Package evaluation of Stheno on Julia 1.13.0-DEV.655 (3a5e1f15ec*) started at 2025-05-29T17:38:13.268 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 7.59s ################################################################################ # Installation # Installing Stheno... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [8188c328] + Stheno v0.8.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [99985d1d] + AbstractGPs v0.5.24 [66dad0bd] + AliasTables v1.1.3 [4c555306] + ArrayLayouts v1.11.1 ⌅ [8e7c35d0] + BlockArrays v0.16.43 [d360d2e6] + ChainRulesCore v1.25.1 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [187b0558] + ConstructionBase v1.5.8 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.4 [1a297f60] + FillArrays v1.13.0 [d9f16b24] + Functors v0.5.2 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [ec8451be] + KernelFunctions v0.10.65 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [79098fc4] + Rmath v0.8.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [8188c328] + Stheno v0.8.2 [62fd8b95] + TensorCore v0.1.1 [700de1a5] + ZygoteRules v0.2.7 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.12.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 3.84s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 48.1s ################################################################################ # Testing # Testing Stheno Status `/tmp/jl_wOIzCJ/Project.toml` ⌅ [e30172f5] Documenter v0.27.25 [26cc04aa] FiniteDifferences v0.12.32 [10745b16] Statistics v1.11.1 [8188c328] Stheno v0.8.2 [a759f4b9] TimerOutputs v0.5.29 ⌅ [e88e6eb3] Zygote v0.6.77 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_wOIzCJ/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [99985d1d] AbstractGPs v0.5.24 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [4c555306] ArrayLayouts v1.11.1 [a9b6321e] Atomix v1.1.1 ⌅ [8e7c35d0] BlockArrays v0.16.43 [fa961155] CEnum v0.5.0 [082447d4] ChainRules v1.72.3 [d360d2e6] ChainRulesCore v1.25.1 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [187b0558] ConstructionBase v1.5.8 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.4 ⌅ [e30172f5] Documenter v0.27.25 [e2ba6199] ExprTools v0.1.10 [1a297f60] FillArrays v1.13.0 [26cc04aa] FiniteDifferences v0.12.32 [f6369f11] ForwardDiff v1.0.1 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.2 [46192b85] GPUArraysCore v0.2.0 [076d061b] HashArrayMappedTries v0.2.0 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.14 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [63c18a36] KernelAbstractions v0.9.34 [ec8451be] KernelFunctions v0.10.65 [929cbde3] LLVM v9.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [e1d29d7a] Missings v1.2.0 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 [c1ae055f] RealDot v0.1.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [708f8203] Richardson v1.4.2 [79098fc4] Rmath v0.8.0 [7e506255] ScopedValues v1.3.0 [a2af1166] SortingAlgorithms v1.2.1 [dc90abb0] SparseInverseSubset v0.1.2 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.1 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [8188c328] Stheno v0.8.2 [09ab397b] StructArrays v0.7.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [62fd8b95] TensorCore v0.1.1 [a759f4b9] TimerOutputs v0.5.29 [013be700] UnsafeAtomics v0.3.0 ⌅ [e88e6eb3] Zygote v0.6.77 [700de1a5] ZygoteRules v0.2.7 [dad2f222] LLVMExtra_jll v0.0.36+0 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.12.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 8991.2 ms ✓ Documenter 1 dependency successfully precompiled in 9 seconds. 28 already precompiled. Precompiling packages... 3080.9 ms ✓ FiniteDifferences 1 dependency successfully precompiled in 3 seconds. 18 already precompiled. Precompiling packages... 12787.8 ms ✓ ChainRules 8579.9 ms ✓ KernelAbstractions 9380.5 ms ✓ ForwardDiff 3477.9 ms ✓ KernelAbstractions → SparseArraysExt 2865.9 ms ✓ KernelAbstractions → LinearAlgebraExt 2755.8 ms ✓ StructArrays → StructArraysGPUArraysCoreExt 3944.3 ms ✓ ForwardDiff → ForwardDiffStaticArraysExt 16332.6 ms ✓ GPUArrays 65021.0 ms ✓ Zygote 9 dependencies successfully precompiled in 126 seconds. 95 already precompiled. Precompiling packages... 10058.4 ms ✓ Zygote → ZygoteDistancesExt 1 dependency successfully precompiled in 11 seconds. 108 already precompiled. WARNING: Method definition zero(KernelFunctions.ColVecs{T, TX, S} where S where TX<:AbstractArray{T, 2} where T) in module KernelFunctions at /home/pkgeval/.julia/packages/KernelFunctions/A0P7n/src/utils.jl:96 overwritten in module Main at /home/pkgeval/.julia/packages/Stheno/ZSwgx/test/test_util.jl:54. gp: affine_transformations: doctests WARNING: Detected access to binding `Stheno.##docmeta#278` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ┌ Warning: Unable to determine HTML(edit_link = ...) from remote HEAD branch, defaulting to "master". │ Calling `git remote` failed with an exception. Set JULIA_DEBUG=Documenter to see the error. │ Unless this is due to a configuration error, the relevant variable should be set explicitly. └ @ Documenter.Utilities ~/.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl:822 [ Info: SetupBuildDirectory: setting up build directory. [ Info: Doctest: running doctests. [ Info: Skipped ExpandTemplates step (doctest only). [ Info: Skipped CrossReferences step (doctest only). [ Info: Skipped CheckDocument step (doctest only). [ Info: Skipped Populate step (doctest only). [ Info: Skipped RenderDocument step (doctest only). Test Summary: | Pass Total Time Stheno | 1179 1179 19m49.5s ───────────────────────────────────────────────────────────────────────────────────────────────────── Time Allocations ─────────────────────── ──────────────────────── Tot / % measured: 1208s / 98.5% 30.0GiB / 99.3% Section ncalls time %tot avg alloc %tot avg ───────────────────────────────────────────────────────────────────────────────────────────────────── affine_transformations 1 763s 64.2% 763s 21.0GiB 70.4% 21.0GiB addition 1 430s 36.2% 430s 12.2GiB 41.0% 12.2GiB Standardised Tests (correlated sum) 1 242s 20.4% 242s 6.66GiB 22.3% 6.66GiB adj_ad 9 33.2s 2.8% 3.69s 1.05GiB 3.5% 119MiB adj_fd 9 9.08s 0.8% 1.01s 329MiB 1.1% 36.5MiB Standardised Tests (independent sum) 1 139s 11.7% 139s 5.22GiB 17.5% 5.22GiB adj_ad 9 27.0s 2.3% 3.00s 1.26GiB 4.2% 143MiB adj_fd 9 10.3s 0.9% 1.14s 314MiB 1.0% 34.9MiB Correlated GPs 1 45.9s 3.9% 45.9s 294MiB 1.0% 294MiB Consistency Tests 1 19.4s 1.6% 19.4s 129MiB 0.4% 129MiB Verify mean / kernel numerically 1 3.00s 0.3% 3.00s 43.1MiB 0.1% 43.1MiB Consistency Tests 1 1.79s 0.2% 1.79s 14.7MiB 0.0% 14.7MiB product 1 155s 13.1% 155s 4.07GiB 13.6% 4.07GiB multiply by function 1 91.5s 7.7% 91.5s 2.17GiB 7.3% 2.17GiB Diff Tests 1 51.3s 4.3% 51.3s 1.63GiB 5.5% 1.63GiB adj_ad 9 20.0s 1.7% 2.23s 890MiB 2.9% 98.9MiB adj_fd 9 5.91s 0.5% 657ms 115MiB 0.4% 12.8MiB Consistency Tests 1 6.32s 0.5% 6.32s 109MiB 0.4% 109MiB multiply by constant 1 63.8s 5.4% 63.8s 1.90GiB 6.4% 1.90GiB Diff Tests 1 48.2s 4.1% 48.2s 1.84GiB 6.2% 1.84GiB adj_ad 9 15.5s 1.3% 1.72s 812MiB 2.7% 90.3MiB adj_fd 9 10.2s 0.9% 1.13s 307MiB 1.0% 34.1MiB Consistency Tests 1 4.02s 0.3% 4.02s 20.3MiB 0.1% 20.3MiB GP mul errors 1 14.3ms 0.0% 14.3ms 40.1KiB 0.0% 40.1KiB compose 1 85.4s 7.2% 85.4s 2.41GiB 8.1% 2.41GiB general 1 51.6s 4.3% 51.6s 1.54GiB 5.2% 1.54GiB Diff Tests 1 45.6s 3.8% 45.6s 1.48GiB 5.0% 1.48GiB adj_ad 9 14.9s 1.3% 1.66s 718MiB 2.4% 79.7MiB adj_fd 9 5.46s 0.5% 606ms 113MiB 0.4% 12.6MiB Consistency Tests 1 4.64s 0.4% 4.64s 39.7MiB 0.1% 39.7MiB Stretch 1 27.7s 2.3% 27.7s 781MiB 2.6% 781MiB scalar stretch 1 27.0s 2.3% 27.0s 768MiB 2.5% 768MiB scalar input 1 26.1s 2.2% 26.1s 764MiB 2.5% 764MiB adj_fd 9 8.83s 0.7% 981ms 295MiB 1.0% 32.8MiB adj_ad 9 4.09s 0.3% 454ms 143MiB 0.5% 15.9MiB vector input 1 806ms 0.1% 806ms 3.36MiB 0.0% 3.36MiB Vector stretch 1 632ms 0.1% 632ms 9.93MiB 0.0% 9.93MiB Matrix stretch 1 136ms 0.0% 136ms 3.07MiB 0.0% 3.07MiB Shift 1 3.27s 0.3% 3.27s 41.5MiB 0.1% 41.5MiB Shift{Vector{Float64}} 1 1.83s 0.2% 1.83s 15.0MiB 0.0% 15.0MiB Shift{Float64} 1 1.43s 0.1% 1.43s 26.5MiB 0.1% 26.5MiB Select 1 1.58s 0.1% 1.58s 33.7MiB 0.1% 33.7MiB evaluation 1 698ms 0.1% 698ms 21.6MiB 0.1% 21.6MiB idx isa Vector 1 521ms 0.0% 521ms 7.93MiB 0.0% 7.93MiB idx isa Integer 1 359ms 0.0% 359ms 4.07MiB 0.0% 4.07MiB Periodic 1 1.21s 0.1% 1.21s 34.5MiB 0.1% 34.5MiB cross 1 31.2s 2.6% 31.2s 1.41GiB 4.7% 1.41GiB block arrays 1 16.8s 1.4% 16.8s 813MiB 2.7% 813MiB Stheno._collect ∘ _mortar 1 14.1s 1.2% 14.1s 685MiB 2.2% 685MiB BlockMatrix 1 7.50s 0.6% 7.50s 381MiB 1.2% 381MiB adj_fd 1 960ms 0.1% 960ms 112MiB 0.4% 112MiB adj_ad 1 53.4ms 0.0% 53.4ms 2.40MiB 0.0% 2.40MiB BlockVector 1 6.56s 0.6% 6.56s 304MiB 1.0% 304MiB adj_fd 1 818ms 0.1% 818ms 13.2MiB 0.0% 13.2MiB adj_ad 1 223ms 0.0% 223ms 15.8MiB 0.1% 15.8MiB fdm stuff 1 2.75s 0.2% 2.75s 128MiB 0.4% 128MiB Correctness tests 1 8.08s 0.7% 8.08s 393MiB 1.3% 393MiB Standardised Tests 1 6.30s 0.5% 6.30s 242MiB 0.8% 242MiB gp 1 198s 16.6% 198s 4.50GiB 15.1% 4.50GiB sparse gp 1 21.4s 1.8% 21.4s 380MiB 1.2% 380MiB SparseFiniteGP inference 1 16.1s 1.4% 16.1s 267MiB 0.9% 267MiB SparseFiniteGP methods 1 4.89s 0.4% 4.89s 109MiB 0.4% 109MiB SparseFiniteGP Constructors 1 375ms 0.0% 375ms 4.11MiB 0.0% 4.11MiB adj_ad 2 19.9s 1.7% 9.93s 844MiB 2.8% 422MiB gp 1 16.1s 1.4% 16.1s 269MiB 0.9% 269MiB GP 1 15.7s 1.3% 15.7s 266MiB 0.9% 266MiB independent GPs 1 404ms 0.0% 404ms 2.72MiB 0.0% 2.72MiB wrapped AbstractGP 1 11.0ms 0.0% 11.0ms 289KiB 0.0% 289KiB adj_fd 2 2.68s 0.2% 1.34s 43.4MiB 0.1% 21.7MiB derived_gp 1 178μs 0.0% 178μs 1.56KiB 0.0% 1.56KiB gaussian_process_probabilistic_programme 1 146s 12.3% 146s 2.33GiB 7.8% 2.33GiB Zygote 1 27.6s 2.3% 27.6s 0.99GiB 3.3% 0.99GiB nested gppp 1 16.8s 1.4% 16.8s 93.8MiB 0.3% 93.8MiB External Consistency 1 14.0s 1.2% 14.0s 100MiB 0.3% 100MiB split 1 647ms 0.1% 647ms 12.1MiB 0.0% 12.1MiB gppp macro 1 54.3ms 0.0% 54.3ms 575KiB 0.0% 575KiB doctests 1 74.9s 6.3% 74.9s 1.72GiB 5.8% 1.72GiB BlockData 1 7.07s 0.6% 7.07s 265MiB 0.9% 265MiB vcat(::GPPPInput...) 1 2.39s 0.2% 2.39s 102MiB 0.3% 102MiB ───────────────────────────────────────────────────────────────────────────────────────────────────── Testing Stheno tests passed Testing completed after 1376.05s PkgEval succeeded after 1455.73s