Package evaluation of StatsModels on Julia 1.13.0-DEV.640 (0a970d81aa*) started at 2025-05-27T15:40:44.511 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 7.69s ################################################################################ # Installation # Installing StatsModels... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [3eaba693] + StatsModels v0.7.4 Updating `~/.julia/environments/v1.13/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [34da2185] + Compat v4.16.0 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [ffbed154] + DocStringExtensions v0.9.4 [34004b35] + HypergeometricFunctions v0.3.28 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [e1d29d7a] + Missings v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [21216c6a] + Preferences v1.4.3 [43287f4e] + PtrArrays v1.3.0 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.8.0 [1277b4bf] + ShiftedArrays v2.0.0 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 [2913bbd2] + StatsBase v0.34.5 [4c63d2b9] + StatsFuns v1.5.0 [3eaba693] + StatsModels v0.7.4 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [d6f4376e] + Markdown v1.11.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [8e850b90] + libblastrampoline_jll v5.12.0+0 Installation completed after 4.1s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling package dependencies... Precompilation completed after 16.84s ################################################################################ # Testing # Testing StatsModels Status `/tmp/jl_WUC3YL/Project.toml` ⌅ [4c88cf16] Aqua v0.7.4 [324d7699] CategoricalArrays v0.10.8 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [1277b4bf] ShiftedArrays v2.0.0 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [3eaba693] StatsModels v0.7.4 [bd369af6] Tables v1.12.0 [98d24dd4] TestSetExtensions v3.0.0 [ea10d353] WeakRefStrings v1.4.2 [37e2e46d] LinearAlgebra v1.12.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_WUC3YL/Manifest.toml` [66dad0bd] AliasTables v1.1.3 ⌅ [4c88cf16] Aqua v0.7.4 [324d7699] CategoricalArrays v0.10.8 [34da2185] Compat v4.16.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [ab62b9b5] DeepDiffs v1.2.0 [ffbed154] DocStringExtensions v0.9.4 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.3 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [e1d29d7a] Missings v1.2.0 [bac558e1] OrderedCollections v1.8.1 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [43287f4e] PtrArrays v1.3.0 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [91c51154] SentinelArrays v1.4.8 [1277b4bf] ShiftedArrays v2.0.0 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.1 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 [2913bbd2] StatsBase v0.34.5 [4c63d2b9] StatsFuns v1.5.0 [3eaba693] StatsModels v0.7.4 [892a3eda] StringManipulation v0.4.1 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [98d24dd4] TestSetExtensions v3.0.0 [ea10d353] WeakRefStrings v1.4.2 [efe28fd5] OpenSpecFun_jll v0.5.6+0 [f50d1b31] Rmath_jll v0.5.1+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.12.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. Testing Running tests... Precompiling packages... 1252.3 ms ✓ CategoricalArrays → CategoricalArraysSentinelArraysExt 1 dependency successfully precompiled in 1 seconds. 11 already precompiled. .┌ Warning: `isbindingresolved(m::Module, var::Symbol)` is deprecated, use `true` instead. │ caller = walkmodules(f::Aqua.var"#undefined_exports##0#undefined_exports##1"{Vector{Symbol}}, x::Module) at exports.jl:5 └ @ Core ~/.julia/packages/Aqua/rmHe1/src/exports.jl:5 ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... ===================================================== 1 arg form: Test Failed at /home/pkgeval/.julia/packages/StatsModels/mPD8T/test/temporal_terms.jl:29 Expression: (coefnames(f))[2] == "x_lag1" Evaluated: ["x_lag1"] == "x_lag1" Stacktrace: [1] top-level scope @ ~/.julia/packages/StatsModels/mPD8T/test/temporal_terms.jl:7 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1833 [inlined] [3] macro expansion @ ~/.julia/packages/StatsModels/mPD8T/test/temporal_terms.jl:8 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1833 [inlined] [5] macro expansion @ ~/.julia/packages/StatsModels/mPD8T/test/temporal_terms.jl:23 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1833 [inlined] [7] macro expansion @ ~/.julia/packages/StatsModels/mPD8T/test/temporal_terms.jl:29 [inlined] [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:730 [inlined] ===================================================== ... ===================================================== Negative lag: Test Failed at /home/pkgeval/.julia/packages/StatsModels/mPD8T/test/temporal_terms.jl:56 Expression: (coefnames(neg_f))[2] == "x_lag-2" Evaluated: ["x_lag-2"] == "x_lag-2" Stacktrace: [1] top-level scope @ ~/.julia/packages/StatsModels/mPD8T/test/temporal_terms.jl:7 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1833 [inlined] [3] macro expansion @ ~/.julia/packages/StatsModels/mPD8T/test/temporal_terms.jl:8 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1833 [inlined] [5] macro expansion @ ~/.julia/packages/StatsModels/mPD8T/test/temporal_terms.jl:50 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1833 [inlined] [7] macro expansion @ ~/.julia/packages/StatsModels/mPD8T/test/temporal_terms.jl:56 [inlined] [8] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:730 [inlined] ===================================================== ........................................................................................................................................ ===================================================== #185 - interactions of scalar terms for row tables: Test Failed Expression: vec(modelcols(f.rhs, t)) == modelcols.(Ref(f.rhs), Tables.rowtable(t)) Diff: [(-)0.0007837643722011543, (-)0.13151747322537377, (-)0.002256712040480689, (-)0.00035553181150970267, (-)0.10416920995307001, (-)0.15180549193650628, (-)0.04819456997408929, (-)0.0004367005794502611, (-)0.05266489552665674, (-)0.05024179364045822, (+)[0.0007837643722011543], (+)[0.13151747322537377], (+)[0.002256712040480689], (+)[0.00035553181150970267], (+)[0.10416920995307001], (+)[0.15180549193650628], (+)[0.04819456997408929], (+)[0.0004367005794502611], (+)[0.05266489552665674], (+)[0.05024179364045822]] Stacktrace: [1] top-level scope @ ~/.julia/packages/StatsModels/mPD8T/test/modelmatrix.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1833 [inlined] [3] macro expansion @ ~/.julia/packages/StatsModels/mPD8T/test/modelmatrix.jl:401 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1833 [inlined] [5] macro expansion @ ~/.julia/packages/StatsModels/mPD8T/test/modelmatrix.jl:403 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:730 [inlined] ===================================================== ..........................................................................┌ Warning: The `termnames` field of `ConstrastsMatrix` is deprecated; use `coefnames(cm)` instead. │ caller = ip:0x0 └ @ Core :-1 ..............................................................................................................Precompiling packages... 981.3 ms ✓ InlineStrings → ParsersExt 2068.6 ms ✓ WeakRefStrings 2 dependencies successfully precompiled in 3 seconds. 10 already precompiled. ===================================================== other string types: Stacktrace: [1] top-level scope @ ~/.julia/packages/StatsModels/mPD8T/test/contrasts.jl:3 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1833 [inlined] [3] macro expansion @ ~/.julia/packages/StatsModels/mPD8T/test/contrasts.jl:361 [inlined] [4] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1833 [inlined] [5] macro expansion @ ~/.julia/packages/StatsModels/mPD8T/test/contrasts.jl:370 [inlined] [6] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:730 [inlined] ===================================================== ===================================================== other string types: Error During Test at /home/pkgeval/.julia/packages/StatsModels/mPD8T/test/contrasts.jl:360 Got exception outside of a @test ArgumentError: contrasts levels not found in data or vice-versa: ["a", "b", "c"]. Data levels (String1): String1["a", "b", "c"]. Contrast levels (String): ["a", "b", "c"] Stacktrace: [1] ContrastsMatrix(contrasts::DummyCoding, levels::Vector{String1}) @ StatsModels ~/.julia/packages/StatsModels/mPD8T/src/contrasts.jl:174 [2] top-level scope @ ~/.julia/packages/StatsModels/mPD8T/test/contrasts.jl:3 [3] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1833 [inlined] [4] macro expansion @ ~/.julia/packages/StatsModels/mPD8T/test/contrasts.jl:361 [inlined] [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1833 [inlined] [6] macro expansion @ ~/.julia/packages/StatsModels/mPD8T/test/contrasts.jl:373 [inlined] [7] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [8] macro expansion @ ~/.julia/packages/StatsModels/mPD8T/test/runtests.jl:39 [inlined] [9] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1833 [inlined] [10] top-level scope @ ~/.julia/packages/StatsModels/mPD8T/test/runtests.jl:31 [11] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [12] top-level scope @ none:6 [13] eval(m::Module, e::Any) @ Core ./boot.jl:489 [14] exec_options(opts::Base.JLOptions) @ Base ./client.jl:297 [15] _start() @ Base ./client.jl:564 ===================================================== ........................................................................................................... Test Summary: | Pass Fail Error Broken Total Time StatsModels | 936 4 1 9 950 8m20.5s aqua | 8 8 1m00.7s Ambiguity detection | 1 1 0.9s formula | 61 61 11.1s terms | 430 430 16.5s Temporal Terms | 34 2 2 38 25.9s Lag | 23 2 2 27 23.1s Basic use | 5 5 4.7s 1 arg form | 1 1 2 6.6s Row Table | 1 1 1.3s Nested Use | 1 1 0.5s Negative lag | 1 1 2 0.2s Categorical Term use | 3 3 4.5s Diff Demo | 2 2 4 4.2s Unhappy path | 2 2 0.6s Programmatic construction | 7 7 0.5s Lead | 11 11 2.8s schemas | 28 28 16.6s Model matrix | 83 1 2 86 3m09.5s non-redundant categorical terms | 22 2 24 25.7s arbitrary functions in formulae | 5 5 8.2s row-wise model matrix construction | 1 1 27.9s modelmatrix and response set schema if needed | 2 2 7.3s setcontrasts! | 3 3 13.4s #136 | 1 1 0.0s #185 - interactions of scalar terms for row tables | 1 1 9.8s ModelFrame (legacy API) | 2 2 3.3s stat model types | 35 35 40.1s termnames | 13 13 2.3s lrtest | 23 23 10.6s contrasts | 116 1 1 118 1m14.5s hypothesis coding | 4 4 13.6s hypothesis_matrix | 12 12 7.1s levels and baselevel | 42 42 0.4s Non-unique levels | 1 1 0.0s other string types | 1 1 2 9.2s other matrix types | 5 5 4.3s Extended formula/models | 25 2 27 12.2s Model traits | 35 1 36 2.5s Protection | 30 2 32 15.6s VIF input checks | 3 3 5.8s GVIF and VIF are the same for continuous predictors | 2 2 6.2s GVIF | 2 2 1.0s utils | 5 5 0.0s ERROR: LoadError: Some tests did not pass: 936 passed, 4 failed, 1 errored, 9 broken. in expression starting at /home/pkgeval/.julia/packages/StatsModels/mPD8T/test/runtests.jl:30 Testing failed after 541.79s ERROR: LoadError: Package StatsModels errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2421 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2276 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:498 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:309 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:331 [12] _start() @ Base ./client.jl:564 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 593.43s: package tests unexpectedly errored