Package evaluation of AllenSDK on Julia 1.13.0-DEV.680 (905a44b8ef*) started at 2025-06-01T14:33:20.329 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 6.81s ################################################################################ # Installation # Installing AllenSDK... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [9d22b198] + AllenSDK v0.2.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [9d22b198] + AllenSDK v0.2.0 [992eb4ea] + CondaPkg v0.2.29 [9a962f9c] + DataAPI v1.16.0 [e2d170a0] + DataValueInterfaces v1.0.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [0f8b85d8] + JSON3 v1.14.3 [1914dd2f] + MacroTools v0.5.16 [0b3b1443] + MicroMamba v0.1.14 [bac558e1] + OrderedCollections v1.8.1 [69de0a69] + Parsers v2.8.3 [fa939f87] + Pidfile v1.3.0 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [6099a3de] + PythonCall v0.9.25 [ae029012] + Requires v1.3.1 [6c6a2e73] + Scratch v1.2.1 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [e17b2a0c] + UnsafePointers v1.0.0 [f8abcde7] + micromamba_jll v1.5.8+0 [4d7b5844] + pixi_jll v0.41.3+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [deac9b47] + LibCURL_jll v8.12.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [458c3c95] + OpenSSL_jll v3.5.0+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Installation completed after 1.03s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... ERROR: LoadError: The following 1 direct dependency failed to precompile: AllenSDK Failed to precompile AllenSDK [9d22b198-c11d-497b-9ac7-6add78eade21] to "/home/pkgeval/.julia/compiled/v1.13/AllenSDK/jl_TQ67si" (ProcessExited(1)). CondaPkg Found dependencies: /home/pkgeval/.julia/packages/AllenSDK/5o86m/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/L4cjh/CondaPkg.toml CondaPkg Resolving changes + allensdk (pip) + argschema (pip) + hdmf + ndx-events (pip) + openssl + python + uv + wheel CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ init │ --format pixi └ /tmp/jl_8g5C0p/.CondaPkg ✔ Created /tmp/jl_8g5C0p/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_8g5C0p/.CondaPkg/pixi.toml │ [dependencies] │ uv = ">=0.4" │ wheel = "*" │ hdmf = ">3.6" │ openssl = ">=3, <3.6" │ │ [dependencies.python] │ build = "*cpython*" │ channel = "conda-forge" │ version = ">=3.9,<=3.11, >=3.8,<4" │ │ [project] │ description = "automatically generated by CondaPkg.jl" │ name = ".CondaPkg" │ channel-priority = "strict" │ platforms = ["linux-64"] │ channels = ["conda-forge"] │ │ [pypi-dependencies.ndx-events] │ url = "https://github.com/rly/ndx-events/archive/refs/tags/0.2.0.zip" │ │ [pypi-dependencies.argschema] │ url = "https://github.com/AllenInstitute/argschema/archive/refs/tags/v3.0.1.zip" │ │ [pypi-dependencies.allensdk] └ url = "https://github.com/AllenInstitute/AllenSDK/archive/refs/tags/v2.16.2.zip" CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ install └ --manifest-path /tmp/jl_8g5C0p/.CondaPkg/pixi.toml Error: × failed to solve the pypi requirements of 'default' 'linux-64' ├─▶ failed to resolve pypi dependencies ╰─▶ Because allensdk==2.16.2 depends on scipy<1.11 and scipy==1.15.2, we can conclude that allensdk==2.16.2 cannot be used. And because only allensdk==2.16.2 is available and you require allensdk, we can conclude that your requirements are unsatisfiable. ERROR: LoadError: InitError: failed process: Process(setenv(`/home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi install --manifest-path /tmp/jl_8g5C0p/.CondaPkg/pixi.toml`,["PYTHON=", "LANG=C.UTF-8", "PATH=/home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin", "JULIA_LOAD_PATH=/tmp/jl_8g5C0p/Project.toml:/home/pkgeval/.julia/environments/v1.13/Project.toml:/opt/julia/share/julia/stdlib/v1.13", "JULIA_NUM_PRECOMPILE_TASKS=1", "JULIA_PKG_PRECOMPILE_AUTO=0", "OPENBLAS_MAIN_FREE=1", "DISPLAY=:1", "HOME=/home/pkgeval", "R_HOME=*", "JULIA_CPU_THREADS=1", "JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia:", "JULIA_NUM_THREADS=1", "PIXI_CACHE_DIR=/home/pkgeval/.julia/scratchspaces/992eb4ea-22a4-4c89-a5bb-47a3300528ab/pixi_cache", "OPENBLAS_NUM_THREADS=1", "CI=true", "JULIA_PKGEVAL=true", "LD_LIBRARY_PATH=/opt/julia/bin/../lib/julia:/opt/julia/bin/../lib", "RATTLER_CACHE_DIR=/home/pkgeval/.julia/scratchspaces/992eb4ea-22a4-4c89-a5bb-47a3300528ab/pixi_cache", "PKGEVAL=true"]), ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:602 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:517 [3] run(::Cmd) @ Base ./process.jl:514 [4] _run(io::IO, cmd::Cmd, args::Any; flags::Any) @ CondaPkg ~/.julia/packages/CondaPkg/hJuAq/src/resolve.jl:715 [5] _run(io::IO, cmd::Cmd, args::Any) @ CondaPkg ~/.julia/packages/CondaPkg/hJuAq/src/resolve.jl:709 [6] (::CondaPkg.var"#63#64"{Bool, Base.PipeEndpoint, String, Vector{CondaPkg.PipPkgSpec}, Vector{CondaPkg.PkgSpec}, Vector{CondaPkg.ChannelSpec}})() @ CondaPkg ~/.julia/packages/CondaPkg/hJuAq/src/resolve.jl:1000 [7] cd(f::CondaPkg.var"#63#64"{Bool, Base.PipeEndpoint, String, Vector{CondaPkg.PipPkgSpec}, Vector{CondaPkg.PkgSpec}, Vector{CondaPkg.ChannelSpec}}, dir::String) @ Base.Filesystem ./file.jl:112 [8] resolve(; force::Bool, io::IO, interactive::Bool, dry_run::Bool) @ CondaPkg ~/.julia/packages/CondaPkg/hJuAq/src/resolve.jl:940 [9] resolve() @ CondaPkg ~/.julia/packages/CondaPkg/hJuAq/src/resolve.jl:718 [10] envdir() @ CondaPkg ~/.julia/packages/CondaPkg/hJuAq/src/env.jl:70 [11] init_context() @ PythonCall.C ~/.julia/packages/PythonCall/L4cjh/src/C/context.jl:63 [12] __init__() @ PythonCall.C ~/.julia/packages/PythonCall/L4cjh/src/C/C.jl:23 [13] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1416 [14] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1404 [15] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1292 [16] _include_from_serialized @ ./loading.jl:1246 [inlined] [17] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2088 [18] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2600 [19] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [20] macro expansion @ ./loading.jl:2394 [inlined] [21] macro expansion @ ./lock.jl:376 [inlined] [22] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [23] require @ ./loading.jl:2335 [inlined] [24] eval_import_path @ ./module.jl:36 [inlined] [25] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [26] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [27] top-level scope @ ~/.julia/packages/AllenSDK/5o86m/src/AllenSDK.jl:2 [28] include(mod::Module, _path::String) @ Base ./Base.jl:309 [29] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3000 [30] top-level scope @ stdin:5 [31] eval(m::Module, e::Any) @ Core ./boot.jl:489 [32] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [33] include_string @ ./loading.jl:2856 [inlined] [34] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [35] _start() @ Base ./client.jl:557 during initialization of module C in expression starting at /home/pkgeval/.julia/packages/AllenSDK/5o86m/src/AllenSDK.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 74.39s ################################################################################ # Testing # Testing AllenSDK Status `/tmp/jl_BoXwr1/Project.toml` [9d22b198] AllenSDK v0.2.0 [6099a3de] PythonCall v0.9.25 [6c6a2e73] Scratch v1.2.1 [8dfed614] Test v1.11.0 Status `/tmp/jl_BoXwr1/Manifest.toml` [9d22b198] AllenSDK v0.2.0 [992eb4ea] CondaPkg v0.2.29 [9a962f9c] DataAPI v1.16.0 [e2d170a0] DataValueInterfaces v1.0.0 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [0f8b85d8] JSON3 v1.14.3 [1914dd2f] MacroTools v0.5.16 [0b3b1443] MicroMamba v0.1.14 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [fa939f87] Pidfile v1.3.0 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [6099a3de] PythonCall v0.9.25 [ae029012] Requires v1.3.1 [6c6a2e73] Scratch v1.2.1 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [e17b2a0c] UnsafePointers v1.0.0 [f8abcde7] micromamba_jll v1.5.8+0 [4d7b5844] pixi_jll v0.41.3+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [deac9b47] LibCURL_jll v8.12.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [458c3c95] OpenSSL_jll v3.5.0+0 [83775a58] Zlib_jll v1.3.1+2 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Testing Running tests... Precompiling packages... Info Given AllenSDK was explicitly requested, output will be shown live   CondaPkg Found dependencies: /home/pkgeval/.julia/packages/AllenSDK/5o86m/CondaPkg.toml  CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/L4cjh/CondaPkg.toml  CondaPkg Resolving changes  + allensdk (pip)  + argschema (pip)  + hdmf  + ndx-events (pip)  + openssl  + python  + uv  + wheel  CondaPkg Initialising pixi  │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi  │ init  │ --format pixi  └ /tmp/jl_BoXwr1/.CondaPkg ✔ Created /tmp/jl_BoXwr1/.CondaPkg/pixi.toml  CondaPkg Wrote /tmp/jl_BoXwr1/.CondaPkg/pixi.toml  │ [dependencies]  │ uv = ">=0.4"  │ wheel = "*"  │ hdmf = ">3.6"  │ openssl = ">=3, <3.6"  │  │ [dependencies.python]  │ build = "*cpython*"  │ channel = "conda-forge"  │ version = ">=3.9,<=3.11, >=3.8,<4"  │  │ [project]  │ description = "automatically generated by CondaPkg.jl"  │ name = ".CondaPkg"  │ channel-priority = "strict"  │ platforms = ["linux-64"]  │ channels = ["conda-forge"]  │  │ [pypi-dependencies.ndx-events]  │ url = "https://github.com/rly/ndx-events/archive/refs/tags/0.2.0.zip"  │  │ [pypi-dependencies.argschema]  │ url = "https://github.com/AllenInstitute/argschema/archive/refs/tags/v3.0.1.zip"  │  │ [pypi-dependencies.allensdk]  └ url = "https://github.com/AllenInstitute/AllenSDK/archive/refs/tags/v2.16.2.zip"  CondaPkg Installing packages  │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi  │ install  └ --manifest-path /tmp/jl_BoXwr1/.CondaPkg/pixi.toml Error:  × failed to solve the pypi requirements of 'default' 'linux-64'  ├─▶ failed to resolve pypi dependencies  ╰─▶ Because allensdk==2.16.2 depends on scipy<1.11 and scipy==1.15.2, we can  conclude that allensdk==2.16.2 cannot be used.  And because only allensdk==2.16.2 is available and you require allensdk,  we can conclude that your requirements are unsatisfiable.  ERROR: LoadError: InitError: failed process: Process(setenv(`/home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi install --manifest-path /tmp/jl_BoXwr1/.CondaPkg/pixi.toml`,["PYTHON=", "LANG=C.UTF-8", "PATH=/home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin", "JULIA_LOAD_PATH=/tmp/jl_BoXwr1/Project.toml", "JULIA_NUM_PRECOMPILE_TASKS=1", "JULIA_PKG_PRECOMPILE_AUTO=0", "OPENBLAS_MAIN_FREE=1", "DISPLAY=:1", "HOME=/home/pkgeval", "R_HOME=*", "JULIA_CPU_THREADS=1", "JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia:", "JULIA_NUM_THREADS=1", "PIXI_CACHE_DIR=/home/pkgeval/.julia/scratchspaces/992eb4ea-22a4-4c89-a5bb-47a3300528ab/pixi_cache", "OPENBLAS_NUM_THREADS=1", "CI=true", "JULIA_PKGEVAL=true", "LD_LIBRARY_PATH=/opt/julia/bin/../lib/julia:/opt/julia/bin/../lib", "RATTLER_CACHE_DIR=/home/pkgeval/.julia/scratchspaces/992eb4ea-22a4-4c89-a5bb-47a3300528ab/pixi_cache", "PKGEVAL=true"]), ProcessExited(1)) [1]  Stacktrace:  [1] pipeline_error  @ ./process.jl:602 [inlined]  [2] run(::Cmd; wait::Bool)  @ Base ./process.jl:517  [3] run(::Cmd)  @ Base ./process.jl:514  [4] _run(io::IO, cmd::Cmd, args::Any; flags::Any)  @ CondaPkg ~/.julia/packages/CondaPkg/hJuAq/src/resolve.jl:715  [5] _run(io::IO, cmd::Cmd, args::Any)  @ CondaPkg ~/.julia/packages/CondaPkg/hJuAq/src/resolve.jl:709  [6] (::CondaPkg.var"#63#64"{Bool, Base.PipeEndpoint, String, Vector{CondaPkg.PipPkgSpec}, Vector{CondaPkg.PkgSpec}, Vector{CondaPkg.ChannelSpec}})()  @ CondaPkg ~/.julia/packages/CondaPkg/hJuAq/src/resolve.jl:1000  [7] cd(f::CondaPkg.var"#63#64"{Bool, Base.PipeEndpoint, String, Vector{CondaPkg.PipPkgSpec}, Vector{CondaPkg.PkgSpec}, Vector{CondaPkg.ChannelSpec}}, dir::String)  @ Base.Filesystem ./file.jl:112  [8] resolve(; force::Bool, io::IO, interactive::Bool, dry_run::Bool)  @ CondaPkg ~/.julia/packages/CondaPkg/hJuAq/src/resolve.jl:940  [9] resolve()  @ CondaPkg ~/.julia/packages/CondaPkg/hJuAq/src/resolve.jl:718  [10] envdir()  @ CondaPkg ~/.julia/packages/CondaPkg/hJuAq/src/env.jl:70  [11] init_context()  @ PythonCall.C ~/.julia/packages/PythonCall/L4cjh/src/C/context.jl:63  [12] __init__()  @ PythonCall.C ~/.julia/packages/PythonCall/L4cjh/src/C/C.jl:23  [13] run_module_init(mod::Module, i::Int64)  @ Base ./loading.jl:1416  [14] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)  @ Base ./loading.jl:1404  [15] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool)  @ Base ./loading.jl:1292  [16] _include_from_serialized  @ ./loading.jl:1246 [inlined]  [17] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})  @ Base ./loading.jl:2088  [18] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2600  [19] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2466  [20] macro expansion  @ ./loading.jl:2394 [inlined]  [21] macro expansion  @ ./lock.jl:376 [inlined]  [22] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2359  [23] require  @ ./loading.jl:2335 [inlined]  [24] eval_import_path  @ ./module.jl:36 [inlined]  [25] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [26] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [27] top-level scope  @ ~/.julia/packages/AllenSDK/5o86m/src/AllenSDK.jl:2  [28] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [29] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3000  [30] top-level scope  @ stdin:5  [31] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [32] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2846  [33] include_string  @ ./loading.jl:2856 [inlined]  [34] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:322  [35] _start()  @ Base ./client.jl:557 during initialization of module C in expression starting at /home/pkgeval/.julia/packages/AllenSDK/5o86m/src/AllenSDK.jl:1 in expression starting at stdin:5 ✗ AllenSDK 0 dependencies successfully precompiled in 30 seconds. 52 already precompiled. ERROR: LoadError: The following 1 direct dependency failed to precompile: AllenSDK Failed to precompile AllenSDK [9d22b198-c11d-497b-9ac7-6add78eade21] to "/home/pkgeval/.julia/compiled/v1.13/AllenSDK/jl_gaDB85" (ProcessExited(1)). CondaPkg Found dependencies: /home/pkgeval/.julia/packages/AllenSDK/5o86m/CondaPkg.toml CondaPkg Found dependencies: /home/pkgeval/.julia/packages/PythonCall/L4cjh/CondaPkg.toml CondaPkg Resolving changes + allensdk (pip) + argschema (pip) + hdmf + ndx-events (pip) + openssl + python + uv + wheel CondaPkg Initialising pixi │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ init │ --format pixi └ /tmp/jl_BoXwr1/.CondaPkg ✔ Created /tmp/jl_BoXwr1/.CondaPkg/pixi.toml CondaPkg Wrote /tmp/jl_BoXwr1/.CondaPkg/pixi.toml │ [dependencies] │ uv = ">=0.4" │ wheel = "*" │ hdmf = ">3.6" │ openssl = ">=3, <3.6" │ │ [dependencies.python] │ build = "*cpython*" │ channel = "conda-forge" │ version = ">=3.9,<=3.11, >=3.8,<4" │ │ [project] │ description = "automatically generated by CondaPkg.jl" │ name = ".CondaPkg" │ channel-priority = "strict" │ platforms = ["linux-64"] │ channels = ["conda-forge"] │ │ [pypi-dependencies.ndx-events] │ url = "https://github.com/rly/ndx-events/archive/refs/tags/0.2.0.zip" │ │ [pypi-dependencies.argschema] │ url = "https://github.com/AllenInstitute/argschema/archive/refs/tags/v3.0.1.zip" │ │ [pypi-dependencies.allensdk] └ url = "https://github.com/AllenInstitute/AllenSDK/archive/refs/tags/v2.16.2.zip" CondaPkg Installing packages │ /home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi │ install └ --manifest-path /tmp/jl_BoXwr1/.CondaPkg/pixi.toml Error: × failed to solve the pypi requirements of 'default' 'linux-64' ├─▶ failed to resolve pypi dependencies ╰─▶ Because allensdk==2.16.2 depends on scipy<1.11 and scipy==1.15.2, we can conclude that allensdk==2.16.2 cannot be used. And because only allensdk==2.16.2 is available and you require allensdk, we can conclude that your requirements are unsatisfiable. ERROR: LoadError: InitError: failed process: Process(setenv(`/home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin/pixi install --manifest-path /tmp/jl_BoXwr1/.CondaPkg/pixi.toml`,["PYTHON=", "LANG=C.UTF-8", "PATH=/home/pkgeval/.julia/artifacts/cefba4912c2b400756d043a2563ef77a0088866b/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin", "JULIA_LOAD_PATH=/tmp/jl_BoXwr1/Project.toml", "JULIA_NUM_PRECOMPILE_TASKS=1", "JULIA_PKG_PRECOMPILE_AUTO=0", "OPENBLAS_MAIN_FREE=1", "DISPLAY=:1", "HOME=/home/pkgeval", "R_HOME=*", "JULIA_CPU_THREADS=1", "JULIA_DEPOT_PATH=/home/pkgeval/.julia:/usr/local/share/julia:", "JULIA_NUM_THREADS=1", "PIXI_CACHE_DIR=/home/pkgeval/.julia/scratchspaces/992eb4ea-22a4-4c89-a5bb-47a3300528ab/pixi_cache", "OPENBLAS_NUM_THREADS=1", "CI=true", "JULIA_PKGEVAL=true", "LD_LIBRARY_PATH=/opt/julia/bin/../lib/julia:/opt/julia/bin/../lib", "RATTLER_CACHE_DIR=/home/pkgeval/.julia/scratchspaces/992eb4ea-22a4-4c89-a5bb-47a3300528ab/pixi_cache", "PKGEVAL=true"]), ProcessExited(1)) [1] Stacktrace: [1] pipeline_error @ ./process.jl:602 [inlined] [2] run(::Cmd; wait::Bool) @ Base ./process.jl:517 [3] run(::Cmd) @ Base ./process.jl:514 [4] _run(io::IO, cmd::Cmd, args::Any; flags::Any) @ CondaPkg ~/.julia/packages/CondaPkg/hJuAq/src/resolve.jl:715 [5] _run(io::IO, cmd::Cmd, args::Any) @ CondaPkg ~/.julia/packages/CondaPkg/hJuAq/src/resolve.jl:709 [6] (::CondaPkg.var"#63#64"{Bool, Base.PipeEndpoint, String, Vector{CondaPkg.PipPkgSpec}, Vector{CondaPkg.PkgSpec}, Vector{CondaPkg.ChannelSpec}})() @ CondaPkg ~/.julia/packages/CondaPkg/hJuAq/src/resolve.jl:1000 [7] cd(f::CondaPkg.var"#63#64"{Bool, Base.PipeEndpoint, String, Vector{CondaPkg.PipPkgSpec}, Vector{CondaPkg.PkgSpec}, Vector{CondaPkg.ChannelSpec}}, dir::String) @ Base.Filesystem ./file.jl:112 [8] resolve(; force::Bool, io::IO, interactive::Bool, dry_run::Bool) @ CondaPkg ~/.julia/packages/CondaPkg/hJuAq/src/resolve.jl:940 [9] resolve() @ CondaPkg ~/.julia/packages/CondaPkg/hJuAq/src/resolve.jl:718 [10] envdir() @ CondaPkg ~/.julia/packages/CondaPkg/hJuAq/src/env.jl:70 [11] init_context() @ PythonCall.C ~/.julia/packages/PythonCall/L4cjh/src/C/context.jl:63 [12] __init__() @ PythonCall.C ~/.julia/packages/PythonCall/L4cjh/src/C/C.jl:23 [13] run_module_init(mod::Module, i::Int64) @ Base ./loading.jl:1416 [14] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String) @ Base ./loading.jl:1404 [15] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::Nothing, depmods::Vector{Any}; register::Bool) @ Base ./loading.jl:1292 [16] _include_from_serialized @ ./loading.jl:1246 [inlined] [17] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String}) @ Base ./loading.jl:2088 [18] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2600 [19] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [20] macro expansion @ ./loading.jl:2394 [inlined] [21] macro expansion @ ./lock.jl:376 [inlined] [22] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [23] require @ ./loading.jl:2335 [inlined] [24] eval_import_path @ ./module.jl:36 [inlined] [25] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [26] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [27] top-level scope @ ~/.julia/packages/AllenSDK/5o86m/src/AllenSDK.jl:2 [28] include(mod::Module, _path::String) @ Base ./Base.jl:309 [29] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3000 [30] top-level scope @ stdin:5 [31] eval(m::Module, e::Any) @ Core ./boot.jl:489 [32] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [33] include_string @ ./loading.jl:2856 [inlined] [34] exec_options(opts::Base.JLOptions) @ Base ./client.jl:322 [35] _start() @ Base ./client.jl:557 during initialization of module C in expression starting at /home/pkgeval/.julia/packages/AllenSDK/5o86m/src/AllenSDK.jl:1 in expression starting at stdin: in expression starting at /home/pkgeval/.julia/packages/AllenSDK/5o86m/test/runtests.jl:1 Testing failed after 37.62s ERROR: LoadError: Package AllenSDK errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2421 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2276 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:498 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:309 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:324 [12] _start() @ Base ./client.jl:557 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 153.5s: package fails to precompile