Package evaluation of GIRFReco on Julia 1.13.0-DEV.655 (3a5e1f15ec*) started at 2025-05-30T07:58:53.477 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 7.93s ################################################################################ # Installation # Installing GIRFReco... Resolving package versions... Installed HDF5 ─ v0.16.16 Updating `~/.julia/environments/v1.13/Project.toml` [cf1bd817] + GIRFReco v0.1.7 Updating `~/.julia/environments/v1.13/Manifest.toml` [14f7f29c] + AMD v0.5.3 [a4c015fc] + ANSIColoredPrinters v0.0.1 [621f4979] + AbstractFFTs v1.5.0 [7f219486] + AbstractNFFTs v0.8.2 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.19.0 [a9b6321e] + Atomix v1.1.1 ⌃ [13072b0f] + AxisAlgorithms v1.0.1 [39de3d68] + AxisArrays v0.4.7 [198e06fe] + BangBang v0.4.4 [9718e550] + Baselet v0.1.1 [26cce99e] + BasicInterpolators v0.7.1 [d1d4a3ce] + BitFlags v0.1.9 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] + BufferedStreams v1.2.2 [fa961155] + CEnum v0.5.0 [2a0fbf3d] + CPUSummary v0.2.6 [00ebfdb7] + CSTParser v3.4.3 [aafaddc9] + CatIndices v0.2.2 [082447d4] + ChainRules v1.72.3 [d360d2e6] + ChainRulesCore v1.25.1 [aaaa29a8] + Clustering 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v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.12.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.0+0 [efcefdf7] + PCRE2_jll v10.44.0+1 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Building HDF5 → `~/.julia/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/114e20044677badbc631ee6fdc80a67920561a29/build.log` Installation completed after 19.33s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... ERROR: LoadError: The following 3 direct dependencies failed to precompile: ImageUtils Failed to precompile ImageUtils [8ad4436d-4835-5a14-8bce-3ae014d2950b] to "/home/pkgeval/.julia/compiled/v1.13/ImageUtils/jl_fT4o2E" (ProcessExited(1)). WARNING: Constructor for type "Alg" was extended in `ImageFiltering` without explicit qualification or import. NOTE: Assumed "Alg" refers to `Algorithm.Alg`. This behavior is deprecated and may differ in future versions. NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function Alg end`. Hint: To silence the warning, qualify `Alg` as `Algorithm.Alg` in the method signature or explicitly `import Algorithm: Alg`. Error encountered while load FileIO.File{FileIO.DataFormat{:JLD2}, String}("/tmp/jl_zuBGkt"). Fatal error: ERROR: LoadError: ConcurrencyViolationError("deadlock detected in loading JLD2 using JLD2") Stacktrace: [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2183 [2] start_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2191 [3] _require_prelocked(uuidkey::Base.PkgId, env::Nothing) @ Base ./loading.jl:2461 [4] _require_prelocked @ ./loading.jl:2460 [inlined] [5] macro expansion @ ./lock.jl:376 [inlined] [6] __require(uuidkey::Base.PkgId) @ Base ./loading.jl:2458 [7] require @ ./loading.jl:2456 [inlined] [8] #37 @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203 [inlined] [9] lock(f::FileIO.var"#37#38"{Base.PkgId}, l::ReentrantLock) @ Base ./lock.jl:335 [10] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203 [11] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined] [12] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined] [13] load(::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113 [14] load @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined] [15] #111 @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [inlined] [16] mktemp(fn::JLD2.var"#111#112"{Symbol, Vector{Float64}, NTuple{5, Int64}, String, Dict{String, Int64}, Matrix{ComplexF64}, Vector{Float64}, Float64, Int64}, parent::String) @ Base.Filesystem ./file.jl:870 [17] mktemp(fn::Function) @ Base.Filesystem ./file.jl:868 [18] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined] [19] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [20] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined] [21] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] [22] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:118 Stacktrace: [1] handle_error(e::ConcurrencyViolationError, q::Base.PkgId, bt::Vector{Union{Ptr{Nothing}, Base.InterpreterIP}}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:71 [2] handle_exceptions(exceptions::Vector{Tuple{Any, Union{Base.PkgId, Module}, Vector}}, action::String) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:66 [3] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:228 [4] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined] [5] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined] [6] load(::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113 [7] load @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined] [8] #111 @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [inlined] [9] mktemp(fn::JLD2.var"#111#112"{Symbol, Vector{Float64}, NTuple{5, Int64}, String, Dict{String, Int64}, Matrix{ComplexF64}, Vector{Float64}, Float64, Int64}, parent::String) @ Base.Filesystem ./file.jl:870 [10] mktemp(fn::Function) @ Base.Filesystem ./file.jl:868 [11] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined] [12] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [13] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined] [14] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] [15] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:118 [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [17] IncludeInto @ ./Base.jl:311 [inlined] [18] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/JLD2.jl:518 [19] include(mod::Module, _path::String) @ Base ./Base.jl:309 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3000 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [24] include_string @ ./loading.jl:2856 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [26] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/precompile.jl:3 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/JLD2.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile JLD2 [033835bb-8acc-5ee8-8aae-3f567f8a3819] to "/home/pkgeval/.julia/compiled/v1.13/JLD2/jl_sxSq6i" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3287 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1273 [8] #invokelatest_gr#232 @ ./reflection.jl:1281 [inlined] [9] invokelatest_gr @ ./reflection.jl:1275 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3858 [11] maybe_cachefile_lock @ ./loading.jl:3855 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [14] macro expansion @ ./loading.jl:2394 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [17] require @ ./loading.jl:2335 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [21] top-level scope @ ~/.julia/packages/MetaGraphs/qq8oz/src/MetaGraphs.jl:3 [22] include(mod::Module, _path::String) @ Base ./Base.jl:309 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3000 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [27] include_string @ ./loading.jl:2856 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [29] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/MetaGraphs/qq8oz/src/MetaGraphs.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile MetaGraphs [626554b9-1ddb-594c-aa3c-2596fe9399a5] to "/home/pkgeval/.julia/compiled/v1.13/MetaGraphs/jl_yoBQA1" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3287 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1273 [8] #invokelatest_gr#232 @ ./reflection.jl:1281 [inlined] [9] invokelatest_gr @ ./reflection.jl:1275 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3858 [11] maybe_cachefile_lock @ ./loading.jl:3855 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [14] macro expansion @ ./loading.jl:2394 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [17] require @ ./loading.jl:2335 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) @ Base ./module.jl:101 [21] top-level scope @ ~/.julia/packages/ImageSegmentation/pYW1e/src/ImageSegmentation.jl:11 [22] include(mod::Module, _path::String) @ Base ./Base.jl:309 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3000 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [27] include_string @ ./loading.jl:2856 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [29] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/ImageSegmentation/pYW1e/src/ImageSegmentation.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile ImageSegmentation [80713f31-8817-5129-9cf8-209ff8fb23e1] to "/home/pkgeval/.julia/compiled/v1.13/ImageSegmentation/jl_5N136B" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3287 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1273 [8] #invokelatest_gr#232 @ ./reflection.jl:1281 [inlined] [9] invokelatest_gr @ ./reflection.jl:1275 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3858 [11] maybe_cachefile_lock @ ./loading.jl:3855 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [14] macro expansion @ ./loading.jl:2394 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [17] require @ ./loading.jl:2335 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [21] top-level scope @ ~/.julia/packages/Images/Kttvj/src/Images.jl:29 [22] include(mod::Module, _path::String) @ Base ./Base.jl:309 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3000 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [27] include_string @ ./loading.jl:2856 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [29] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/Images/Kttvj/src/Images.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile Images [916415d5-f1e6-5110-898d-aaa5f9f070e0] to "/home/pkgeval/.julia/compiled/v1.13/Images/jl_QZM5Fa" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3287 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1273 [8] #invokelatest_gr#232 @ ./reflection.jl:1281 [inlined] [9] invokelatest_gr @ ./reflection.jl:1275 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3858 [11] maybe_cachefile_lock @ ./loading.jl:3855 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [14] macro expansion @ ./loading.jl:2394 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [17] require @ ./loading.jl:2335 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [21] top-level scope @ ~/.julia/packages/ImageUtils/QYR1c/src/ImageUtils.jl:20 [22] include(mod::Module, _path::String) @ Base ./Base.jl:309 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3000 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [27] include_string @ ./loading.jl:2856 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [29] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/ImageUtils/QYR1c/src/ImageUtils.jl:1 in expression starting at stdin:5 JLD2 Failed to precompile JLD2 [033835bb-8acc-5ee8-8aae-3f567f8a3819] to "/home/pkgeval/.julia/compiled/v1.13/JLD2/jl_eymQYm" (ProcessExited(1)). Error encountered while load FileIO.File{FileIO.DataFormat{:JLD2}, String}("/tmp/jl_LdwpW8"). Fatal error: ERROR: LoadError: ConcurrencyViolationError("deadlock detected in loading JLD2 using JLD2") Stacktrace: [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2183 [2] start_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2191 [3] _require_prelocked(uuidkey::Base.PkgId, env::Nothing) @ Base ./loading.jl:2461 [4] _require_prelocked @ ./loading.jl:2460 [inlined] [5] macro expansion @ ./lock.jl:376 [inlined] [6] __require(uuidkey::Base.PkgId) @ Base ./loading.jl:2458 [7] require @ ./loading.jl:2456 [inlined] [8] #37 @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203 [inlined] [9] lock(f::FileIO.var"#37#38"{Base.PkgId}, l::ReentrantLock) @ Base ./lock.jl:335 [10] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203 [11] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined] [12] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined] [13] load(::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113 [14] load @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined] [15] #111 @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [inlined] [16] mktemp(fn::JLD2.var"#111#112"{Symbol, Vector{Float64}, NTuple{5, Int64}, String, Dict{String, Int64}, Matrix{ComplexF64}, Vector{Float64}, Float64, Int64}, parent::String) @ Base.Filesystem ./file.jl:870 [17] mktemp(fn::Function) @ Base.Filesystem ./file.jl:868 [18] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined] [19] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [20] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined] [21] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] [22] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:118 Stacktrace: [1] handle_error(e::ConcurrencyViolationError, q::Base.PkgId, bt::Vector{Union{Ptr{Nothing}, Base.InterpreterIP}}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:71 [2] handle_exceptions(exceptions::Vector{Tuple{Any, Union{Base.PkgId, Module}, Vector}}, action::String) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:66 [3] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:228 [4] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined] [5] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined] [6] load(::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113 [7] load @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined] [8] #111 @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [inlined] [9] mktemp(fn::JLD2.var"#111#112"{Symbol, Vector{Float64}, NTuple{5, Int64}, String, Dict{String, Int64}, Matrix{ComplexF64}, Vector{Float64}, Float64, Int64}, parent::String) @ Base.Filesystem ./file.jl:870 [10] mktemp(fn::Function) @ Base.Filesystem ./file.jl:868 [11] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined] [12] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [13] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined] [14] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] [15] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:118 [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [17] IncludeInto @ ./Base.jl:311 [inlined] [18] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/JLD2.jl:518 [19] include(mod::Module, _path::String) @ Base ./Base.jl:309 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3000 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [24] include_string @ ./loading.jl:2856 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [26] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/precompile.jl:3 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/JLD2.jl:1 in expression starting at stdin:5 GIRFReco Failed to precompile GIRFReco [cf1bd817-9e2d-403d-b1e7-15ef5a867bae] to "/home/pkgeval/.julia/compiled/v1.13/GIRFReco/jl_XCIYdt" (ProcessExited(1)). WARNING: method definition for checkbounds at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/Interpolations.jl:454 declares type variable N but does not use it. WARNING: method definition for checkbounds at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/Interpolations.jl:457 declares type variable N but does not use it. WARNING: method definition for GriddedInterpolation at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/gridded/gridded.jl:37 declares type variable pad but does not use it. WARNING: method definition for GriddedInterpolation at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/gridded/gridded.jl:60 declares type variable pad but does not use it. WARNING: method definition for interpolate! at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/deprecations.jl:30 declares type variable TWeights but does not use it. WARNING: Constructor for type "Alg" was extended in `ImageFiltering` without explicit qualification or import. NOTE: Assumed "Alg" refers to `Algorithm.Alg`. This behavior is deprecated and may differ in future versions. NOTE: This behavior may have differed in Julia versions prior to 1.12. Hint: If you intended to create a new generic function of the same name, use `function Alg end`. Hint: To silence the warning, qualify `Alg` as `Algorithm.Alg` in the method signature or explicitly `import Algorithm: Alg`. Error encountered while load FileIO.File{FileIO.DataFormat{:JLD2}, String}("/tmp/jl_nMlbiV"). Fatal error: ERROR: LoadError: ConcurrencyViolationError("deadlock detected in loading JLD2 using JLD2") Stacktrace: [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2183 [2] start_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2191 [3] _require_prelocked(uuidkey::Base.PkgId, env::Nothing) @ Base ./loading.jl:2461 [4] _require_prelocked @ ./loading.jl:2460 [inlined] [5] macro expansion @ ./lock.jl:376 [inlined] [6] __require(uuidkey::Base.PkgId) @ Base ./loading.jl:2458 [7] require @ ./loading.jl:2456 [inlined] [8] #37 @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203 [inlined] [9] lock(f::FileIO.var"#37#38"{Base.PkgId}, l::ReentrantLock) @ Base ./lock.jl:335 [10] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203 [11] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined] [12] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined] [13] load(::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113 [14] load @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined] [15] #111 @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [inlined] [16] mktemp(fn::JLD2.var"#111#112"{Symbol, Vector{Float64}, NTuple{5, Int64}, String, Dict{String, Int64}, Matrix{ComplexF64}, Vector{Float64}, Float64, Int64}, parent::String) @ Base.Filesystem ./file.jl:870 [17] mktemp(fn::Function) @ Base.Filesystem ./file.jl:868 [18] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined] [19] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [20] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined] [21] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] [22] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:118 Stacktrace: [1] handle_error(e::ConcurrencyViolationError, q::Base.PkgId, bt::Vector{Union{Ptr{Nothing}, Base.InterpreterIP}}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:71 [2] handle_exceptions(exceptions::Vector{Tuple{Any, Union{Base.PkgId, Module}, Vector}}, action::String) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:66 [3] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:228 [4] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined] [5] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined] [6] load(::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113 [7] load @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined] [8] #111 @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [inlined] [9] mktemp(fn::JLD2.var"#111#112"{Symbol, Vector{Float64}, NTuple{5, Int64}, String, Dict{String, Int64}, Matrix{ComplexF64}, Vector{Float64}, Float64, Int64}, parent::String) @ Base.Filesystem ./file.jl:870 [10] mktemp(fn::Function) @ Base.Filesystem ./file.jl:868 [11] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined] [12] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [13] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined] [14] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] [15] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:118 [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [17] IncludeInto @ ./Base.jl:311 [inlined] [18] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/JLD2.jl:518 [19] include(mod::Module, _path::String) @ Base ./Base.jl:309 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3000 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [24] include_string @ ./loading.jl:2856 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [26] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/precompile.jl:3 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/JLD2.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile JLD2 [033835bb-8acc-5ee8-8aae-3f567f8a3819] to "/home/pkgeval/.julia/compiled/v1.13/JLD2/jl_l1BDYN" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3287 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1273 [8] #invokelatest_gr#232 @ ./reflection.jl:1281 [inlined] [9] invokelatest_gr @ ./reflection.jl:1275 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3858 [11] maybe_cachefile_lock @ ./loading.jl:3855 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [14] macro expansion @ ./loading.jl:2394 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [17] require @ ./loading.jl:2335 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [21] top-level scope @ ~/.julia/packages/MetaGraphs/qq8oz/src/MetaGraphs.jl:3 [22] include(mod::Module, _path::String) @ Base ./Base.jl:309 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3000 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [27] include_string @ ./loading.jl:2856 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [29] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/MetaGraphs/qq8oz/src/MetaGraphs.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile MetaGraphs [626554b9-1ddb-594c-aa3c-2596fe9399a5] to "/home/pkgeval/.julia/compiled/v1.13/MetaGraphs/jl_b6hKYk" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3287 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1273 [8] #invokelatest_gr#232 @ ./reflection.jl:1281 [inlined] [9] invokelatest_gr @ ./reflection.jl:1275 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3858 [11] maybe_cachefile_lock @ ./loading.jl:3855 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [14] macro expansion @ ./loading.jl:2394 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [17] require @ ./loading.jl:2335 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_import(::Bool, ::Module, ::Expr, ::Expr, ::Vararg{Expr}) @ Base ./module.jl:101 [21] top-level scope @ ~/.julia/packages/ImageSegmentation/pYW1e/src/ImageSegmentation.jl:11 [22] include(mod::Module, _path::String) @ Base ./Base.jl:309 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3000 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [27] include_string @ ./loading.jl:2856 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [29] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/ImageSegmentation/pYW1e/src/ImageSegmentation.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile ImageSegmentation [80713f31-8817-5129-9cf8-209ff8fb23e1] to "/home/pkgeval/.julia/compiled/v1.13/ImageSegmentation/jl_TiCFDX" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3287 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1273 [8] #invokelatest_gr#232 @ ./reflection.jl:1281 [inlined] [9] invokelatest_gr @ ./reflection.jl:1275 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3858 [11] maybe_cachefile_lock @ ./loading.jl:3855 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [14] macro expansion @ ./loading.jl:2394 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [17] require @ ./loading.jl:2335 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [21] top-level scope @ ~/.julia/packages/Images/Kttvj/src/Images.jl:29 [22] include(mod::Module, _path::String) @ Base ./Base.jl:309 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3000 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [27] include_string @ ./loading.jl:2856 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [29] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/Images/Kttvj/src/Images.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile Images [916415d5-f1e6-5110-898d-aaa5f9f070e0] to "/home/pkgeval/.julia/compiled/v1.13/Images/jl_NzZqa8" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3287 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1273 [8] #invokelatest_gr#232 @ ./reflection.jl:1281 [inlined] [9] invokelatest_gr @ ./reflection.jl:1275 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3858 [11] maybe_cachefile_lock @ ./loading.jl:3855 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [14] macro expansion @ ./loading.jl:2394 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [17] require @ ./loading.jl:2335 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [21] top-level scope @ ~/.julia/packages/ImageUtils/QYR1c/src/ImageUtils.jl:20 [22] include(mod::Module, _path::String) @ Base ./Base.jl:309 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3000 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [27] include_string @ ./loading.jl:2856 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [29] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/ImageUtils/QYR1c/src/ImageUtils.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile ImageUtils [8ad4436d-4835-5a14-8bce-3ae014d2950b] to "/home/pkgeval/.julia/compiled/v1.13/ImageUtils/jl_WMp7qt" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3287 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1273 [8] #invokelatest_gr#232 @ ./reflection.jl:1281 [inlined] [9] invokelatest_gr @ ./reflection.jl:1275 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3858 [11] maybe_cachefile_lock @ ./loading.jl:3855 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [14] macro expansion @ ./loading.jl:2394 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [17] require @ ./loading.jl:2335 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [21] top-level scope @ ~/.julia/packages/GIRFReco/7Na3s/src/GIRFReco.jl:17 [22] include(mod::Module, _path::String) @ Base ./Base.jl:309 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3000 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [27] include_string @ ./loading.jl:2856 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [29] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/GIRFReco/7Na3s/src/GIRFReco.jl:1 in expression starting at stdin:5 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 1688.38s ################################################################################ # Testing # Testing GIRFReco Status `/tmp/jl_LiOOQA/Project.toml` [cf1bd817] GIRFReco v0.1.7 ⌃ [8ad4436d] ImageUtils v0.2.9 ⌅ [033835bb] JLD2 v0.4.54 ⌅ [5a6f062f] MRIFiles v0.1.6 ⌅ [bdf86e05] MRIReco v0.7.1 [9be66c26] MRISampling v0.1.2 ⌃ [8988da37] MRISimulation v0.1.1 [6c6a2e73] Scratch v1.2.1 [10745b16] Statistics v1.11.1 [8dfed614] Test v1.11.0 Status `/tmp/jl_LiOOQA/Manifest.toml` [14f7f29c] AMD v0.5.3 [a4c015fc] ANSIColoredPrinters v0.0.1 [621f4979] AbstractFFTs v1.5.0 [7f219486] AbstractNFFTs v0.8.2 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.19.0 [a9b6321e] Atomix v1.1.1 ⌃ [13072b0f] AxisAlgorithms v1.0.1 [39de3d68] AxisArrays v0.4.7 [198e06fe] BangBang v0.4.4 [9718e550] Baselet v0.1.1 [26cce99e] BasicInterpolators v0.7.1 [d1d4a3ce] BitFlags v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [e1450e63] BufferedStreams v1.2.2 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.6 [00ebfdb7] CSTParser v3.4.3 [aafaddc9] CatIndices v0.2.2 [082447d4] ChainRules v1.72.3 [d360d2e6] ChainRulesCore v1.25.1 [aaaa29a8] Clustering v0.15.8 [944b1d66] CodecZlib v0.7.8 ⌃ [35d6a980] ColorSchemes v3.26.0 ⌅ [3da002f7] ColorTypes v0.11.5 ⌅ [c3611d14] ColorVectorSpace v0.9.10 ⌅ [5ae59095] Colors v0.12.11 ⌅ [a80b9123] CommonMark v0.8.16 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [ed09eef8] ComputationalResources v0.3.2 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.5.8 [6add18c4] ContextVariablesX v0.1.3 [d38c429a] Contour v0.6.3 [150eb455] CoordinateTransformations v0.6.4 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [dc8bdbbb] CustomUnitRanges v1.0.2 ⌅ [717857b8] DSP v0.7.10 [9a962f9c] DataAPI v1.16.0 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Graphs v1.12.1 [42e2da0e] Grisu v1.0.2 ⌅ [f67ccb44] HDF5 v0.16.16 [cd3eb016] HTTP v1.10.16 [076d061b] HashArrayMappedTries v0.2.0 [3e5b6fbb] HostCPUFeatures v0.1.17 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [7869d1d1] IRTools v0.4.14 [615f187c] IfElse v0.1.1 ⌃ [2803e5a7] ImageAxes v0.6.11 ⌃ [c817782e] ImageBase v0.1.5 [f332f351] ImageContrastAdjustment v0.3.12 ⌅ [a09fc81d] ImageCore v0.9.4 [51556ac3] ImageDistances v0.2.17 ⌃ [6a3955dd] ImageFiltering v0.7.6 ⌅ [9ee76f2b] ImageGeoms v0.10.1 ⌃ [82e4d734] ImageIO v0.6.8 ⌃ [6218d12a] ImageMagick v1.2.1 ⌃ [bc367c6b] ImageMetadata v0.9.9 ⌅ [787d08f9] ImageMorphology v0.3.2 [2996bd0c] ImageQualityIndexes v0.3.7 ⌃ [80713f31] ImageSegmentation v1.8.1 [4e3cecfd] ImageShow v0.3.8 ⌅ [02fcd773] ImageTransformations v0.9.5 ⌃ [8ad4436d] ImageUtils v0.2.9 ⌅ [916415d5] Images v0.25.3 [613c443e] IndexFunArrays v0.2.7 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.5 [22cec73e] InitialValues v0.3.1 [1d092043] 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... ✗ JLD2 68267.4 ms ✓ MRIGradients ✗ MetaGraphs ✗ ImageSegmentation ✗ Images ✗ ImageUtils Info Given GIRFReco was explicitly requested, output will be shown live  WARNING: method definition for checkbounds at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/Interpolations.jl:454 declares type variable N but does not use it. WARNING: method definition for checkbounds at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/Interpolations.jl:457 declares type variable N but does not use it. WARNING: method definition for GriddedInterpolation at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/gridded/gridded.jl:37 declares type variable pad but does not use it. WARNING: method definition for GriddedInterpolation at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/gridded/gridded.jl:60 declares type variable pad but does not use it. WARNING: method definition for interpolate! at /home/pkgeval/.julia/packages/Interpolations/USkTk/src/deprecations.jl:30 declares type variable TWeights but does not use it. WARNING: Constructor for type "Alg" was extended in `ImageFiltering` without explicit qualification or import.  NOTE: Assumed "Alg" refers to `Algorithm.Alg`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function Alg end`.  Hint: To silence the warning, qualify `Alg` as `Algorithm.Alg` in the method signature or explicitly `import Algorithm: Alg`.  ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ======================================================================================  cmd: /opt/julia/bin/julia 749 running 1 of 1  signal (10): User defined signal 1 jl_stat_blocks at /source/src/sys.c:196 stat at ./stat.jl:193 mtime at ./stat.jl:587 [inlined] sort_by at ./loading.jl:1216 _broadcast_getindex_evalf at ./broadcast.jl:701 [inlined] _broadcast_getindex at ./broadcast.jl:674 [inlined] _getindex at ./broadcast.jl:622 [inlined] getindex at ./broadcast.jl:618 [inlined] macro expansion at ./broadcast.jl:997 [inlined] macro expansion at ./simdloop.jl:77 [inlined] copyto! at ./broadcast.jl:996 [inlined] copyto! at ./broadcast.jl:949 [inlined] copy at ./broadcast.jl:921 [inlined] materialize at ./broadcast.jl:896 [inlined] find_all_in_cache_path at ./loading.jl:1227 #_require_search_from_serialized#884 at ./loading.jl:2042 _require_search_from_serialized at ./loading.jl:1982 jfptr__require_search_from_serialized_53388.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3597 [inlined] ijl_apply_generic at /source/src/gf.c:3797 __require_prelocked at ./loading.jl:2600 _require_prelocked at ./loading.jl:2466 macro expansion at ./loading.jl:2394 [inlined] macro expansion at ./lock.jl:376 [inlined] __require at ./loading.jl:2359 jfptr___require_76805.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3597 [inlined] ijl_apply_generic at /source/src/gf.c:3797 jl_apply at /source/src/julia.h:2340 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:896 require at ./loading.jl:2335 [inlined] eval_import_path at ./module.jl:36 [inlined] eval_import_path_all at ./module.jl:60 _eval_using at ./module.jl:137 jfptr__eval_using_67690.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3597 [inlined] ijl_apply_generic at /source/src/gf.c:3797 jl_apply at /source/src/julia.h:2340 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:241 eval_stmt_value at /source/src/interpreter.c:192 [inlined] eval_body at /source/src/interpreter.c:706 jl_interpret_toplevel_thunk at /source/src/interpreter.c:897 jl_toplevel_eval_flex at /source/src/toplevel.c:776 jl_eval_module_expr at /source/src/toplevel.c:200 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:661 jl_toplevel_eval_flex at /source/src/toplevel.c:716 ijl_toplevel_eval at /source/src/toplevel.c:788 ijl_toplevel_eval_in at /source/src/toplevel.c:833 eval at ./boot.jl:489 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3597 [inlined] ijl_apply_generic at /source/src/gf.c:3797 _include at ./loading.jl:2906 include at ./Base.jl:309 include_package_for_output at ./loading.jl:3000 jfptr_include_package_for_output_58186.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3597 [inlined] ijl_apply_generic at /source/src/gf.c:3797 jl_apply at /source/src/julia.h:2340 [inlined] do_call at /source/src/interpreter.c:123 eval_value at /source/src/interpreter.c:241 eval_stmt_value at /source/src/interpreter.c:192 [inlined] eval_body at /source/src/interpreter.c:706 jl_interpret_toplevel_thunk at /source/src/interpreter.c:897 jl_toplevel_eval_flex at /source/src/toplevel.c:776 jl_toplevel_eval_flex at /source/src/toplevel.c:716 ijl_toplevel_eval at /source/src/toplevel.c:788 ijl_toplevel_eval_in at /source/src/toplevel.c:833 eval at ./boot.jl:489 include_string at ./loading.jl:2846 include_string at ./loading.jl:2856 [inlined] exec_options at ./client.jl:329 _start at ./client.jl:564 jfptr__start_41699.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3597 [inlined] ijl_apply_generic at /source/src/gf.c:3797 jl_apply at /source/src/julia.h:2340 [inlined] true_main at /source/src/jlapi.c:963 jl_repl_entrypoint at /source/src/jlapi.c:1130 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7a466771a249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file)  ============================================================== Profile collected. A report will print at the next yield point ==============================================================   ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ======================================================================================  cmd: /opt/julia/bin/julia 725 running 0 of 1  signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_65422.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3597 [inlined] ijl_apply_generic at /source/src/gf.c:3797 jl_apply at /source/src/julia.h:2340 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file)  ============================================================== Profile collected. A report will print at the next yield point ==============================================================  ┌ Error: Profile printing listener crashed │ exception = │ This interactive function requires a stdlib to be loaded, and package code should instead use it directly from that stdlib. │ Stacktrace: │ [1] error(s::String) │ @ Base ./error.jl:44 │ [2] require_stdlib(package_uuidkey::Base.PkgId, ext::Nothing, from::Module) │ @ Base ./loading.jl:2761 │ [3] require_stdlib │ @ ./loading.jl:2757 [inlined] │ [4] macro expansion │ @ ./some.jl:158 [inlined] │ [5] profile_printing_listener(cond::Base.AsyncCondition) │ @ Base ./Base.jl:336 │ [6] (::Base.var"#start_profile_listener##0#start_profile_listener##1"{Base.AsyncCondition})() │ @ Base ./Base.jl:355 └ @ Base Base.jl:346  ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ======================================================================================  cmd: /opt/julia/bin/julia 697 running 0 of 1  signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_65422.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3597 [inlined] ijl_apply_generic at /source/src/gf.c:3797 jl_apply at /source/src/julia.h:2340 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file)  ============================================================== Profile collected. A report will print at the next yield point ==============================================================  ┌ Error: Profile printing listener crashed │ exception = │ This interactive function requires a stdlib to be loaded, and package code should instead use it directly from that stdlib. │ Stacktrace: │ [1] error(s::String) │ @ Base ./error.jl:44 │ [2] require_stdlib(package_uuidkey::Base.PkgId, ext::Nothing, from::Module) │ @ Base ./loading.jl:2761 │ [3] require_stdlib │ @ ./loading.jl:2757 [inlined] │ [4] macro expansion │ @ ./some.jl:158 [inlined] │ [5] profile_printing_listener(cond::Base.AsyncCondition) │ @ Base ./Base.jl:336 │ [6] (::Base.var"#start_profile_listener##0#start_profile_listener##1"{Base.AsyncCondition})() │ @ Base ./Base.jl:355 └ @ Base Base.jl:346  ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ======================================================================================  cmd: /opt/julia/bin/julia 681 running 0 of 1  signal (10): User defined signal 1 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_65422.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3597 [inlined] ijl_apply_generic at /source/src/gf.c:3797 jl_apply at /source/src/julia.h:2340 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file)  ============================================================== Profile collected. A report will print at the next yield point ==============================================================  ┌ Error: Profile printing listener crashed │ exception = │ This interactive function requires a stdlib to be loaded, and package code should instead use it directly from that stdlib. │ Stacktrace: │ [1] error(s::String) │ @ Base ./error.jl:44 │ [2] require_stdlib(package_uuidkey::Base.PkgId, ext::Nothing, from::Module) │ @ Base ./loading.jl:2761 │ [3] require_stdlib │ @ ./loading.jl:2757 [inlined] │ [4] macro expansion │ @ ./some.jl:158 [inlined] │ [5] profile_printing_listener(cond::Base.AsyncCondition) │ @ Base ./Base.jl:336 │ [6] (::Base.var"#start_profile_listener##0#start_profile_listener##1"{Base.AsyncCondition})() │ @ Base ./Base.jl:355 └ @ Base Base.jl:346 ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 564 running 0 of 2 signal (10): User defined signal 1 unknown function (ip: 0x7e8946afaf14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_65422.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3597 [inlined] ijl_apply_generic at /source/src/gf.c:3797 jl_apply at /source/src/julia.h:2340 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_65422.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3597 [inlined] ijl_apply_generic at /source/src/gf.c:3797 jl_apply at /source/src/julia.h:2340 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (interactive) Task 0x00007e892e1801f0 Total snapshots: 282. Utilization: 0% ╎282 @Base/task.jl:1150 wait_forever() 281╎ 282 @Base/task.jl:1216 wait() Thread 2 (default) Task 0x00007e89301fc100 Total snapshots: 282. Utilization: 0% ╎282 @Base/task.jl:1150 wait_forever() 281╎ 282 @Base/task.jl:1216 wait() ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 2 signal (10): User defined signal 1 unknown function (ip: 0x77c9a3481f14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_65422.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3597 [inlined] ijl_apply_generic at /source/src/gf.c:3797 jl_apply at /source/src/julia.h:2340 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_65422.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3597 [inlined] ijl_apply_generic at /source/src/gf.c:3797 jl_apply at /source/src/julia.h:2340 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (interactive) Task 0x000077c98cb024a0 Total snapshots: 319. Utilization: 0% ╎319 @Base/task.jl:1150 wait_forever() 318╎ 319 @Base/task.jl:1216 wait() Thread 2 (default) Task 0x000077c98cbfc100 Total snapshots: 319. Utilization: 0% ╎319 @Base/task.jl:1150 wait_forever() 318╎ 319 @Base/task.jl:1216 wait() [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 unknown function (ip: 0x77c9a3481f14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520  [681] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/GIRFReco/7Na3s/src/GIRFReco.jl:17 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 [564] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/GIRFReco/7Na3s/test/runtests.jl:1 unknown function (ip: 0x7e8946afaf14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 wait at ./task.jl:1216 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 wait_forever at ./task.jl:1150 jfptr_wait_forever_65422.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3597 [inlined] ijl_apply_generic at /source/src/gf.c:3797 jfptr_wait_forever_65422.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3597 [inlined] ijl_apply_generic at /source/src/gf.c:3797 jl_apply at /source/src/julia.h:2340 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) jl_apply at /source/src/julia.h:2340 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 wait at ./task.jl:1216 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 wait_forever at ./task.jl:1150 jfptr_wait_forever_65422.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3597 [inlined] ijl_apply_generic at /source/src/gf.c:3797 jl_apply at /source/src/julia.h:2340 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) Allocations: 27552280 (Pool: 27552034; Big: 246); GC: 61 jfptr_wait_forever_65422.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3597 [inlined] ijl_apply_generic at /source/src/gf.c:3797 jl_apply at /source/src/julia.h:2340 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) Allocations: 33227423 (Pool: 33226753; Big: 670); GC: 30  [697] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/ImageUtils/QYR1c/src/ImageUtils.jl:20 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454  [725] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/Images/Kttvj/src/Images.jl:29 epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454  [765] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/ImageSegmentation/pYW1e/src/ImageSegmentation.jl:8 _ZN4llvm12MachineInstrC1ERNS_15MachineFunctionERKNS_11MCInstrDescENS_8DebugLocEb at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) unknown function (ip: (nil)) at (unknown file) Allocations: 4346903 (Pool: 4346785; Big: 118); GC: 6 wait at ./task.jl:1216 wait at ./task.jl:1216 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 wait_forever at ./task.jl:1150 wait_forever at ./task.jl:1150 jfptr_wait_forever_65422.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3597 [inlined] ijl_apply_generic at /source/src/gf.c:3797 jfptr_wait_forever_65422.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3597 [inlined] ijl_apply_generic at /source/src/gf.c:3797 jfptr_wait_forever_65422.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3597 [inlined] ijl_apply_generic at /source/src/gf.c:3797 jl_apply at /source/src/julia.h:2340 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) Allocations: 10840908 (Pool: 10840756; Big: 152); GC: 13 jl_apply at /source/src/julia.h:2340 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) Allocations: 12436157 (Pool: 12435920; Big: 237); GC: 20 jl_apply at /source/src/julia.h:2340 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) Allocations: 13412553 (Pool: 13412294; Big: 259); GC: 13 val already in a list atexit hook threw an error: ErrorException("schedule: Task not runnable") error at ./error.jl:44 #schedule#595 at ./task.jl:1035 schedule at ./task.jl:1027 [inlined] uv_writecb_task at ./stream.jl:1200 jlcapi_uv_writecb_task_16106.1 at /opt/julia/lib/julia/sys.so (unknown line) uv__write_callbacks at /workspace/srcdir/libuv/src/unix/stream.c:926 uv__stream_io at /workspace/srcdir/libuv/src/unix/stream.c:1227 uv__run_pending at /workspace/srcdir/libuv/src/unix/core.c:824 uv_run at /workspace/srcdir/libuv/src/unix/core.c:420 ijl_process_events at /source/src/jl_uv.c:393 process_events at ./libuv.jl:126 [inlined] wait at ./task.jl:1201 uv_write at ./stream.jl:1081 unsafe_write at ./stream.jl:1154 write at ./strings/io.jl:242 [inlined] print at ./strings/io.jl:244 jfptr_print_67452.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3597 [inlined] ijl_apply_generic at /source/src/gf.c:3797 showerror at ./errorshow.jl:161 unknown function (ip: 0x7e8945540946) at (unknown file) _jl_invoke at /source/src/gf.c:3597 [inlined] ijl_apply_generic at /source/src/gf.c:3797 _atexit at ./initdefs.jl:467 unknown function (ip: 0x7e89455408b4) at (unknown file) _jl_invoke at /source/src/gf.c:3597 [inlined] ijl_apply_generic at /source/src/gf.c:3797 jl_apply at /source/src/julia.h:2340 [inlined] ijl_atexit_hook at /source/src/init.c:260 jl_exit_thread0_cb at /source/src/signals-unix.c:564 PkgEval terminated after 2764.51s: test duration exceeded the time limit