies successfully precompiled in 25 seconds. 162 already precompiled. Precompiling packages... 19532.0 ms ✓ ClimaUtilities → ClimaUtilitiesClimaCoreTempestRemapExt 1 dependency successfully precompiled in 20 seconds. 167 already precompiled. Precompiling packages... 4883.3 ms ✓ Interpolations 1 dependency successfully precompiled in 5 seconds. 29 already precompiled. Precompiling packages... 4682.4 ms ✓ SciMLBase → SciMLBaseChainRulesCoreExt 1 dependency successfully precompiled in 5 seconds. 66 already precompiled. Precompiling packages... Info Given DiffEqBaseChainRulesCoreExt was explicitly requested, output will be shown live  WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl 5612.7 ms ✓ DiffEqBase → DiffEqBaseChainRulesCoreExt 1 dependency successfully precompiled in 6 seconds. 99 already precompiled. 1 dependency had output during precompilation: ┌ DiffEqBase → DiffEqBaseChainRulesCoreExt │ [Output was shown above] └ Precompiling packages... 1576.5 ms ✓ KrylovKit → KrylovKitChainRulesCoreExt 1 dependency successfully precompiled in 2 seconds. 11 already precompiled. Precompiling packages... 18721.9 ms ✓ ClimaUtilities → ClimaUtilitiesClimaCoreInterpolationsExt 1 dependency successfully precompiled in 19 seconds. 162 already precompiled. [ Info: Saving TempestRegrid files to /tmp/jl_NCsYfe [ Info: Saving TempestRegrid files to /tmp/jl_CGlukU ┌ Warning: Converting lai_lv data in /tmp/jl_CGlukU/datafile.g from Float32 to Float64 └ @ ClimaUtilitiesClimaCoreTempestRemapExt.TempestRegridderExt ~/.julia/packages/ClimaUtilities/OHLAs/ext/TempestRegridderExt.jl:453 Test Summary: | Pass Total Time Regridders tests | 25 25 9m10.6s [ Info: Saving TempestRegrid files to /tmp/jl_yAhp2z [ Info: Saving TempestRegrid files to /tmp/jl_Li7QRN [ Info: Saving TempestRegrid files to /tmp/jl_0Gq33T ┌ Warning: Converting sp data in /tmp/jl_0Gq33T/datafile.g from Float32 to Float64 └ @ ClimaUtilitiesClimaCoreTempestRemapExt.TempestRegridderExt ~/.julia/packages/ClimaUtilities/OHLAs/ext/TempestRegridderExt.jl:453 [ Info: Saving TempestRegrid files to /tmp/jl_DudUq6 ┌ Warning: Converting sp data in /tmp/jl_DudUq6/datafile.g from Float32 to Float64 └ @ ClimaUtilitiesClimaCoreTempestRemapExt.TempestRegridderExt ~/.julia/packages/ClimaUtilities/OHLAs/ext/TempestRegridderExt.jl:453 [ Info: Saving TempestRegrid files to /tmp/jl_OajqRV [ Info: Saving TempestRegrid files to /tmp/jl_eC59zp ┌ Warning: Converting sp data in /tmp/jl_eC59zp/datafile.g from Float32 to Float64 └ @ ClimaUtilitiesClimaCoreTempestRemapExt.TempestRegridderExt ~/.julia/packages/ClimaUtilities/OHLAs/ext/TempestRegridderExt.jl:453 Test Summary: | Pass Total Time DataHandling tests | 251 251 4m39.7s Test Summary: | Pass Total Time SpaceVaryingInputs tests | 7 7 6.1s Test Summary: | Pass Total Time TimeVaryingInputs tests | 86 86 11.5s ┌ Warning: `t_start` was removed will be ignored │ caller = top-level scope at time_varying_inputs23.jl:26 └ @ Core ~/.julia/packages/ClimaUtilities/OHLAs/test/time_varying_inputs23.jl:26 [ Info: Saving TempestRegrid files to /tmp/jl_HvroNk [ Info: Saving TempestRegrid files to /tmp/jl_2cekO9 [ Info: Saving TempestRegrid files to /tmp/jl_Ib1fN2 [ Info: Saving TempestRegrid files to /tmp/jl_We6cZc [ Info: Saving TempestRegrid files to /tmp/jl_97Q4Lv [ Info: Saving TempestRegrid files to /tmp/jl_0qTyrv [ Info: Saving TempestRegrid files to /tmp/jl_MX3hoM [ Info: Saving TempestRegrid files to /tmp/jl_RSzm6P [ Info: Saving TempestRegrid files to /tmp/jl_LVUusE [ Info: Saving TempestRegrid files to /tmp/jl_NZlFLt ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 721 running 0 of 2 signal (10): User defined signal 1 unknown function (ip: 0x7c0550dd8f14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:523 wait at ./task.jl:1213 wait_forever at ./task.jl:1150 jfptr_wait_forever_69872.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 jl_apply at /source/src/julia.h:2341 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1213 wait_forever at ./task.jl:1150 jfptr_wait_forever_69872.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 jl_apply at /source/src/julia.h:2341 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 2 signal (10): User defined signal 1 unknown function (ip: 0x7da28e119f14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:523 wait at ./task.jl:1213 wait_forever at ./task.jl:1150 jfptr_wait_forever_69872.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 jl_apply at /source/src/julia.h:2341 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 wait at ./task.jl:1213 wait_forever at ./task.jl:1150 jfptr_wait_forever_69872.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 jl_apply at /source/src/julia.h:2341 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (interactive) Task 0x00007da27551b760 Total snapshots: 1. Utilization: 0% ╎1 @Base/task.jl:1150 wait_forever() ╎ 1 @Base/task.jl:1213 wait() Thread 2 (default) Task 0x00007da2779fc100 Total snapshots: 1. Utilization: 0% ╎1 @Base/task.jl:1150 wait_forever() ╎ 1 @Base/task.jl:1213 wait() [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 unknown function (ip: 0x7da28e119f14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:523 [721] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/ClimaUtilities/OHLAs/test/time_varying_inputs23.jl:25 _ZN4llvm17MachineBasicBlock18getFirstTerminatorEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) wait at ./task.jl:1213 wait_forever at ./task.jl:1150 _ZN12_GLOBAL__N_118PHIEliminationImpl12LowerPHINodeERN4llvm17MachineBasicBlockENS1_26MachineInstrBundleIteratorINS1_12MachineInstrELb0EEEb at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) jfptr_wait_forever_69872.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 jl_apply at /source/src/julia.h:2341 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:457 _ZN12_GLOBAL__N_118PHIEliminationImpl3runERN4llvm15MachineFunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) wait at ./task.jl:1213 _ZN12_GLOBAL__N_114PHIElimination20runOnMachineFunctionERN4llvm15MachineFunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) wait_forever at ./task.jl:1150 _ZN4llvm19MachineFunctionPass13runOnFunctionERNS_8FunctionE.part.0 at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13FPPassManager13runOnFunctionERNS_8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm13FPPassManager11runOnModuleERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm6legacy15PassManagerImpl3runERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm3orc14SimpleCompilerclERNS_6ModuleE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) jfptr_wait_forever_69872.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 jl_apply at /source/src/julia.h:2341 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) Allocations: 23458565 (Pool: 23457978; Big: 587); GC: 27 operator() at /source/src/jitlayers.cpp:1577 addModule at /source/src/jitlayers.cpp:2058 jl_compile_codeinst_now at /source/src/jitlayers.cpp:649 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:840 jl_compile_method_internal at /source/src/gf.c:3131 _jl_invoke at /source/src/gf.c:3603 [inlined] ijl_apply_generic at /source/src/gf.c:3811 jl_apply at /source/src/julia.h:2341 [inlined] jl_f_invokelatest at /source/src/builtins.c:877 profile_printing_listener at ./Base.jl:337 #start_profile_listener##0 at ./Base.jl:355 jfptr_YY.start_profile_listenerYY.YY.0_5469.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 jl_apply at /source/src/julia.h:2341 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) jl_lookup_generic_ at /source/src/gf.c:3721 [inlined] ijl_apply_generic at /source/src/gf.c:3807 #20 at /home/pkgeval/.julia/packages/ClimaUtilities/OHLAs/ext/TempestRegridderExt.jl:424 iterate at ./generator.jl:48 [inlined] collect_to! at ./array.jl:848 collect_to_with_first! at ./array.jl:826 unknown function (ip: 0x7c0534c1ad64) at (unknown file) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 _collect at ./array.jl:820 collect_similar at ./array.jl:732 unknown function (ip: 0x7c0534c1a7e6) at (unknown file) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 map at ./abstractarray.jl:3366 unknown function (ip: 0x7c0534c18516) at (unknown file) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 #hdwrite_regridfile_rll_to_cgll#2 at /home/pkgeval/.julia/packages/ClimaUtilities/OHLAs/ext/TempestRegridderExt.jl:424 hdwrite_regridfile_rll_to_cgll at /home/pkgeval/.julia/packages/ClimaUtilities/OHLAs/ext/TempestRegridderExt.jl:345 [inlined] #TempestRegridder#1 at /home/pkgeval/.julia/packages/ClimaUtilities/OHLAs/ext/TempestRegridderExt.jl:83 TempestRegridder at /home/pkgeval/.julia/packages/ClimaUtilities/OHLAs/ext/TempestRegridderExt.jl:67 unknown function (ip: 0x7c0534ccc178) at (unknown file) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 jl_apply at /source/src/julia.h:2341 [inlined] jl_f__apply_iterate at /source/src/builtins.c:864 #DataHandler#1 at /home/pkgeval/.julia/packages/ClimaUtilities/OHLAs/ext/DataHandlingExt.jl:344 DataHandler at /home/pkgeval/.julia/packages/ClimaUtilities/OHLAs/ext/DataHandlingExt.jl:201 unknown function (ip: 0x7c053207747d) at (unknown file) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 jl_apply at /source/src/julia.h:2341 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_body at /source/src/interpreter.c:581 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 _include at ./loading.jl:2906 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_59934.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 jl_apply at /source/src/julia.h:2341 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 eval_body at /source/src/interpreter.c:558 eval_body at /source/src/interpreter.c:558 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_eval_module_expr at /source/src/toplevel.c:197 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:658 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 jfptr_eval_10105.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 jl_apply at /source/src/julia.h:2341 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:243 eval_stmt_value at /source/src/interpreter.c:194 [inlined] eval_body at /source/src/interpreter.c:708 jl_interpret_toplevel_thunk at /source/src/interpreter.c:899 jl_toplevel_eval_flex at /source/src/toplevel.c:773 jl_toplevel_eval_flex at /source/src/toplevel.c:713 ijl_toplevel_eval at /source/src/toplevel.c:785 ijl_toplevel_eval_in at /source/src/toplevel.c:830 eval at ./boot.jl:489 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3611 [inlined] ijl_apply_generic at /source/src/gf.c:3811 _include at ./loading.jl:2906 include at ./Base.jl:310 PkgEval terminated after 2726.22s: test duration exceeded the time limit