Package evaluation of Cloudy on Julia 1.13.0-DEV.655 (3a5e1f15ec*) started at 2025-05-29T20:35:21.336 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.42s ################################################################################ # Installation # Installing Cloudy... Resolving package versions... Installed AbstractTrees ────────────── v0.4.5 Installed Adapt ────────────────────── v4.3.0 Installed DiffResults ──────────────── v1.1.0 Installed MacroTools ───────────────── v0.5.16 Installed FillArrays ───────────────── v1.13.0 Installed ForwardDiff ──────────────── v1.0.1 Installed Cloudy ───────────────────── v0.5.6 Installed ConstructionBase ─────────── v1.5.8 Installed Compat ───────────────────── v4.16.0 Installed OrderedCollections ───────── v1.8.1 Installed AliasTables ──────────────── v1.1.3 Installed ArrayInterface ───────────── v7.19.0 Installed StatsBase ────────────────── v0.34.5 Installed DataStructures ───────────── v0.18.22 Installed Optim ────────────────────── v1.12.0 Installed ProgressLogging ──────────── v0.1.4 Installed DataAPI ──────────────────── v1.16.0 Installed PositiveFactorizations ───── v0.2.4 Installed Statistics ───────────────── v1.11.1 Installed StatsAPI ─────────────────── v1.7.1 Installed CommonSubexpressions ─────── v0.3.1 Installed StaticArraysCore ─────────── v1.4.3 Installed StaticArrays ─────────────── v1.9.13 Installed PrecompileTools ──────────── v1.3.2 Installed IrrationalConstants ──────── v0.2.4 Installed QuadGK ───────────────────── v2.11.2 Installed NaNMath ──────────────────── v1.1.3 Installed Requires ─────────────────── v1.3.1 Installed OpenSpecFun_jll ──────────── v0.5.6+0 Installed LogExpFunctions ──────────── v0.3.29 Installed LeftChildRightSiblingTrees ─ v0.2.0 Installed DiffRules ────────────────── v1.15.1 Installed PtrArrays ────────────────── v1.3.0 Installed FiniteDiff ───────────────── v2.27.0 Installed Parameters ───────────────── v0.12.3 Installed TerminalLoggers ──────────── v0.1.7 Installed Missings ─────────────────── v1.2.0 Installed NLSolversBase ────────────── v7.9.1 Installed EnumX ────────────────────── v1.0.5 Installed Setfield ─────────────────── v1.1.2 Installed JLLWrappers ──────────────── v1.7.0 Installed SpecialFunctions ─────────── v2.5.1 Installed SortingAlgorithms ────────── v1.2.1 Installed Preferences ──────────────── v1.4.3 Installed UnPack ───────────────────── v1.0.2 Installed ADTypes ──────────────────── v1.14.0 Installed LineSearches ─────────────── v7.3.0 Installed DocStringExtensions ──────── v0.9.4 Installed DifferentiationInterface ─── v0.6.54 Installing 1 artifacts Installed artifact OpenSpecFun 194.9 KiB Updating `~/.julia/environments/v1.13/Project.toml` [9e3b23bb] + Cloudy v0.5.6 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [4fba245c] + ArrayInterface v7.19.0 [9e3b23bb] + Cloudy v0.5.6 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [187b0558] + ConstructionBase v1.5.8 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 ⌅ [a0c0ee7d] + DifferentiationInterface v0.6.54 [ffbed154] + DocStringExtensions v0.9.4 [4e289a0a] + EnumX v1.0.5 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [f6369f11] + ForwardDiff v1.0.1 [92d709cd] + IrrationalConstants v0.2.4 [692b3bcd] + JLLWrappers v1.7.0 [1d6d02ad] + LeftChildRightSiblingTrees v0.2.0 [d3d80556] + LineSearches v7.3.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [e1d29d7a] + Missings v1.2.0 [d41bc354] + NLSolversBase v7.9.1 [77ba4419] + NaNMath v1.1.3 [429524aa] + Optim v1.12.0 [bac558e1] + OrderedCollections v1.8.1 [d96e819e] + Parameters v0.12.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [33c8b6b6] + ProgressLogging v0.1.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [ae029012] + Requires v1.3.1 [efcf1570] + Setfield v1.1.2 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.1 [2913bbd2] + StatsBase v0.34.5 [5d786b92] + TerminalLoggers v0.1.7 [3a884ed6] + UnPack v1.0.2 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.12.0+0 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 8.15s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 5084.3 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 25 already precompiled. Precompiling package dependencies... ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 60 running 0 of 2 signal (10): User defined signal 1 unknown function (ip: 0x702b8a917f14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_65422.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3597 [inlined] ijl_apply_generic at /source/src/gf.c:3797 jl_apply at /source/src/julia.h:2340 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_65422.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3597 [inlined] ijl_apply_generic at /source/src/gf.c:3797 jl_apply at /source/src/julia.h:2340 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (interactive) Task 0x0000702b718f9960 Total snapshots: 247. Utilization: 0% ╎247 @Base/task.jl:1150 wait_forever() 246╎ 247 @Base/task.jl:1216 wait() Thread 2 (default) Task 0x0000702b73ffc100 Total snapshots: 247. Utilization: 0% ╎247 @Base/task.jl:1150 wait_forever() 246╎ 247 @Base/task.jl:1216 wait() ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 2 signal (10): User defined signal 1 unknown function (ip: 0x7009c1771f14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_65422.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3597 [inlined] ijl_apply_generic at /source/src/gf.c:3797 jl_apply at /source/src/julia.h:2340 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_65422.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3597 [inlined] ijl_apply_generic at /source/src/gf.c:3797 jl_apply at /source/src/julia.h:2340 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (interactive) Task 0x00007009a9d0fc10 Total snapshots: 204. Utilization: 0% ╎204 @Base/task.jl:1150 wait_forever() 203╎ 204 @Base/task.jl:1216 wait() Thread 2 (default) Task 0x00007009aadfc100 Total snapshots: 204. Utilization: 0% ╎204 @Base/task.jl:1150 wait_forever() 203╎ 204 @Base/task.jl:1216 wait() [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:152 unknown function (ip: 0x7009c1771f14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 [60] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/precompile.jl:37 unknown function (ip: 0x702b8a917f14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 wait at ./task.jl:1216 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 wait_forever at ./task.jl:1150 jfptr_wait_forever_65422.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3597 [inlined] ijl_apply_generic at /source/src/gf.c:3797 jl_apply at /source/src/julia.h:2340 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) jfptr_wait_forever_65422.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3597 [inlined] ijl_apply_generic at /source/src/gf.c:3797 jl_apply at /source/src/julia.h:2340 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 wait at ./task.jl:1216 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 wait_forever at ./task.jl:1150 jfptr_wait_forever_65422.1 at /opt/julia/lib/julia/sys.so (unknown line) jfptr_wait_forever_65422.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3597 [inlined] ijl_apply_generic at /source/src/gf.c:3797 _jl_invoke at /source/src/gf.c:3597 [inlined] ijl_apply_generic at /source/src/gf.c:3797 jl_apply at /source/src/julia.h:2340 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) Allocations: 14267615 (Pool: 14267033; Big: 582); GC: 14 jl_apply at /source/src/julia.h:2340 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) Allocations: 23178920 (Pool: 23176773; Big: 2147); GC: 97 val already in a list atexit hook threw an error: ErrorException("schedule: Task not runnable") error at ./error.jl:44 #schedule#595 at ./task.jl:1035 schedule at ./task.jl:1027 [inlined] uv_writecb_task at ./stream.jl:1200 jlcapi_uv_writecb_task_16106.1 at /opt/julia/lib/julia/sys.so (unknown line) uv__write_callbacks at /workspace/srcdir/libuv/src/unix/stream.c:926 uv__stream_io at /workspace/srcdir/libuv/src/unix/stream.c:1227 uv__run_pending at /workspace/srcdir/libuv/src/unix/core.c:824 uv_run at /workspace/srcdir/libuv/src/unix/core.c:420 ijl_process_events at /source/src/jl_uv.c:393 process_events at ./libuv.jl:126 [inlined] wait at ./task.jl:1201 uv_write at ./stream.jl:1081 unsafe_write at ./stream.jl:1154 write at ./strings/io.jl:242 [inlined] print at ./strings/io.jl:244 jfptr_print_67452.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3597 [inlined] ijl_apply_generic at /source/src/gf.c:3797 showerror at ./errorshow.jl:161 unknown function (ip: 0x702b88560e06) at (unknown file) _jl_invoke at /source/src/gf.c:3597 [inlined] ijl_apply_generic at /source/src/gf.c:3797 _atexit at ./initdefs.jl:467 unknown function (ip: 0x702b88560d74) at (unknown file) _jl_invoke at /source/src/gf.c:3597 [inlined] ijl_apply_generic at /source/src/gf.c:3797 jl_apply at /source/src/julia.h:2340 [inlined] ijl_atexit_hook at /source/src/init.c:260 jl_exit_thread0_cb at /source/src/signals-unix.c:564 PkgEval terminated after 2733.63s: test duration exceeded the time limit