Package evaluation of OnlinePCA on Julia 1.13.0-DEV.636 (2bd37fbbab*) started at 2025-05-27T21:20:14.194


################################################################################
# Set-up
#

Installing PkgEval dependencies (TestEnv)...

Set-up completed after 9.59s


################################################################################
# Installation
#

Installing OnlinePCA...
   Resolving package versions...
   Installed Rmath_jll ─────────────────── v0.5.1+0
   Installed CodecZstd ─────────────────── v0.8.6
   Installed StatsModels ───────────────── v0.7.4
   Installed InlineStrings ─────────────── v1.4.3
   Installed DataStructures ────────────── v0.18.22
   Installed FillArrays ────────────────── v1.13.0
   Installed GLM ───────────────────────── v1.9.0
   Installed DelimitedFiles ────────────── v1.9.1
   Installed libaec_jll ────────────────── v1.1.3+0
   Installed AliasTables ───────────────── v1.1.3
   Installed StatsBase ─────────────────── v0.34.5
   Installed HypergeometricFunctions ───── v0.3.28
   Installed CodecZlib ─────────────────── v0.7.8
   Installed MPICH_jll ─────────────────── v4.3.0+1
   Installed TranscodingStreams ────────── v0.11.3
   Installed MicrosoftMPI_jll ──────────── v10.1.4+3
   Installed ShiftedArrays ─────────────── v2.0.0
   Installed OrderedCollections ────────── v1.8.1
   Installed DataAPI ───────────────────── v1.16.0
   Installed InvertedIndices ───────────── v1.3.1
   Installed StatsAPI ──────────────────── v1.7.0
   Installed Compat ────────────────────── v4.16.0
   Installed IteratorInterfaceExtensions ─ v1.0.0
   Installed DataValueInterfaces ───────── v1.0.0
   Installed OnlinePCA ─────────────────── v0.3.9
   Installed Statistics ────────────────── v1.11.1
   Installed PrecompileTools ───────────── v1.3.2
   Installed ProgressMeter ─────────────── v1.10.4
   Installed SentinelArrays ────────────── v1.4.8
   Installed IrrationalConstants ───────── v0.2.4
   Installed StringManipulation ────────── v0.4.1
   Installed QuadGK ────────────────────── v2.11.2
   Installed Requires ──────────────────── v1.3.1
   Installed OpenSpecFun_jll ───────────── v0.5.6+0
   Installed TextWrap ──────────────────── v1.0.2
   Installed ArgParse ──────────────────── v1.2.0
   Installed LogExpFunctions ───────────── v0.3.29
   Installed HDF5_jll ──────────────────── v1.14.6+0
   Installed OpenMPI_jll ───────────────── v5.0.7+2
   Installed Hwloc_jll ─────────────────── v2.12.1+0
   Installed Rmath ─────────────────────── v0.8.0
   Installed MatrixMarket ──────────────── v0.5.2
   Installed StatsFuns ─────────────────── v1.5.0
   Installed PrettyTables ──────────────── v2.4.0
   Installed Distributions ─────────────── v0.25.120
   Installed Tables ────────────────────── v1.12.0
   Installed Reexport ──────────────────── v1.2.2
   Installed SpecialFunctions ──────────── v2.5.1
   Installed PtrArrays ─────────────────── v1.3.0
   Installed Missings ──────────────────── v1.2.0
   Installed Preferences ───────────────── v1.4.3
   Installed DataFrames ────────────────── v1.7.0
   Installed PooledArrays ──────────────── v1.4.3
   Installed JLLWrappers ───────────────── v1.7.0
   Installed TableTraits ───────────────── v1.0.1
   Installed MPIPreferences ────────────── v0.1.11
   Installed Crayons ───────────────────── v4.1.1
   Installed LaTeXStrings ──────────────── v1.4.0
   Installed HDF5 ──────────────────────── v0.17.2
   Installed PDMats ────────────────────── v0.11.35
   Installed SortingAlgorithms ─────────── v1.2.1
   Installed MPItrampoline_jll ─────────── v5.5.3+0
   Installed DocStringExtensions ───────── v0.9.4
  Installing 6 artifacts
   Installed artifact libaec      96.2 KiB
   Installed artifact OpenSpecFun 194.9 KiB
   Installed artifact Rmath       121.9 KiB
   Installed artifact Hwloc       3.5 MiB
   Installed artifact MPICH       3.3 MiB
   Installed artifact HDF5        5.7 MiB
    Updating `~/.julia/environments/v1.13/Project.toml`
  [975b03d1] + OnlinePCA v0.3.9
    Updating `~/.julia/environments/v1.13/Manifest.toml`
  [66dad0bd] + AliasTables v1.1.3
  [c7e460c6] + ArgParse v1.2.0
  [944b1d66] + CodecZlib v0.7.8
  [6b39b394] + CodecZstd v0.8.6
  [34da2185] + Compat v4.16.0
  [a8cc5b0e] + Crayons v4.1.1
  [9a962f9c] + DataAPI v1.16.0
  [a93c6f00] + DataFrames v1.7.0
  [864edb3b] + DataStructures v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [8bb1440f] + DelimitedFiles v1.9.1
  [31c24e10] + Distributions v0.25.120
  [ffbed154] + DocStringExtensions v0.9.4
  [1a297f60] + FillArrays v1.13.0
  [38e38edf] + GLM v1.9.0
  [f67ccb44] + HDF5 v0.17.2
  [34004b35] + HypergeometricFunctions v0.3.28
  [842dd82b] + InlineStrings v1.4.3
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] + IrrationalConstants v0.2.4
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] + JLLWrappers v1.7.0
  [b964fa9f] + LaTeXStrings v1.4.0
  [2ab3a3ac] + LogExpFunctions v0.3.29
  [3da0fdf6] + MPIPreferences v0.1.11
  [4d4711f2] + MatrixMarket v0.5.2
  [e1d29d7a] + Missings v1.2.0
  [975b03d1] + OnlinePCA v0.3.9
  [bac558e1] + OrderedCollections v1.8.1
  [90014a1f] + PDMats v0.11.35
  [2dfb63ee] + PooledArrays v1.4.3
  [aea7be01] + PrecompileTools v1.3.2
  [21216c6a] + Preferences v1.4.3
  [08abe8d2] + PrettyTables v2.4.0
  [92933f4c] + ProgressMeter v1.10.4
  [43287f4e] + PtrArrays v1.3.0
  [1fd47b50] + QuadGK v2.11.2
  [189a3867] + Reexport v1.2.2
  [ae029012] + Requires v1.3.1
  [79098fc4] + Rmath v0.8.0
  [91c51154] + SentinelArrays v1.4.8
  [1277b4bf] + ShiftedArrays v2.0.0
  [a2af1166] + SortingAlgorithms v1.2.1
  [276daf66] + SpecialFunctions v2.5.1
  [10745b16] + Statistics v1.11.1
  [82ae8749] + StatsAPI v1.7.0
  [2913bbd2] + StatsBase v0.34.5
  [4c63d2b9] + StatsFuns v1.5.0
  [3eaba693] + StatsModels v0.7.4
  [892a3eda] + StringManipulation v0.4.1
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.0
  [b718987f] + TextWrap v1.0.2
  [3bb67fe8] + TranscodingStreams v0.11.3
  [0234f1f7] + HDF5_jll v1.14.6+0
  [e33a78d0] + Hwloc_jll v2.12.1+0
  [7cb0a576] + MPICH_jll v4.3.0+1
  [f1f71cc9] + MPItrampoline_jll v5.5.3+0
  [9237b28f] + MicrosoftMPI_jll v10.1.4+3
  [fe0851c0] + OpenMPI_jll v5.0.7+2
  [efe28fd5] + OpenSpecFun_jll v0.5.6+0
  [f50d1b31] + Rmath_jll v0.5.1+0
  [477f73a3] + libaec_jll v1.1.3+0
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] + Downloads v1.7.0
  [7b1f6079] + FileWatching v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] + InteractiveUtils v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [37e2e46d] + LinearAlgebra v1.12.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [a63ad114] + Mmap v1.11.0
  [ca575930] + NetworkOptions v1.3.0
  [44cfe95a] + Pkg v1.13.0
  [de0858da] + Printf v1.11.0
  [3fa0cd96] + REPL v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization v1.11.0
  [6462fe0b] + Sockets v1.11.0
  [2f01184e] + SparseArrays v1.12.0
  [f489334b] + StyledStrings v1.11.0
  [4607b0f0] + SuiteSparse
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test v1.11.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] + LibCURL_jll v8.12.1+1
  [e37daf67] + LibGit2_jll v1.9.0+0
  [29816b5a] + LibSSH2_jll v1.11.3+1
  [14a3606d] + MozillaCACerts_jll v2025.5.20
  [4536629a] + OpenBLAS_jll v0.3.29+0
  [05823500] + OpenLibm_jll v0.8.5+0
  [458c3c95] + OpenSSL_jll v3.5.0+0
  [bea87d4a] + SuiteSparse_jll v7.10.1+0
  [83775a58] + Zlib_jll v1.3.1+2
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] + libblastrampoline_jll v5.12.0+0
  [8e850ede] + nghttp2_jll v1.65.0+0
  [3f19e933] + p7zip_jll v17.5.0+2

Installation completed after 16.14s


################################################################################
# Precompilation
#

Precompiling PkgEval dependencies...
Precompiling packages...
   4328.9 ms  ✓ TestEnv
  1 dependency successfully precompiled in 4 seconds. 25 already precompiled.

Precompiling package dependencies...

Precompilation completed after 305.28s


################################################################################
# Testing
#

     Testing OnlinePCA
        Test Could not use exact versions of packages in manifest. Re-resolving dependencies
    Updating `/tmp/jl_KeTqBy/Project.toml`
  [31c24e10] ↑ Distributions v0.25.111 ⇒ v0.25.120
  [1a297f60] ↑ FillArrays v1.12.0 ⇒ v1.13.0
  [975b03d1] + OnlinePCA v0.3.9
  [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1
  [37e2e46d] ~ LinearAlgebra ⇒ v1.12.0
  [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.12.0
  [8dfed614] ~ Test ⇒ v1.11.0
    Updating `/tmp/jl_KeTqBy/Manifest.toml`
  [944b1d66] ↑ CodecZlib v0.7.6 ⇒ v0.7.8
  [6b39b394] + CodecZstd v0.8.6
  [a8cc5b0e] + Crayons v4.1.1
  [a93c6f00] + DataFrames v1.7.0
  [864edb3b] ↑ DataStructures v0.18.20 ⇒ v0.18.22
  [e2d170a0] + DataValueInterfaces v1.0.0
  [31c24e10] ↑ Distributions v0.25.111 ⇒ v0.25.120
  [ffbed154] ↑ DocStringExtensions v0.9.3 ⇒ v0.9.4
  [1a297f60] ↑ FillArrays v1.12.0 ⇒ v1.13.0
  [38e38edf] + GLM v1.9.0
  [f67ccb44] + HDF5 v0.17.2
  [34004b35] ↑ HypergeometricFunctions v0.3.24 ⇒ v0.3.28
  [842dd82b] + InlineStrings v1.4.3
  [41ab1584] + InvertedIndices v1.3.1
  [92d709cd] ↑ IrrationalConstants v0.2.2 ⇒ v0.2.4
  [82899510] + IteratorInterfaceExtensions v1.0.0
  [692b3bcd] ↑ JLLWrappers v1.5.0 ⇒ v1.7.0
  [b964fa9f] + LaTeXStrings v1.4.0
  [2ab3a3ac] ↑ LogExpFunctions v0.3.28 ⇒ v0.3.29
  [3da0fdf6] + MPIPreferences v0.1.11
  [975b03d1] + OnlinePCA v0.3.9
  [bac558e1] ↑ OrderedCollections v1.6.3 ⇒ v1.8.1
  [90014a1f] ↑ PDMats v0.11.31 ⇒ v0.11.35
  [2dfb63ee] + PooledArrays v1.4.3
  [aea7be01] + PrecompileTools v1.3.2
  [08abe8d2] + PrettyTables v2.4.0
  [92933f4c] + ProgressMeter v1.10.4
  [43287f4e] ↑ PtrArrays v1.2.0 ⇒ v1.3.0
  [1fd47b50] ↑ QuadGK v2.10.1 ⇒ v2.11.2
  [ae029012] + Requires v1.3.1
  [79098fc4] ↑ Rmath v0.7.1 ⇒ v0.8.0
  [91c51154] + SentinelArrays v1.4.8
  [1277b4bf] + ShiftedArrays v2.0.0
  [276daf66] ↑ SpecialFunctions v2.4.0 ⇒ v2.5.1
  [10745b16] ↑ Statistics v1.10.0 ⇒ v1.11.1
  [2913bbd2] ↑ StatsBase v0.34.3 ⇒ v0.34.5
  [4c63d2b9] ↑ StatsFuns v1.3.1 ⇒ v1.5.0
  [3eaba693] + StatsModels v0.7.4
  [892a3eda] + StringManipulation v0.4.1
  [3783bdb8] + TableTraits v1.0.1
  [bd369af6] + Tables v1.12.0
  [3bb67fe8] ↑ TranscodingStreams v0.11.2 ⇒ v0.11.3
  [0234f1f7] + HDF5_jll v1.14.6+0
  [e33a78d0] + Hwloc_jll v2.12.1+0
  [7cb0a576] + MPICH_jll v4.3.0+1
  [f1f71cc9] + MPItrampoline_jll v5.5.3+0
  [c8ffd9c3] - MbedTLS_jll v2.28.2+1
  [9237b28f] + MicrosoftMPI_jll v10.1.4+3
  [fe0851c0] + OpenMPI_jll v5.0.7+2
  [efe28fd5] ↑ OpenSpecFun_jll v0.5.5+0 ⇒ v0.5.6+0
  [f50d1b31] ↑ Rmath_jll v0.4.3+0 ⇒ v0.5.1+0
  [477f73a3] + libaec_jll v1.1.3+0
  [0dad84c5] ↑ ArgTools v1.1.1 ⇒ v1.1.2
  [56f22d72] ~ Artifacts ⇒ v1.11.0
  [2a0f44e3] ~ Base64 ⇒ v1.11.0
  [ade2ca70] ~ Dates ⇒ v1.11.0
  [8ba89e20] + Distributed v1.11.0
  [f43a241f] ↑ Downloads v1.6.0 ⇒ v1.7.0
  [7b1f6079] ~ FileWatching ⇒ v1.11.0
  [9fa8497b] + Future v1.11.0
  [b77e0a4c] ~ InteractiveUtils ⇒ v1.11.0
  [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] + LazyArtifacts v1.11.0
  [76f85450] ~ LibGit2 ⇒ v1.11.0
  [8f399da3] ~ Libdl ⇒ v1.11.0
  [37e2e46d] ~ LinearAlgebra ⇒ v1.12.0
  [56ddb016] ~ Logging ⇒ v1.11.0
  [d6f4376e] ~ Markdown ⇒ v1.11.0
  [a63ad114] ~ Mmap ⇒ v1.11.0
  [ca575930] ↑ NetworkOptions v1.2.0 ⇒ v1.3.0
  [44cfe95a] ↑ Pkg v1.10.0 ⇒ v1.13.0
  [de0858da] ~ Printf ⇒ v1.11.0
  [3fa0cd96] ~ REPL ⇒ v1.11.0
  [9a3f8284] ~ Random ⇒ v1.11.0
  [9e88b42a] ~ Serialization ⇒ v1.11.0
  [6462fe0b] ~ Sockets ⇒ v1.11.0
  [2f01184e] ↑ SparseArrays v1.10.0 ⇒ v1.12.0
  [f489334b] + StyledStrings v1.11.0
  [8dfed614] ~ Test ⇒ v1.11.0
  [cf7118a7] ~ UUIDs ⇒ v1.11.0
  [4ec0a83e] ~ Unicode ⇒ v1.11.0
  [e66e0078] ↑ CompilerSupportLibraries_jll v1.1.1+0 ⇒ v1.3.0+1
  [deac9b47] ↑ LibCURL_jll v8.4.0+0 ⇒ v8.12.1+1
  [e37daf67] ↑ LibGit2_jll v1.6.4+0 ⇒ v1.9.0+0
  [29816b5a] ↑ LibSSH2_jll v1.11.0+1 ⇒ v1.11.3+1
  [14a3606d] ↑ MozillaCACerts_jll v2023.1.10 ⇒ v2025.5.20
  [4536629a] ↑ OpenBLAS_jll v0.3.23+4 ⇒ v0.3.29+0
  [05823500] ↑ OpenLibm_jll v0.8.1+2 ⇒ v0.8.5+0
  [458c3c95] + OpenSSL_jll v3.5.0+0
  [bea87d4a] ↑ SuiteSparse_jll v7.2.1+1 ⇒ v7.10.1+0
  [83775a58] ↑ Zlib_jll v1.2.13+1 ⇒ v1.3.1+2
  [3161d3a3] + Zstd_jll v1.5.7+1
  [8e850b90] ↑ libblastrampoline_jll v5.8.0+1 ⇒ v5.12.0+0
  [8e850ede] ↑ nghttp2_jll v1.52.0+1 ⇒ v1.65.0+0
  [3f19e933] ↑ p7zip_jll v17.4.0+2 ⇒ v17.5.0+2
        Test Successfully re-resolved
      Status `/tmp/jl_KeTqBy/Project.toml`
  [c7e460c6] ArgParse v1.2.0
  [8bb1440f] DelimitedFiles v1.9.1
  [31c24e10] Distributions v0.25.120
  [1a297f60] FillArrays v1.13.0
  [4d4711f2] MatrixMarket v0.5.2
  [975b03d1] OnlinePCA v0.3.9
  [10745b16] Statistics v1.11.1
  [37e2e46d] LinearAlgebra v1.12.0
  [2f01184e] SparseArrays v1.12.0
  [8dfed614] Test v1.11.0
      Status `/tmp/jl_KeTqBy/Manifest.toml`
  [66dad0bd] AliasTables v1.1.3
  [c7e460c6] ArgParse v1.2.0
  [944b1d66] CodecZlib v0.7.8
  [6b39b394] CodecZstd v0.8.6
  [34da2185] Compat v4.16.0
  [a8cc5b0e] Crayons v4.1.1
  [9a962f9c] DataAPI v1.16.0
  [a93c6f00] DataFrames v1.7.0
  [864edb3b] DataStructures v0.18.22
  [e2d170a0] DataValueInterfaces v1.0.0
  [8bb1440f] DelimitedFiles v1.9.1
  [31c24e10] Distributions v0.25.120
  [ffbed154] DocStringExtensions v0.9.4
  [1a297f60] FillArrays v1.13.0
  [38e38edf] GLM v1.9.0
  [f67ccb44] HDF5 v0.17.2
  [34004b35] HypergeometricFunctions v0.3.28
  [842dd82b] InlineStrings v1.4.3
  [41ab1584] InvertedIndices v1.3.1
  [92d709cd] IrrationalConstants v0.2.4
  [82899510] IteratorInterfaceExtensions v1.0.0
  [692b3bcd] JLLWrappers v1.7.0
  [b964fa9f] LaTeXStrings v1.4.0
  [2ab3a3ac] LogExpFunctions v0.3.29
  [3da0fdf6] MPIPreferences v0.1.11
  [4d4711f2] MatrixMarket v0.5.2
  [e1d29d7a] Missings v1.2.0
  [975b03d1] OnlinePCA v0.3.9
  [bac558e1] OrderedCollections v1.8.1
  [90014a1f] PDMats v0.11.35
  [2dfb63ee] PooledArrays v1.4.3
  [aea7be01] PrecompileTools v1.3.2
  [21216c6a] Preferences v1.4.3
  [08abe8d2] PrettyTables v2.4.0
  [92933f4c] ProgressMeter v1.10.4
  [43287f4e] PtrArrays v1.3.0
  [1fd47b50] QuadGK v2.11.2
  [189a3867] Reexport v1.2.2
  [ae029012] Requires v1.3.1
  [79098fc4] Rmath v0.8.0
  [91c51154] SentinelArrays v1.4.8
  [1277b4bf] ShiftedArrays v2.0.0
  [a2af1166] SortingAlgorithms v1.2.1
  [276daf66] SpecialFunctions v2.5.1
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.0
  [2913bbd2] StatsBase v0.34.5
  [4c63d2b9] StatsFuns v1.5.0
  [3eaba693] StatsModels v0.7.4
  [892a3eda] StringManipulation v0.4.1
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.0
  [b718987f] TextWrap v1.0.2
  [3bb67fe8] TranscodingStreams v0.11.3
  [0234f1f7] HDF5_jll v1.14.6+0
  [e33a78d0] Hwloc_jll v2.12.1+0
  [7cb0a576] MPICH_jll v4.3.0+1
  [f1f71cc9] MPItrampoline_jll v5.5.3+0
  [9237b28f] MicrosoftMPI_jll v10.1.4+3
  [fe0851c0] OpenMPI_jll v5.0.7+2
  [efe28fd5] OpenSpecFun_jll v0.5.6+0
  [f50d1b31] Rmath_jll v0.5.1+0
  [477f73a3] libaec_jll v1.1.3+0
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.7.0
  [7b1f6079] FileWatching v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.12.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.3.0
  [44cfe95a] Pkg v1.13.0
  [de0858da] Printf v1.11.0
  [3fa0cd96] REPL v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.12.0
  [f489334b] StyledStrings v1.11.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.3.0+1
  [deac9b47] LibCURL_jll v8.12.1+1
  [e37daf67] LibGit2_jll v1.9.0+0
  [29816b5a] LibSSH2_jll v1.11.3+1
  [14a3606d] MozillaCACerts_jll v2025.5.20
  [4536629a] OpenBLAS_jll v0.3.29+0
  [05823500] OpenLibm_jll v0.8.5+0
  [458c3c95] OpenSSL_jll v3.5.0+0
  [bea87d4a] SuiteSparse_jll v7.10.1+0
  [83775a58] Zlib_jll v1.3.1+2
  [3161d3a3] Zstd_jll v1.5.7+1
  [8e850b90] libblastrampoline_jll v5.12.0+0
  [8e850ede] nghttp2_jll v1.65.0+0
  [3f19e933] p7zip_jll v17.5.0+2
     Testing Running tests...
/tmp/jl_H9xyzW
Running all tests...
####### Binarization of CSV (Julia API) #######

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####### Binarization of CSV (Command line) #######
Precompiling packages...
   1131.1 ms  ✓ ShiftedArrays
    903.0 ms  ✓ TextWrap
   1241.1 ms  ✓ TranscodingStreams
    864.2 ms  ✓ PtrArrays
   1327.9 ms  ✓ OrderedCollections
    801.7 ms  ✓ IteratorInterfaceExtensions
   4402.7 ms  ✓ Crayons
   1146.3 ms  ✓ Statistics
    837.7 ms  ✓ Reexport
   1331.6 ms  ✓ DocStringExtensions
   1944.8 ms  ✓ FillArrays
    812.4 ms  ✓ DataValueInterfaces
    876.7 ms  ✓ DataAPI
   3869.1 ms  ✓ IrrationalConstants
   1612.8 ms  ✓ InlineStrings
    867.0 ms  ✓ LaTeXStrings
   1235.7 ms  ✓ SuiteSparse
    924.2 ms  ✓ InvertedIndices
    856.8 ms  ✓ StatsAPI
   1003.3 ms  ✓ DelimitedFiles
   1993.2 ms  ✓ Requires
   1867.3 ms  ✓ ProgressMeter
   5951.2 ms  ✓ SentinelArrays
   3946.0 ms  ✓ Preferences
   1172.4 ms  ✓ Compat
   2064.5 ms  ✓ ArgParse
   1014.7 ms  ✓ CodecZlib
   2177.3 ms  ✓ CodecZstd
   1001.0 ms  ✓ AliasTables
    783.2 ms  ✓ TableTraits
   1266.9 ms  ✓ Statistics → SparseArraysExt
   1424.3 ms  ✓ FillArrays → FillArraysSparseArraysExt
    929.6 ms  ✓ FillArrays → FillArraysStatisticsExt
   1056.6 ms  ✓ PooledArrays
   1022.5 ms  ✓ Missings
   1357.7 ms  ✓ LogExpFunctions
   1799.0 ms  ✓ PDMats
   1606.1 ms  ✓ MPIPreferences
   1132.4 ms  ✓ JLLWrappers
    967.1 ms  ✓ PrecompileTools
    922.7 ms  ✓ Compat → CompatLinearAlgebraExt
   1336.6 ms  ✓ MatrixMarket
   1706.3 ms  ✓ Tables
   1338.9 ms  ✓ FillArrays → FillArraysPDMatsExt
   5224.4 ms  ✓ MPItrampoline_jll
   1184.8 ms  ✓ MicrosoftMPI_jll
   1474.2 ms  ✓ OpenSpecFun_jll
   1585.7 ms  ✓ libaec_jll
   1375.2 ms  ✓ Rmath_jll
   1470.3 ms  ✓ Hwloc_jll
   6025.9 ms  ✓ StringManipulation
   4367.4 ms  ✓ DataStructures
   5967.0 ms  ✓ SpecialFunctions
   1615.1 ms  ✓ Rmath
   5106.2 ms  ✓ OpenMPI_jll
   5692.5 ms  ✓ MPICH_jll
  72717.3 ms  ✓ PrettyTables
   3132.7 ms  ✓ QuadGK
   2212.6 ms  ✓ SortingAlgorithms
   2138.6 ms  ✓ HypergeometricFunctions
   7708.0 ms  ✓ HDF5_jll
   4575.8 ms  ✓ StatsBase
 198464.0 ms  ✓ DataFrames
   4279.4 ms  ✓ StatsFuns
  23675.6 ms  ✓ HDF5
   4704.0 ms  ✓ StatsModels
   9735.4 ms  ✓ Distributions
   3441.2 ms  ✓ Distributions → DistributionsTestExt
   5073.7 ms  ✓ GLM
  17831.3 ms  ✓ OnlinePCA
  70 dependencies successfully precompiled in 469 seconds. 38 already precompiled.
Parsed args:
  csvfile  =>  /tmp/jl_H9xyzW/Data.csv
  binfile  =>  /tmp/jl_H9xyzW/Data.zst

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####### Binarization of MM (Julia API) #######
####### Binarization of MM (Command line) #######
Parsed args:
  binfile  =>  /tmp/jl_H9xyzW/Data.mtx.zst
  mmfile  =>  /tmp/jl_H9xyzW/Data.mtx
####### Binarization of Binary COO (Julia API) #######
####### Binarization of Binary COO (Command line) #######
Parsed args:
  binfile  =>  /tmp/jl_H9xyzW/Data.bincoo.zst
  bincoofile  =>  /tmp/jl_H9xyzW/Data.bincoo
####### Summarization (Julia API) #######
1 / 2 : Column-wise statistics are calculated...
2 / 2 : Row-wise statistics are calculated...
####### Summarization (Command line) #######
Parsed args:
  outdir  =>  /tmp/jl_M9lsNq
  binfile  =>  /tmp/jl_H9xyzW/Data.zst
  pseudocount  =>  1.0
  mode  =>  dense
1 / 2 : Column-wise statistics are calculated...
2 / 2 : Row-wise statistics are calculated...
####### Summarization (Julia API) #######
1 / 2 : Column-wise statistics are calculated...
2 / 2 : Row-wise statistics are calculated...
####### Summarization (Command line) #######
Parsed args:
  outdir  =>  /tmp/jl_lL3NXL
  binfile  =>  /tmp/jl_H9xyzW/Data.mtx.zst
  pseudocount  =>  1.0
  mode  =>  sparse_mm
1 / 2 : Column-wise statistics are calculated...
2 / 2 : Row-wise statistics are calculated...
####### HVG (Julia API) #######
Highly Variable Genes are calculated...
####### HVG (Command line) #######
Parsed args:
  rowcv2list  =>  /tmp/jl_M9lsNq/Feature_CV2s.csv
  outdir  =>  /tmp/jl_M9lsNq
  binfile  =>  /tmp/jl_H9xyzW/Data.zst
  rowvarlist  =>  /tmp/jl_M9lsNq/Feature_Vars.csv
  rowmeanlist  =>  /tmp/jl_M9lsNq/Feature_Means.csv
Highly Variable Genes are calculated...
####### Filtering (Julia API) #######



####### Filtering (Command line) #######
Parsed args:
  input  =>  /tmp/jl_H9xyzW/Data.zst
  direct1  =>  +
  outdir  =>  /tmp/jl_M9lsNq
  direct2  =>  +
  thr2  =>  10
  samplelist  =>  /tmp/jl_M9lsNq/Sample_NoCounts.csv
  featurelist  =>  /tmp/jl_M9lsNq/Feature_Means.csv
  thr1  =>  10

Parsed args:
  input  =>  /tmp/jl_H9xyzW/Data.zst
  direct1  =>  +
  outdir  =>  /tmp/jl_M9lsNq
  direct2  =>  +
  thr2  =>  10
  samplelist  =>  
  featurelist  =>  /tmp/jl_M9lsNq/Feature_Means.csv
  thr1  =>  10

Parsed args:
  input  =>  /tmp/jl_H9xyzW/Data.zst
  direct1  =>  +
  outdir  =>  /tmp/jl_M9lsNq
  direct2  =>  +
  thr2  =>  10
  samplelist  =>  /tmp/jl_M9lsNq/Sample_NoCounts.csv
  featurelist  =>  
  thr1  =>  10

####### GD (Julia API) #######
####### GD (Command line) #######
Parsed args:
  scheduling  =>  "robbins-monro"
  rowmeanlist  =>  "/tmp/jl_M9lsNq/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_M9lsNq"
  input  =>  "/tmp/jl_H9xyzW/Data.zst"
  outdir  =>  "/tmp/jl_M9lsNq"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6
Parsed args:
  scheduling  =>  "momentum"
  rowmeanlist  =>  "/tmp/jl_M9lsNq/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_M9lsNq"
  input  =>  "/tmp/jl_H9xyzW/Data.zst"
  outdir  =>  "/tmp/jl_M9lsNq"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  "/tmp/jl_M9lsNq/Eigen_vectors.csv"
  lower  =>  0
  offsetStoch  =>  1.0f-6
Parsed args:
  scheduling  =>  "nag"
  rowmeanlist  =>  "/tmp/jl_M9lsNq/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_M9lsNq"
  input  =>  "/tmp/jl_H9xyzW/Data.zst"
  outdir  =>  "/tmp/jl_M9lsNq"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  evalfreq  =>  5000
  initV  =>  "/tmp/jl_M9lsNq/Loadings.csv"
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6
Parsed args:
  scheduling  =>  "adagrad"
  rowmeanlist  =>  "/tmp/jl_M9lsNq/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_M9lsNq"
  input  =>  "/tmp/jl_H9xyzW/Data.zst"
  outdir  =>  "/tmp/jl_M9lsNq"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6
####### Oja (Julia API) #######

Progress:   1%|▎                                        |  ETA: 0:02:46
Progress:   1%|▍                                        |  ETA: 0:03:11
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01

Progress:   1%|▎                                        |  ETA: 0:02:42
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01

Progress:   1%|▎                                        |  ETA: 0:02:52
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01

Progress:   1%|▎                                        |  ETA: 0:03:41
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01
####### Oja (Command line) #######
Parsed args:
  scheduling  =>  "robbins-monro"
  rowmeanlist  =>  "/tmp/jl_M9lsNq/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_M9lsNq"
  input  =>  "/tmp/jl_H9xyzW/Data.zst"
  outdir  =>  "/tmp/jl_M9lsNq"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:06:05
Progress: 100%|█████████████████████████████████████████| Time: 0:00:02
Parsed args:
  scheduling  =>  "momentum"
  rowmeanlist  =>  "/tmp/jl_M9lsNq/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_M9lsNq"
  input  =>  "/tmp/jl_H9xyzW/Data.zst"
  outdir  =>  "/tmp/jl_M9lsNq"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:06:53
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03
Parsed args:
  scheduling  =>  "nag"
  rowmeanlist  =>  "/tmp/jl_M9lsNq/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_M9lsNq"
  input  =>  "/tmp/jl_H9xyzW/Data.zst"
  outdir  =>  "/tmp/jl_M9lsNq"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:09:20
Progress: 100%|█████████████████████████████████████████| Time: 0:00:04
Parsed args:
  scheduling  =>  "adagrad"
  rowmeanlist  =>  "/tmp/jl_M9lsNq/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_M9lsNq"
  input  =>  "/tmp/jl_H9xyzW/Data.zst"
  outdir  =>  "/tmp/jl_M9lsNq"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:08:26
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03
####### SGD (Julia API) #######

Progress:   1%|▎                                        |  ETA: 0:03:00
Progress:   1%|▍                                        |  ETA: 0:03:52
Progress: 100%|█████████████████████████████████████████| Time: 0:00:02

Progress:   1%|▎                                        |  ETA: 0:04:10
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01

Progress:   1%|▎                                        |  ETA: 0:04:28
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01

Progress:   1%|▎                                        |  ETA: 0:04:27
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01
####### SGD (Command line) #######
Parsed args:
  scheduling  =>  "robbins-monro"
  rowmeanlist  =>  "/tmp/jl_M9lsNq/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_M9lsNq"
  input  =>  "/tmp/jl_H9xyzW/Data.zst"
  outdir  =>  "/tmp/jl_M9lsNq"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:05:49
Progress:   1%|▍                                        |  ETA: 0:04:53
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03
Parsed args:
  scheduling  =>  "momentum"
  rowmeanlist  =>  "/tmp/jl_M9lsNq/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_M9lsNq"
  input  =>  "/tmp/jl_H9xyzW/Data.zst"
  outdir  =>  "/tmp/jl_M9lsNq"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:07:02
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03
Parsed args:
  scheduling  =>  "nag"
  rowmeanlist  =>  "/tmp/jl_M9lsNq/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_M9lsNq"
  input  =>  "/tmp/jl_H9xyzW/Data.zst"
  outdir  =>  "/tmp/jl_M9lsNq"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:09:03
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03
Parsed args:
  scheduling  =>  "adagrad"
  rowmeanlist  =>  "/tmp/jl_M9lsNq/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_M9lsNq"
  input  =>  "/tmp/jl_H9xyzW/Data.zst"
  outdir  =>  "/tmp/jl_M9lsNq"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:08:31
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03
####### CCIPCA (Julia API) #######

Progress:   1%|▎                                        |  ETA: 0:01:57
Progress:   1%|▍                                        |  ETA: 0:02:29
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01
####### CCIPCA (Command line) #######
Parsed args:
  rowmeanlist  =>  "/tmp/jl_M9lsNq/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_M9lsNq"
  input  =>  "/tmp/jl_H9xyzW/Data.zst"
  outdir  =>  "/tmp/jl_M9lsNq"
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-15

Progress:   1%|▎                                        |  ETA: 0:08:39
Progress:   1%|▍                                        |  ETA: 0:07:06
Progress: 100%|█████████████████████████████████████████| Time: 0:00:04
####### RSGD (Julia API) #######

Progress:   1%|▎                                        |  ETA: 0:15:09
Progress:   1%|▍                                        |  ETA: 0:11:52
Progress: 100%|█████████████████████████████████████████| Time: 0:00:07

Progress:   1%|▎                                        |  ETA: 0:04:07
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01

Progress:   1%|▎                                        |  ETA: 0:05:23
Progress: 100%|█████████████████████████████████████████| Time: 0:00:02

Progress:   1%|▎                                        |  ETA: 0:04:08
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01
####### RSGD (Command line) #######
Parsed args:
  scheduling  =>  "robbins-monro"
  rowmeanlist  =>  "/tmp/jl_M9lsNq/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_M9lsNq"
  input  =>  "/tmp/jl_H9xyzW/Data.zst"
  outdir  =>  "/tmp/jl_M9lsNq"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:12:39
Progress:   1%|▌                                        |  ETA: 0:07:23
Progress: 100%|█████████████████████████████████████████| Time: 0:00:05
Parsed args:
  scheduling  =>  "momentum"
  rowmeanlist  =>  "/tmp/jl_M9lsNq/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_M9lsNq"
  input  =>  "/tmp/jl_H9xyzW/Data.zst"
  outdir  =>  "/tmp/jl_M9lsNq"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:13:58
Progress: 100%|█████████████████████████████████████████| Time: 0:00:05
Parsed args:
  scheduling  =>  "nag"
  rowmeanlist  =>  "/tmp/jl_M9lsNq/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_M9lsNq"
  input  =>  "/tmp/jl_H9xyzW/Data.zst"
  outdir  =>  "/tmp/jl_M9lsNq"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:14:38
Progress: 100%|█████████████████████████████████████████| Time: 0:00:06
Parsed args:
  scheduling  =>  "adagrad"
  rowmeanlist  =>  "/tmp/jl_M9lsNq/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_M9lsNq"
  input  =>  "/tmp/jl_H9xyzW/Data.zst"
  outdir  =>  "/tmp/jl_M9lsNq"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:15:18
Progress: 100%|█████████████████████████████████████████| Time: 0:00:06
####### SVRG (Julia API) #######

Progress:   1%|▎                                        |  ETA: 0:04:44
Progress:   1%|▍                                        |  ETA: 0:05:35
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03

Progress:   1%|▎                                        |  ETA: 0:05:23
Progress: 100%|█████████████████████████████████████████| Time: 0:00:02

Progress:   1%|▎                                        |  ETA: 0:09:01
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03

Progress:   1%|▎                                        |  ETA: 0:07:41
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03
####### SVRG (Command line) #######
Parsed args:
  scheduling  =>  "robbins-monro"
  rowmeanlist  =>  "/tmp/jl_M9lsNq/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_M9lsNq"
  input  =>  "/tmp/jl_H9xyzW/Data.zst"
  outdir  =>  "/tmp/jl_M9lsNq"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:15:14
Progress:   1%|▍                                        |  ETA: 0:12:02
Progress: 100%|█████████████████████████████████████████| Time: 0:00:07
Parsed args:
  scheduling  =>  "momentum"
  rowmeanlist  =>  "/tmp/jl_M9lsNq/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_M9lsNq"
  input  =>  "/tmp/jl_H9xyzW/Data.zst"
  outdir  =>  "/tmp/jl_M9lsNq"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:16:31
Progress: 100%|█████████████████████████████████████████| Time: 0:00:06
Parsed args:
  scheduling  =>  "nag"
  rowmeanlist  =>  "/tmp/jl_M9lsNq/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_M9lsNq"
  input  =>  "/tmp/jl_H9xyzW/Data.zst"
  outdir  =>  "/tmp/jl_M9lsNq"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:18:15
Progress: 100%|█████████████████████████████████████████| Time: 0:00:07
Parsed args:
  scheduling  =>  "adagrad"
  rowmeanlist  =>  "/tmp/jl_M9lsNq/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_M9lsNq"
  input  =>  "/tmp/jl_H9xyzW/Data.zst"
  outdir  =>  "/tmp/jl_M9lsNq"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:17:40
Progress: 100%|█████████████████████████████████████████| Time: 0:00:07
####### RSVRG (Julia API) #######

Progress:   1%|▎                                        |  ETA: 0:04:36
Progress:   1%|▍                                        |  ETA: 0:05:31
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03

Progress:   1%|▎                                        |  ETA: 0:06:06
Progress: 100%|█████████████████████████████████████████| Time: 0:00:02

Progress:   1%|▎                                        |  ETA: 0:08:40
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03

Progress:   1%|▎                                        |  ETA: 0:06:45
Progress: 100%|█████████████████████████████████████████| Time: 0:00:02
####### RSVRG (Command line) #######
Parsed args:
  scheduling  =>  "robbins-monro"
  rowmeanlist  =>  "/tmp/jl_M9lsNq/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_M9lsNq"
  input  =>  "/tmp/jl_H9xyzW/Data.zst"
  outdir  =>  "/tmp/jl_M9lsNq"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:20:56
Progress:   1%|▍                                        |  ETA: 0:15:52
Progress: 100%|█████████████████████████████████████████| Time: 0:00:09
Parsed args:
  scheduling  =>  "momentum"
  rowmeanlist  =>  "/tmp/jl_M9lsNq/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_M9lsNq"
  input  =>  "/tmp/jl_H9xyzW/Data.zst"
  outdir  =>  "/tmp/jl_M9lsNq"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:17:51
Progress: 100%|█████████████████████████████████████████| Time: 0:00:07
Parsed args:
  scheduling  =>  "nag"
  rowmeanlist  =>  "/tmp/jl_M9lsNq/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_M9lsNq"
  input  =>  "/tmp/jl_H9xyzW/Data.zst"
  outdir  =>  "/tmp/jl_M9lsNq"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:23:27
Progress: 100%|█████████████████████████████████████████| Time: 0:00:09
Parsed args:
  scheduling  =>  "adagrad"
  rowmeanlist  =>  "/tmp/jl_M9lsNq/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_M9lsNq"
  input  =>  "/tmp/jl_H9xyzW/Data.zst"
  outdir  =>  "/tmp/jl_M9lsNq"
  epsilon  =>  1.0f-8
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  offsetFull  =>  1.0f-20
  colsumlist  =>  ""
  stepsize  =>  "1.0e-15"
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  g  =>  0.9f0
  numepoch  =>  "1"
  expvar  =>  0.1f0
  perm  =>  false
  numbatch  =>  100
  evalfreq  =>  5000
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0
  offsetStoch  =>  1.0f-6

Progress:   1%|▎                                        |  ETA: 0:23:46
Progress: 100%|█████████████████████████████████████████| Time: 0:00:09
####### Orthogonal Iteration (Julia API) #######

Progress:   0%|▏                                        |  ETA: 0:06:34
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01
####### Orthogonal Iteration (Command line) #######
Parsed args:
  rowmeanlist  =>  "/tmp/jl_M9lsNq/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_M9lsNq"
  input  =>  "/tmp/jl_H9xyzW/Data.zst"
  outdir  =>  "/tmp/jl_M9lsNq"
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  colsumlist  =>  ""
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  numepoch  =>  "3"
  expvar  =>  0.1f0
  perm  =>  false
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0

Progress:   0%|▏                                        |  ETA: 0:17:51
Progress:  33%|█████████████▊                           |  ETA: 0:00:08
Progress: 100%|█████████████████████████████████████████| Time: 0:00:04
####### Randomized Block Krylov Iteration (Julia API) #######

Progress:  33%|█████████████▊                           |  ETA: 0:00:00
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
Q' A
Q' A' A
svd(Q' A' A)
Q*U
####### Randomized Block Krylov Iteration (Command line) #######
Parsed args:
  rowmeanlist  =>  "/tmp/jl_M9lsNq/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_M9lsNq"
  input  =>  "/tmp/jl_H9xyzW/Data.zst"
  outdir  =>  "/tmp/jl_M9lsNq"
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  colsumlist  =>  ""
  upper  =>  1.0f38
  cper  =>  1.0f0
  scale  =>  "ftt"
  numepoch  =>  "3"
  expvar  =>  0.1f0
  perm  =>  false
  initV  =>  nothing
  initW  =>  nothing
  lower  =>  0

Progress:   0%|▏                                        |  ETA: 0:22:20
Progress:  33%|█████████████▊                           |  ETA: 0:00:09
Progress: 100%|█████████████████████████████████████████| Time: 0:00:05
Q' A
Q' A' A
svd(Q' A' A)
Q*U
####### ARNOLDI (Julia API) #######

Progress:  20%|████████▎                                |  ETA: 0:00:01
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
####### ARNOLDI (Command line) #######
Parsed args:
  rowmeanlist  =>  "/tmp/jl_M9lsNq/Feature_FTTMeans.csv"
  dim  =>  "3"
  input  =>  "/tmp/jl_H9xyzW/Data.zst"
  outdir  =>  "/tmp/jl_M9lsNq"
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  colsumlist  =>  ""
  cper  =>  1.0f0
  scale  =>  "ftt"
  numepoch  =>  "3"
  expvar  =>  0.1f0
  perm  =>  false

Progress:  67%|███████████████████████████▍             |  ETA: 0:00:01
Progress: 100%|█████████████████████████████████████████| Time: 0:00:02
####### LANCZOS (Julia API) #######
####### LANCZOS (Command line) #######
Parsed args:
  rowmeanlist  =>  "/tmp/jl_M9lsNq/Feature_FTTMeans.csv"
  dim  =>  "3"
  input  =>  "/tmp/jl_H9xyzW/Data.zst"
  outdir  =>  "/tmp/jl_M9lsNq"
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  colsumlist  =>  ""
  cper  =>  1.0f0
  scale  =>  "ftt"
  numepoch  =>  "3"
  expvar  =>  0.1f0
  perm  =>  false

Progress:  67%|███████████████████████████▍             |  ETA: 0:00:01
Progress: 100%|█████████████████████████████████████████| Time: 0:00:02
####### HALKO (Julia API) #######
Random Projection : Y = A Ω

Progress:   1%|▎                                        |  ETA: 0:00:48
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
QR factorization : Q = qr(Y)
Subspace iterations (1/2) : qr(A' Q)

Progress:  43%|█████████████████▌                       |  ETA: 0:00:00
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
qr(A' Q)
Subspace iterations (2/2) : Y = qr(A qr(A' Q))
Q = qr(Y)
Subspace iterations (1/2) : qr(A' Q)
qr(A' Q)
Subspace iterations (2/2) : Y = qr(A qr(A' Q))
Q = qr(Y)
Subspace iterations (1/2) : qr(A' Q)
qr(A' Q)
Subspace iterations (2/2) : Y = qr(A qr(A' Q))
Q = qr(Y)
Calculation of small matrix : B = Q' A
SVD with small matrix : svd(B)
####### HALKO (Command line) #######
Parsed args:
  rowmeanlist  =>  "/tmp/jl_M9lsNq/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_M9lsNq"
  input  =>  "/tmp/jl_H9xyzW/Data.zst"
  outdir  =>  "/tmp/jl_M9lsNq"
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  colsumlist  =>  ""
  noversamples  =>  5
  cper  =>  1.0f0
  niter  =>  3
  scale  =>  "ftt"
  perm  =>  false
  initV  =>  nothing
  initW  =>  nothing
Random Projection : Y = A Ω

Progress:   1%|▎                                        |  ETA: 0:04:47
Progress: 100%|█████████████████████████████████████████| Time: 0:00:02
QR factorization : Q = qr(Y)
Subspace iterations (1/2) : qr(A' Q)

Progress:   1%|▎                                        |  ETA: 0:01:26
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
qr(A' Q)
Subspace iterations (2/2) : Y = qr(A qr(A' Q))
Q = qr(Y)
Subspace iterations (1/2) : qr(A' Q)
qr(A' Q)
Subspace iterations (2/2) : Y = qr(A qr(A' Q))
Q = qr(Y)
Subspace iterations (1/2) : qr(A' Q)
qr(A' Q)
Subspace iterations (2/2) : Y = qr(A qr(A' Q))
Q = qr(Y)
Calculation of small matrix : B = Q' A
SVD with small matrix : svd(B)
####### ALGORITHM971 (Julia API) #######
Random Projection : Y = A Ω
LU factorization : L = lu(Y)
Normalized power iterations (1/3) : A' L
L = lu(A' L)
Normalized power iterations (2/3) : Y = A lu(A' L)
Normalized power iterations (3/3) : L = lu(A lu(A' L))
Normalized power iterations (1/3) : A' L
L = lu(A' L)
Normalized power iterations (2/3) : Y = A lu(A' L)
Normalized power iterations (3/3) : L = lu(A lu(A' L))
Normalized power iterations (1/3) : A' L
L = lu(A' L)
Normalized power iterations (2/3) : Y = A lu(A' L)
QR factorization  (3/3) : Q = qr(A lu(A' L))
Calculation of small matrix : B = Q' A
SVD with small matrix : svd(B)
####### ALGORITHM971 (Command line) #######
Parsed args:
  rowmeanlist  =>  "/tmp/jl_M9lsNq/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_M9lsNq"
  input  =>  "/tmp/jl_H9xyzW/Data.zst"
  outdir  =>  "/tmp/jl_M9lsNq"
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  colsumlist  =>  ""
  noversamples  =>  5
  cper  =>  1.0f0
  niter  =>  3
  scale  =>  "ftt"
  perm  =>  false
  initV  =>  nothing
  initW  =>  nothing
Random Projection : Y = A Ω

Progress:   1%|▎                                        |  ETA: 0:05:51
Progress: 100%|█████████████████████████████████████████| Time: 0:00:02
LU factorization : L = lu(Y)
Normalized power iterations (1/3) : A' L

Progress:   1%|▎                                        |  ETA: 0:01:36
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
L = lu(A' L)
Normalized power iterations (2/3) : Y = A lu(A' L)
Normalized power iterations (3/3) : L = lu(A lu(A' L))
Normalized power iterations (1/3) : A' L
L = lu(A' L)
Normalized power iterations (2/3) : Y = A lu(A' L)
Normalized power iterations (3/3) : L = lu(A lu(A' L))
Normalized power iterations (1/3) : A' L
L = lu(A' L)
Normalized power iterations (2/3) : Y = A lu(A' L)
QR factorization  (3/3) : Q = qr(A lu(A' L))
Calculation of small matrix : B = Q' A
SVD with small matrix : svd(B)
####### SINGLEPASS (Julia API) #######
Random Projection : Y = A Ω, Ytilde = A' Ωtilde
QR factorization : Q = qr(Y), Qtilde = qr(Ytilde)
Solve linear equation : Ωtilde' Q B = Ytilde' Qtilde for B
SVD with small matrix : svd(B)
####### SINGLEPASS (Command line) #######
Parsed args:
  rowmeanlist  =>  "/tmp/jl_M9lsNq/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_M9lsNq"
  input  =>  "/tmp/jl_H9xyzW/Data.zst"
  outdir  =>  "/tmp/jl_M9lsNq"
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  colsumlist  =>  ""
  noversamples  =>  5
  cper  =>  1.0f0
  niter  =>  3
  scale  =>  "ftt"
  perm  =>  false
  initV  =>  nothing
  initW  =>  nothing
Random Projection : Y = A Ω, Ytilde = A' Ωtilde

Progress:   1%|▎                                        |  ETA: 0:02:25
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01
QR factorization : Q = qr(Y), Qtilde = qr(Ytilde)
Solve linear equation : Ωtilde' Q B = Ytilde' Qtilde for B
SVD with small matrix : svd(B)
####### SINGLEPASS2 (Julia API) #######
Random Projection : G = A Ω, H = A' A Ω
Subspace iterations (1/2) : Q = qr(Yi)
Subspace iterations (2/2) : Q = qr(Qi - Q(Q' Qi))
Subspace iterations (1/2) : Q = qr(Yi)
Subspace iterations (2/2) : Q = qr(Qi - Q(Q' Qi))
Subspace iterations (1/2) : Q = qr(Yi)
Subspace iterations (2/2) : Q = qr(Qi - Q(Q' Qi))
SVD with small matrix : svd(B)
####### SINGLEPASS2 (Command line) #######
Parsed args:
  rowmeanlist  =>  "/tmp/jl_M9lsNq/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_M9lsNq"
  input  =>  "/tmp/jl_H9xyzW/Data.zst"
  outdir  =>  "/tmp/jl_M9lsNq"
  pseudocount  =>  1.0f0
  rowvarlist  =>  ""
  colsumlist  =>  ""
  noversamples  =>  5
  cper  =>  1.0f0
  niter  =>  3
  scale  =>  "ftt"
  perm  =>  false
  initV  =>  nothing
  initW  =>  nothing
Random Projection : G = A Ω, H = A' A Ω

Progress:   1%|▎                                        |  ETA: 0:02:17
Progress: 100%|█████████████████████████████████████████| Time: 0:00:01
Subspace iterations (1/2) : Q = qr(Yi)
Subspace iterations (2/2) : Q = qr(Qi - Q(Q' Qi))
Subspace iterations (1/2) : Q = qr(Yi)
Subspace iterations (2/2) : Q = qr(Qi - Q(Q' Qi))
Subspace iterations (1/2) : Q = qr(Yi)
Subspace iterations (2/2) : Q = qr(Qi - Q(Q' Qi))
SVD with small matrix : svd(B)
####### Sparse Randomized SVD (Julia API) #######
Initial Setting...

Progress:  40%|████████████████▍                        |  ETA: 0:00:08
Progress: 100%|█████████████████████████████████████████| Time: 0:00:05
Random Projection : Y = A Ω

Progress:  40%|████████████████▍                        |  ETA: 0:00:01
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
LU factorization : L = lu(Y)
##### Iteration 1 / 3 #####
Normalized power iterations (1/3) : A' L

Progress:  40%|████████████████▍                        |  ETA: 0:00:01
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
Normalized power iterations (2/3) : A A' L
LU decomposition (3/3) : L = lu(A A' L)
##### Iteration 2 / 3 #####
Normalized power iterations (1/3) : A' L
Normalized power iterations (2/3) : A A' L
LU decomposition (3/3) : L = lu(A A' L)
##### Iteration 3 / 3 #####
Normalized power iterations (1/3) : A' L
Normalized power iterations (2/3) : A A' L
QR decomposition  (3/3) : Q = qr(A A' L)
Small matrix computation : B = Q' A

Progress:  40%|████████████████▍                        |  ETA: 0:00:01
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
SVD : B = U Σ V'
####### Sparse Randomized SVD (Command line) #######
Parsed args:
  rowmeanlist  =>  "/tmp/jl_lL3NXL/Feature_FTTMeans.csv"
  dim  =>  "3"
  logdir  =>  "/tmp/jl_lL3NXL"
  input  =>  "/tmp/jl_H9xyzW/Data.mtx.zst"
  outdir  =>  "/tmp/jl_lL3NXL"
  rowvarlist  =>  ""
  colsumlist  =>  ""
  noversamples  =>  5
  cper  =>  1.0f0
  niter  =>  3
  scale  =>  "ftt"
  chunksize  =>  "51"
  perm  =>  false
  initV  =>  nothing
  initW  =>  nothing
Initial Setting...

Progress:  40%|████████████████▍                        |  ETA: 0:00:05
Progress: 100%|█████████████████████████████████████████| Time: 0:00:03
Random Projection : Y = A Ω

Progress:  40%|████████████████▍                        |  ETA: 0:00:00
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
LU factorization : L = lu(Y)
##### Iteration 1 / 3 #####
Normalized power iterations (1/3) : A' L

Progress:  40%|████████████████▍                        |  ETA: 0:00:01
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
Normalized power iterations (2/3) : A A' L
LU decomposition (3/3) : L = lu(A A' L)
##### Iteration 2 / 3 #####
Normalized power iterations (1/3) : A' L
Normalized power iterations (2/3) : A A' L
LU decomposition (3/3) : L = lu(A A' L)
##### Iteration 3 / 3 #####
Normalized power iterations (1/3) : A' L
Normalized power iterations (2/3) : A A' L
QR decomposition  (3/3) : Q = qr(A A' L)
Small matrix computation : B = Q' A

Progress:  40%|████████████████▍                        |  ETA: 0:00:01
Progress: 100%|█████████████████████████████████████████| Time: 0:00:00
SVD : B = U Σ V'
####### Exact Out-of-Core PCA (Dense, Julia API) #######
# 1. Column-wise Mean
# 2. Out-of-Core Covariance Matrix Calculation

Progress:  2    Time: 0:00:00
Progress:  6    Time: 0:00:00
# 3. PC Score (Z = XV) is being calculated.
# 4. Out-of-Core PC Score Calculation
# 5. Delayed Centering Correction
# 6. Normalize W and Calculate Eigenvalues
####### Exact Out-of-Core PCA (Dense, Command line) #######
Parsed args:
  input  =>  "/tmp/jl_H9xyzW/Data.zst"
  outdir  =>  "/tmp/jl_M9lsNq"
  pseudocount  =>  1.0f0
  mode  =>  "dense"
  dim  =>  "3"
  chunksize  =>  "51"
  scale  =>  "raw"
# 1. Column-wise Mean
# 2. Out-of-Core Covariance Matrix Calculation

Progress:  2    Time: 0:00:00
Progress:  6    Time: 0:00:00
# 3. PC Score (Z = XV) is being calculated.
# 4. Out-of-Core PC Score Calculation
# 5. Delayed Centering Correction
# 6. Normalize W and Calculate Eigenvalues
####### Exact Out-of-Core PCA (MM-Sparse, Julia API) #######
# 1. Column-wise Mean
# 2. Out-of-Core Covariance Matrix Calculation

Progress:  2    Time: 0:00:02
Progress:  6    Time: 0:00:02
# 3. PC Score (Z = XV) is being calculated.
# 4. Out-of-Core PC Score Calculation

Progress:  2    Time: 0:00:00
Progress:  6    Time: 0:00:00
# 5. Delayed Centering Correction
# 6. Normalize W and Calculate Eigenvalues
####### Exact Out-of-Core PCA (MM-Sparse, Command line) #######
Parsed args:
  input  =>  "/tmp/jl_H9xyzW/Data.mtx.zst"
  outdir  =>  "/tmp/jl_lL3NXL"
  pseudocount  =>  1.0f0
  mode  =>  "sparse_mm"
  dim  =>  "3"
  chunksize  =>  "51"
  scale  =>  "raw"
# 1. Column-wise Mean
# 2. Out-of-Core Covariance Matrix Calculation

Progress:  2    Time: 0:00:00
Progress:  6    Time: 0:00:00
# 3. PC Score (Z = XV) is being calculated.
# 4. Out-of-Core PC Score Calculation

Progress:  2    Time: 0:00:00
Progress:  6    Time: 0:00:00
# 5. Delayed Centering Correction
# 6. Normalize W and Calculate Eigenvalues
####### Exact Out-of-Core PCA (BinCOO-Sparse, Julia API) #######
# 1. Column-wise Mean
# 2. Out-of-Core Covariance Matrix Calculation
# 3. PC Score (Z = XV) is being calculated.
# 4. Out-of-Core PC Score Calculation

Progress:  2    Time: 0:00:00
Progress:  6    Time: 0:00:00
# 5. Delayed Centering Correction
# 6. Normalize W and Calculate Eigenvalues
####### Exact Out-of-Core PCA (BinCOO-Sparse, Command line) #######
Parsed args:
  input  =>  "/tmp/jl_H9xyzW/Data.bincoo.zst"
  outdir  =>  "/tmp/jl_lL3NXL"
  pseudocount  =>  1.0f0
  mode  =>  "sparse_bincoo"
  dim  =>  "3"
  chunksize  =>  "51"
  scale  =>  "raw"
# 1. Column-wise Mean
# 2. Out-of-Core Covariance Matrix Calculation

Progress:  2    Time: 0:00:00
Progress:  6    Time: 0:00:01
# 3. PC Score (Z = XV) is being calculated.
# 4. Out-of-Core PC Score Calculation

Progress:  2    Time: 0:00:00
Progress:  6    Time: 0:00:00
# 5. Delayed Centering Correction
# 6. Normalize W and Calculate Eigenvalues
Inner product (Dense): 0.9661636212070424
Inner product (Sparse MM): 1.0000003872132601
Inner product (Sparse BinCOO): 1.0000003872132601
All tests completed.
     Testing OnlinePCA tests passed 

Testing completed after 2318.8s

PkgEval succeeded after 2678.88s