Package evaluation of Catlab on Julia 1.13.0-DEV.640 (0a970d81aa*) started at 2025-05-27T18:32:26.489 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 8.94s ################################################################################ # Installation # Installing Catlab... Resolving package versions... Installed LightXML ──────────────────── v0.9.1 Installed AlgebraicInterfaces ───────── v0.1.4 Installed MacroTools ────────────────── v0.5.16 Installed CompTime ──────────────────── v0.1.2 Installed JuliaVariables ────────────── v0.2.4 Installed DataStructures ────────────── v0.18.22 Installed NameResolution ────────────── v0.1.5 Installed OrderedCollections ────────── v1.8.1 Installed Compat ────────────────────── v4.16.0 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed DataAPI ───────────────────── v1.16.0 Installed Combinatorics ─────────────── v1.0.3 Installed GATlab ────────────────────── v0.1.5 Installed Statistics ────────────────── v1.11.1 Installed DataValueInterfaces ───────── v1.0.0 Installed Measures ──────────────────── v0.3.2 Installed StaticArraysCore ──────────── v1.4.3 Installed Colors ────────────────────── v0.12.11 Installed PrecompileTools ───────────── v1.3.2 Installed StaticArrays ──────────────── v1.9.13 Installed PrettyPrint ───────────────── v0.2.0 Installed ColorTypes ────────────────── v0.11.5 Installed StringManipulation ────────── v0.4.1 Installed Requires ──────────────────── v1.3.1 Installed JSON3 ─────────────────────── v1.14.3 Installed PEG ───────────────────────── v1.0.4 Installed JSON ──────────────────────── v0.21.4 Installed Parsers ───────────────────── v2.8.3 Installed XML2_jll ──────────────────── v2.13.6+1 Installed Tables ────────────────────── v1.12.0 Installed Reexport ──────────────────── v1.2.2 Installed PrettyTables ──────────────── v2.4.0 Installed GeneralizedGenerated ──────── v0.3.3 Installed StructEquality ────────────── v2.1.0 Installed JLLWrappers ───────────────── v1.7.0 Installed FixedPointNumbers ─────────── v0.8.5 Installed Preferences ───────────────── v1.4.3 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed TableTraits ───────────────── v1.0.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed Crayons ───────────────────── v4.1.1 Installed StructTypes ───────────────── v1.11.0 ┌ Warning: tarball content does not match git-tree-sha1 └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:766 Installed IterTools ─────────────────── v1.10.0 Installed Permutations ──────────────── v0.4.23 Installed Compose ───────────────────── v0.9.6 Installed MLStyle ───────────────────── v0.4.17 Installed Catlab ────────────────────── v0.16.20 Cloning [227ef7b5-1206-438b-ac65-934d6da304b8] ACSets from https://github.com/AlgebraicJulia/ACSets.jl.git Installed ACSets ────────────────────── v0.2.24 Installing 2 artifacts Installed artifact Libiconv 1.9 MiB Installed artifact XML2 2.5 MiB Updating `~/.julia/environments/v1.13/Project.toml` [134e5e36] + Catlab v0.16.20 Updating `~/.julia/environments/v1.13/Manifest.toml` [227ef7b5] + ACSets v0.2.24 [23cfdc9f] + AlgebraicInterfaces v0.1.4 [134e5e36] + Catlab v0.16.20 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌅ [5ae59095] + Colors v0.12.11 [861a8166] + Combinatorics v1.0.3 [0fb5dd42] + CompTime v0.1.2 [34da2185] + Compat v4.16.0 [a81c6b42] + Compose v0.9.6 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [53c48c17] + FixedPointNumbers v0.8.5 ⌅ [f0ffcf3b] + GATlab v0.1.5 [6b9d7cbe] + GeneralizedGenerated v0.3.3 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.3 [b14d175d] + JuliaVariables v0.2.4 [b964fa9f] + LaTeXStrings v1.4.0 [9c8b4983] + LightXML v0.9.1 [d8e11817] + MLStyle v0.4.17 [1914dd2f] + MacroTools v0.5.16 [442fdcdd] + Measures v0.3.2 [71a1bf82] + NameResolution v0.1.5 [bac558e1] + OrderedCollections v1.8.1 [12d937ae] + PEG v1.0.4 [69de0a69] + Parsers v2.8.3 [2ae35dd2] + Permutations v0.4.23 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [8162dcfd] + PrettyPrint v0.2.0 [08abe8d2] + PrettyTables v2.4.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [892a3eda] + StringManipulation v0.4.1 [6ec83bb0] + StructEquality v2.1.0 [856f2bd8] + StructTypes v1.11.0 [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [94ce4f54] + Libiconv_jll v1.18.0+0 ⌅ [02c8fc9c] + XML2_jll v2.13.6+1 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.12.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [458c3c95] + OpenSSL_jll v3.5.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 10.24s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 5060.9 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 25 already precompiled. Precompiling package dependencies... ERROR: LoadError: The following 2 direct dependencies failed to precompile: MetaGraphs Failed to precompile MetaGraphs [626554b9-1ddb-594c-aa3c-2596fe9399a5] to "/home/pkgeval/.julia/compiled/v1.13/MetaGraphs/jl_flzjc6" (ProcessExited(1)). Error encountered while load FileIO.File{FileIO.DataFormat{:JLD2}, String}("/tmp/jl_cWjo93"). Fatal error: ERROR: LoadError: ConcurrencyViolationError("deadlock detected in loading JLD2 using JLD2") Stacktrace: [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2183 [2] start_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2191 [3] _require_prelocked(uuidkey::Base.PkgId, env::Nothing) @ Base ./loading.jl:2461 [4] _require_prelocked @ ./loading.jl:2460 [inlined] [5] macro expansion @ ./lock.jl:376 [inlined] [6] __require(uuidkey::Base.PkgId) @ Base ./loading.jl:2458 [7] require @ ./loading.jl:2456 [inlined] [8] #37 @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203 [inlined] [9] lock(f::FileIO.var"#37#38"{Base.PkgId}, l::ReentrantLock) @ Base ./lock.jl:335 [10] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203 [11] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined] [12] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined] [13] load(::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113 [14] load @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined] [15] #111 @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [inlined] [16] mktemp(fn::JLD2.var"#111#112"{Symbol, Vector{Float64}, NTuple{5, Int64}, String, Dict{String, Int64}, Matrix{ComplexF64}, Vector{Float64}, Float64, Int64}, parent::String) @ Base.Filesystem ./file.jl:870 [17] mktemp(fn::Function) @ Base.Filesystem ./file.jl:868 [18] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined] [19] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [20] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined] [21] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] [22] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:118 Stacktrace: [1] handle_error(e::ConcurrencyViolationError, q::Base.PkgId, bt::Vector{Union{Ptr{Nothing}, Base.InterpreterIP}}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:71 [2] handle_exceptions(exceptions::Vector{Tuple{Any, Union{Base.PkgId, Module}, Vector}}, action::String) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:66 [3] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:228 [4] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined] [5] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined] [6] load(::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113 [7] load @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined] [8] #111 @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [inlined] [9] mktemp(fn::JLD2.var"#111#112"{Symbol, Vector{Float64}, NTuple{5, Int64}, String, Dict{String, Int64}, Matrix{ComplexF64}, Vector{Float64}, Float64, Int64}, parent::String) @ Base.Filesystem ./file.jl:870 [10] mktemp(fn::Function) @ Base.Filesystem ./file.jl:868 [11] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined] [12] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [13] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined] [14] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] [15] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:118 [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [17] IncludeInto @ ./Base.jl:311 [inlined] [18] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/JLD2.jl:518 [19] include(mod::Module, _path::String) @ Base ./Base.jl:309 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3000 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [24] include_string @ ./loading.jl:2856 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [26] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/precompile.jl:3 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/JLD2.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile JLD2 [033835bb-8acc-5ee8-8aae-3f567f8a3819] to "/home/pkgeval/.julia/compiled/v1.13/JLD2/jl_DXSk7w" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3287 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#232 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3858 [11] maybe_cachefile_lock @ ./loading.jl:3855 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [14] macro expansion @ ./loading.jl:2394 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [17] require @ ./loading.jl:2335 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [21] top-level scope @ ~/.julia/packages/MetaGraphs/qq8oz/src/MetaGraphs.jl:3 [22] include(mod::Module, _path::String) @ Base ./Base.jl:309 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3000 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [27] include_string @ ./loading.jl:2856 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [29] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/MetaGraphs/qq8oz/src/MetaGraphs.jl:1 in expression starting at stdin:5 CatlabMetaGraphsExt Failed to precompile CatlabMetaGraphsExt [290f8f77-2072-5e21-992d-8502a00cff2b] to "/home/pkgeval/.julia/compiled/v1.13/CatlabMetaGraphsExt/jl_mDnHr6" (ProcessExited(1)). Error encountered while load FileIO.File{FileIO.DataFormat{:JLD2}, String}("/tmp/jl_ub7mDG"). Fatal error: ERROR: LoadError: ConcurrencyViolationError("deadlock detected in loading JLD2 using JLD2") Stacktrace: [1] canstart_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2183 [2] start_loading(modkey::Base.PkgId, build_id::UInt128, stalecheck::Bool) @ Base ./loading.jl:2191 [3] _require_prelocked(uuidkey::Base.PkgId, env::Nothing) @ Base ./loading.jl:2461 [4] _require_prelocked @ ./loading.jl:2460 [inlined] [5] macro expansion @ ./lock.jl:376 [inlined] [6] __require(uuidkey::Base.PkgId) @ Base ./loading.jl:2458 [7] require @ ./loading.jl:2456 [inlined] [8] #37 @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203 [inlined] [9] lock(f::FileIO.var"#37#38"{Base.PkgId}, l::ReentrantLock) @ Base ./lock.jl:335 [10] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:203 [11] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined] [12] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined] [13] load(::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113 [14] load @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined] [15] #111 @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [inlined] [16] mktemp(fn::JLD2.var"#111#112"{Symbol, Vector{Float64}, NTuple{5, Int64}, String, Dict{String, Int64}, Matrix{ComplexF64}, Vector{Float64}, Float64, Int64}, parent::String) @ Base.Filesystem ./file.jl:870 [17] mktemp(fn::Function) @ Base.Filesystem ./file.jl:868 [18] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined] [19] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [20] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined] [21] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] [22] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:118 Stacktrace: [1] handle_error(e::ConcurrencyViolationError, q::Base.PkgId, bt::Vector{Union{Ptr{Nothing}, Base.InterpreterIP}}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:71 [2] handle_exceptions(exceptions::Vector{Tuple{Any, Union{Base.PkgId, Module}, Vector}}, action::String) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/error_handling.jl:66 [3] action(::Symbol, ::Vector{Union{Base.PkgId, Module}}, ::FileIO.Formatted; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:228 [4] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:196 [inlined] [5] action @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:185 [inlined] [6] load(::String; options::@Kwargs{}) @ FileIO ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:113 [7] load @ ~/.julia/packages/FileIO/ePyCW/src/loadsave.jl:109 [inlined] [8] #111 @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:26 [inlined] [9] mktemp(fn::JLD2.var"#111#112"{Symbol, Vector{Float64}, NTuple{5, Int64}, String, Dict{String, Int64}, Matrix{ComplexF64}, Vector{Float64}, Float64, Int64}, parent::String) @ Base.Filesystem ./file.jl:870 [10] mktemp(fn::Function) @ Base.Filesystem ./file.jl:868 [11] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:15 [inlined] [12] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [13] macro expansion @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:14 [inlined] [14] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:121 [inlined] [15] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/precompile.jl:118 [16] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [17] IncludeInto @ ./Base.jl:311 [inlined] [18] top-level scope @ ~/.julia/packages/JLD2/wLPAN/src/JLD2.jl:518 [19] include(mod::Module, _path::String) @ Base ./Base.jl:309 [20] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3000 [21] top-level scope @ stdin:5 [22] eval(m::Module, e::Any) @ Core ./boot.jl:489 [23] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [24] include_string @ ./loading.jl:2856 [inlined] [25] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [26] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/precompile.jl:3 in expression starting at /home/pkgeval/.julia/packages/JLD2/wLPAN/src/JLD2.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile JLD2 [033835bb-8acc-5ee8-8aae-3f567f8a3819] to "/home/pkgeval/.julia/compiled/v1.13/JLD2/jl_0MsPXN" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3287 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#232 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3858 [11] maybe_cachefile_lock @ ./loading.jl:3855 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [14] macro expansion @ ./loading.jl:2394 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [17] require @ ./loading.jl:2335 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [21] top-level scope @ ~/.julia/packages/MetaGraphs/qq8oz/src/MetaGraphs.jl:3 [22] include(mod::Module, _path::String) @ Base ./Base.jl:309 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3000 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [27] include_string @ ./loading.jl:2856 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [29] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/MetaGraphs/qq8oz/src/MetaGraphs.jl:1 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile MetaGraphs [626554b9-1ddb-594c-aa3c-2596fe9399a5] to "/home/pkgeval/.julia/compiled/v1.13/MetaGraphs/jl_XLaWBR" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3287 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:94 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:89 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:115 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#232 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3858 [11] maybe_cachefile_lock @ ./loading.jl:3855 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [14] macro expansion @ ./loading.jl:2394 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [17] require @ ./loading.jl:2335 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] _eval_import(imported::Bool, to::Module, from::Nothing, paths::Expr) @ Base ./module.jl:111 [20] top-level scope @ ~/.julia/packages/Catlab/1srGD/ext/CatlabMetaGraphsExt.jl:5 [21] include(mod::Module, _path::String) @ Base ./Base.jl:309 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3000 [23] top-level scope @ stdin:5 [24] eval(m::Module, e::Any) @ Core ./boot.jl:489 [25] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [26] include_string @ ./loading.jl:2856 [inlined] [27] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [28] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/Catlab/1srGD/ext/CatlabMetaGraphsExt.jl:1 in expression starting at stdin:5 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 793.61s ################################################################################ # Testing # Testing Catlab Status `/tmp/jl_n7d1MB/Project.toml` [227ef7b5] ACSets v0.2.24 [23cfdc9f] AlgebraicInterfaces v0.1.4 [134e5e36] Catlab v0.16.20 [a81c6b42] Compose v0.9.6 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 ⌅ [f0ffcf3b] GATlab v0.1.5 [86223c79] Graphs v1.12.1 [42fd0dbc] IterativeSolvers v0.9.4 [0f8b85d8] JSON3 v1.14.3 [9c8b4983] LightXML v0.9.1 ⌃ [626554b9] MetaGraphs v0.7.2 [12d937ae] PEG v1.0.4 [90137ffa] StaticArrays v1.9.13 [bd369af6] Tables v1.12.0 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_n7d1MB/Manifest.toml` [227ef7b5] ACSets v0.2.24 [23cfdc9f] AlgebraicInterfaces v0.1.4 [ec485272] ArnoldiMethod v0.4.0 [134e5e36] Catlab v0.16.20 ⌅ [3da002f7] ColorTypes v0.11.5 ⌅ [5ae59095] Colors v0.12.11 [861a8166] Combinatorics v1.0.3 [0fb5dd42] CompTime v0.1.2 [34da2185] Compat v4.16.0 [a81c6b42] Compose v0.9.6 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [5789e2e9] FileIO v1.17.0 [53c48c17] FixedPointNumbers v0.8.5 ⌅ [f0ffcf3b] GATlab v0.1.5 [6b9d7cbe] GeneralizedGenerated v0.3.3 [86223c79] Graphs v1.12.1 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.3 [41ab1584] InvertedIndices v1.3.1 [c8e1da08] IterTools v1.10.0 [42fd0dbc] IterativeSolvers v0.9.4 [82899510] IteratorInterfaceExtensions v1.0.0 ⌅ [033835bb] JLD2 v0.4.54 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.3 [b14d175d] JuliaVariables v0.2.4 [b964fa9f] LaTeXStrings v1.4.0 [9c8b4983] LightXML v0.9.1 [d8e11817] MLStyle v0.4.17 [1914dd2f] MacroTools v0.5.16 [442fdcdd] Measures v0.3.2 ⌃ [626554b9] MetaGraphs v0.7.2 [e1d29d7a] Missings v1.2.0 [71a1bf82] NameResolution v0.1.5 [bac558e1] OrderedCollections v1.8.1 [12d937ae] PEG v1.0.4 [69de0a69] Parsers v2.8.3 [2ae35dd2] Permutations v0.4.23 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [8162dcfd] PrettyPrint v0.2.0 [08abe8d2] PrettyTables v2.4.0 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [91c51154] SentinelArrays v1.4.8 [699a6c99] SimpleTraits v0.9.4 [a2af1166] SortingAlgorithms v1.2.1 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [892a3eda] StringManipulation v0.4.1 [6ec83bb0] StructEquality v2.1.0 [856f2bd8] StructTypes v1.11.0 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [3bb67fe8] TranscodingStreams v0.11.3 [94ce4f54] Libiconv_jll v1.18.0+0 ⌅ [02c8fc9c] XML2_jll v2.13.6+1 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.7.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.12.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.5.20 [4536629a] OpenBLAS_jll v0.3.29+0 [458c3c95] OpenSSL_jll v3.5.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time Theories | 275 275 1m33.2s Categories: Error During Test at /home/pkgeval/.julia/packages/Catlab/1srGD/test/categorical_algebra/FinCats.jl:40 Test threw exception Expression: edges(g) == [1, 3] MethodError: no method matching edges(::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, StaticArraysCore.SVector{1, Int64}}}) The function `edges` exists, but no method is defined for this combination of argument types. Closest candidates are: edges(!Matched::Catlab.CategoricalAlgebra.FinCats.Path) @ Catlab ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:181 edges(!Matched::Catlab.Graphs.PropertyGraphs.AbstractPropertyGraph) @ Catlab ~/.julia/packages/Catlab/1srGD/src/graphs/PropertyGraphs.jl:167 edges(!Matched::Catlab.Graphs.BipartiteGraphs.HasBipartiteGraph) @ Catlab ~/.julia/packages/Catlab/1srGD/src/graphs/BipartiteGraphs.jl:210 ... Stacktrace: [1] top-level scope @ ~/.julia/packages/Catlab/1srGD/test/categorical_algebra/FinCats.jl:518 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:727 [inlined] Categories: Error During Test at /home/pkgeval/.julia/packages/Catlab/1srGD/test/categorical_algebra/FinCats.jl:76 Test threw exception Expression: hom_map(G, Path(h, [1, 2])) == Path(k, [1, 2, 3, 4]) MethodError: no method matching has_part(::Catlab.Graphs.BasicGraphs.Graph, ::Symbol, ::Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, StaticArraysCore.SVector{0, Int64}}) The function `has_part` exists, but no method is defined for this combination of argument types. Closest candidates are: has_part(::Any, ::Symbol, !Matched::Int64) @ ACSets ~/.julia/packages/ACSets/arYE8/src/ACSetInterface.jl:102 has_part(::ACSets.DenseACSets.StructACSet{S}, ::Symbol) where S @ ACSets ~/.julia/packages/ACSets/arYE8/src/DenseACSets.jl:467 has_part(::Any, ::Symbol, !Matched::AbstractVector{Int64}) @ ACSets ~/.julia/packages/ACSets/arYE8/src/ACSetInterface.jl:103 ... Stacktrace: [1] has_edge(g::Catlab.Graphs.BasicGraphs.Graph, e::Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, StaticArraysCore.SVector{0, Int64}}) @ Catlab.Graphs.BasicGraphs ~/.julia/packages/Catlab/1srGD/src/graphs/BasicGraphs.jl:124 [2] (::Catlab.CategoricalAlgebra.FinCats.var"#Path##0#Path##1"{Catlab.Graphs.BasicGraphs.Graph})(e::Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, StaticArraysCore.SVector{0, Int64}}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:187 [3] _all @ ./anyall.jl:211 [inlined] [4] all @ ./reducedim.jl:996 [inlined] [5] Catlab.CategoricalAlgebra.FinCats.Path(g::Catlab.Graphs.BasicGraphs.Graph, es::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:187 [6] coerce_path(g::Catlab.Graphs.BasicGraphs.Graph, x::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:233 [7] (::Catlab.CategoricalAlgebra.FinCats.var"#compose##0#compose##1"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}})(f::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}) @ Catlab.CategoricalAlgebra.FinCats ./none:-1 [8] MappingRF @ ./reduce.jl:98 [inlined] [9] afoldl(::Base.MappingRF{Catlab.CategoricalAlgebra.FinCats.var"#compose##0#compose##1"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}}, Base.BottomRF{typeof(vcat)}}, ::Base._InitialValue, ::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, ::Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}) @ Base ./operators.jl:600 [10] _foldl_impl(op::Base.MappingRF{Catlab.CategoricalAlgebra.FinCats.var"#compose##0#compose##1"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}}, Base.BottomRF{typeof(vcat)}}, init::Base._InitialValue, itr::Tuple{Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}) @ Base ./reduce.jl:66 [11] foldl_impl(op::Base.MappingRF{Catlab.CategoricalAlgebra.FinCats.var"#compose##0#compose##1"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}}, Base.BottomRF{typeof(vcat)}}, nt::Base._InitialValue, itr::Tuple{Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}) @ Base ./reduce.jl:46 [12] mapfoldl_impl(f::typeof(identity), op::typeof(vcat), nt::Base._InitialValue, itr::Base.Generator{Tuple{Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}, Catlab.CategoricalAlgebra.FinCats.var"#compose##0#compose##1"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}}}) @ Base ./reduce.jl:42 [13] mapfoldl(f::Function, op::Function, itr::Base.Generator{Tuple{Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}, Catlab.CategoricalAlgebra.FinCats.var"#compose##0#compose##1"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}}}; init::Base._InitialValue) @ Base ./reduce.jl:173 [14] mapreduce(f::Function, op::Function, itr::Base.Generator{Tuple{Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}, Catlab.CategoricalAlgebra.FinCats.var"#compose##0#compose##1"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}}}; kw::@Kwargs{}) @ Base ./reduce.jl:305 [15] reduce(op::Function, itr::Base.Generator{Tuple{Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}, Catlab.CategoricalAlgebra.FinCats.var"#compose##0#compose##1"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}}}; kw::@Kwargs{}) @ Base ./reduce.jl:489 [16] compose(::Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, ::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, ::Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:227 [17] (::Catlab.CategoricalAlgebra.FinCats.var"#hom_map##2#hom_map##3"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}})(::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, ::Vararg{Any}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:394 [18] BottomRF @ ./reduce.jl:84 [inlined] [19] MappingRF @ ./reduce.jl:98 [inlined] [20] _foldl_impl @ ./reduce.jl:60 [inlined] [21] foldl_impl @ ./reduce.jl:46 [inlined] [22] mapfoldl_impl @ ./reduce.jl:42 [inlined] [23] _mapreduce_dim @ ./reducedim.jl:335 [inlined] [24] mapreduce @ ./reducedim.jl:330 [inlined] [25] hom_map(F::Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Vector{Int64}, Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}}, path::Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:394 [26] top-level scope @ ~/.julia/packages/Catlab/1srGD/test/categorical_algebra/FinCats.jl:518 [27] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:727 [inlined] Categories: Error During Test at /home/pkgeval/.julia/packages/Catlab/1srGD/test/categorical_algebra/FinCats.jl:77 Test threw exception Expression: F ⋅ G == FinFunctor([1, 5], [[1, 2, 3, 4]], C, E) MethodError: no method matching has_part(::Catlab.Graphs.BasicGraphs.Graph, ::Symbol, ::Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, StaticArraysCore.SVector{0, Int64}}) The function `has_part` exists, but no method is defined for this combination of argument types. Closest candidates are: has_part(::Any, ::Symbol, !Matched::Int64) @ ACSets ~/.julia/packages/ACSets/arYE8/src/ACSetInterface.jl:102 has_part(::ACSets.DenseACSets.StructACSet{S}, ::Symbol) where S @ ACSets ~/.julia/packages/ACSets/arYE8/src/DenseACSets.jl:467 has_part(::Any, ::Symbol, !Matched::AbstractVector{Int64}) @ ACSets ~/.julia/packages/ACSets/arYE8/src/ACSetInterface.jl:103 ... Stacktrace: [1] has_edge(g::Catlab.Graphs.BasicGraphs.Graph, e::Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, StaticArraysCore.SVector{0, Int64}}) @ Catlab.Graphs.BasicGraphs ~/.julia/packages/Catlab/1srGD/src/graphs/BasicGraphs.jl:124 [2] (::Catlab.CategoricalAlgebra.FinCats.var"#Path##0#Path##1"{Catlab.Graphs.BasicGraphs.Graph})(e::Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, StaticArraysCore.SVector{0, Int64}}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:187 [3] _all @ ./anyall.jl:211 [inlined] [4] all @ ./reducedim.jl:996 [inlined] [5] Catlab.CategoricalAlgebra.FinCats.Path(g::Catlab.Graphs.BasicGraphs.Graph, es::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:187 [6] coerce_path(g::Catlab.Graphs.BasicGraphs.Graph, x::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:233 [7] (::Catlab.CategoricalAlgebra.FinCats.var"#compose##0#compose##1"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}})(f::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}) @ Catlab.CategoricalAlgebra.FinCats ./none:-1 [8] MappingRF @ ./reduce.jl:98 [inlined] [9] afoldl(::Base.MappingRF{Catlab.CategoricalAlgebra.FinCats.var"#compose##0#compose##1"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}}, Base.BottomRF{typeof(vcat)}}, ::Base._InitialValue, ::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, ::Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}) @ Base ./operators.jl:600 [10] _foldl_impl(op::Base.MappingRF{Catlab.CategoricalAlgebra.FinCats.var"#compose##0#compose##1"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}}, Base.BottomRF{typeof(vcat)}}, init::Base._InitialValue, itr::Tuple{Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}) @ Base ./reduce.jl:66 [11] foldl_impl(op::Base.MappingRF{Catlab.CategoricalAlgebra.FinCats.var"#compose##0#compose##1"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}}, Base.BottomRF{typeof(vcat)}}, nt::Base._InitialValue, itr::Tuple{Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}) @ Base ./reduce.jl:46 [12] mapfoldl_impl(f::typeof(identity), op::typeof(vcat), nt::Base._InitialValue, itr::Base.Generator{Tuple{Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}, Catlab.CategoricalAlgebra.FinCats.var"#compose##0#compose##1"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}}}) @ Base ./reduce.jl:42 [13] mapfoldl(f::Function, op::Function, itr::Base.Generator{Tuple{Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}, Catlab.CategoricalAlgebra.FinCats.var"#compose##0#compose##1"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}}}; init::Base._InitialValue) @ Base ./reduce.jl:173 [14] mapreduce(f::Function, op::Function, itr::Base.Generator{Tuple{Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}, Catlab.CategoricalAlgebra.FinCats.var"#compose##0#compose##1"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}}}; kw::@Kwargs{}) @ Base ./reduce.jl:305 [15] reduce(op::Function, itr::Base.Generator{Tuple{Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}, Catlab.CategoricalAlgebra.FinCats.var"#compose##0#compose##1"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}}}; kw::@Kwargs{}) @ Base ./reduce.jl:489 [16] compose(::Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, ::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, ::Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:227 [17] (::Catlab.CategoricalAlgebra.FinCats.var"#hom_map##2#hom_map##3"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}})(::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}, ::Vararg{Any}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:394 [18] BottomRF @ ./reduce.jl:84 [inlined] [19] MappingRF @ ./reduce.jl:98 [inlined] [20] _foldl_impl @ ./reduce.jl:60 [inlined] [21] foldl_impl @ ./reduce.jl:46 [inlined] [22] mapfoldl_impl @ ./reduce.jl:42 [inlined] [23] _mapreduce_dim @ ./reducedim.jl:335 [inlined] [24] mapreduce @ ./reducedim.jl:330 [inlined] [25] hom_map(F::Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Vector{Int64}, Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}}, path::Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:394 [26] #44 @ ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:556 [inlined] [27] iterate @ ./generator.jl:48 [inlined] [28] _collect(c::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}, itr::Base.Generator{Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}, Catlab.CategoricalAlgebra.FinCats.var"#44#45"{Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Vector{Int64}, Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}}}}, ::Base.EltypeUnknown, isz::Base.HasShape{1}) @ Base ./array.jl:810 [29] collect_similar @ ./array.jl:732 [inlined] [30] map @ ./abstractarray.jl:3366 [inlined] [31] #mapvals#80 @ ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:790 [inlined] [32] mapvals @ ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:785 [inlined] [33] do_compose(F::Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Vector{Int64}, Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}}, G::Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Vector{Int64}, Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:555 [34] compose_id @ ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/Categories.jl:310 [inlined] [35] macro expansion @ ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/Categories.jl:286 [inlined] [36] #compose#5 @ ./none:0 [inlined] [37] compose @ ./none:-1 [inlined] [38] ⋅(697::Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Vector{Int64}, Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}}, 698::Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Vector{Int64}, Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Vector{Int64}}}}) @ Catlab.CategoricalAlgebra.Categories ./none:-1 [39] top-level scope @ ~/.julia/packages/Catlab/1srGD/test/categorical_algebra/FinCats.jl:518 [40] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:727 [inlined] WARNING: Detected access to binding `TestACSetsGATsInterop.Dendrogram` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `TestCSets.DDS` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `TestCSets.SetAttr` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `TestCSets.VELabeledGraph` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `TestCSets.A2` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `TestCSets.AbsMADGraph` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `TestCSets.Petri` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `TestHomSearch.SetAttr` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `TestHomSearch.##LSet#278` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `TestHomSearch.DDS` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `TestHomSearch.VELabeledGraph` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. CSets: Test Failed at /home/pkgeval/.julia/packages/Catlab/1srGD/test/categorical_algebra/HomSearch.jl:368 Expression: first(first(maximum_common_subobject(g1, g2; abstract = false))) == exp Evaluated: Catlab.Graphs.BasicGraphs.WeightedGraph{Bool}: V = 1:3 E = 1:1 Weight = 1:0 src : E → V = [2] tgt : E → V = [3] weight : E → Weight = Bool[0] == Catlab.Graphs.BasicGraphs.WeightedGraph{Bool}: V = 1:3 E = 1:1 Weight = 1:0 src : E → V = [1] tgt : E → V = [2] weight : E → Weight = Bool[0] Stacktrace: [1] top-level scope @ ~/.julia/packages/Catlab/1srGD/test/categorical_algebra/HomSearch.jl:518 [2] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:730 [inlined] [3] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [4] top-level scope @ ~/.julia/packages/Catlab/1srGD/test/categorical_algebra/CategoricalAlgebra.jl:36 [5] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1833 [inlined] [6] macro expansion @ ~/.julia/packages/Catlab/1srGD/test/categorical_algebra/CategoricalAlgebra.jl:38 [inlined] WARNING: Detected access to binding `TestHomSearch.AbsMADGraph` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `TestCatElements.Petri` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. Diagrams: Error During Test at /home/pkgeval/.julia/packages/Catlab/1srGD/test/categorical_algebra/CategoricalAlgebra.jl:42 Got exception outside of a @test LoadError: MethodError: no method matching has_part(::Catlab.Graphs.BasicGraphs.Graph, ::Symbol, ::Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, StaticArraysCore.SVector{0, Int64}}) The function `has_part` exists, but no method is defined for this combination of argument types. Closest candidates are: has_part(::Any, ::Symbol, !Matched::Int64) @ ACSets ~/.julia/packages/ACSets/arYE8/src/ACSetInterface.jl:102 has_part(::ACSets.DenseACSets.StructACSet{S}, ::Symbol) where S @ ACSets ~/.julia/packages/ACSets/arYE8/src/DenseACSets.jl:467 has_part(::Any, ::Symbol, !Matched::AbstractVector{Int64}) @ ACSets ~/.julia/packages/ACSets/arYE8/src/ACSetInterface.jl:103 ... Stacktrace: [1] has_edge(g::Catlab.Graphs.BasicGraphs.Graph, e::Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, StaticArraysCore.SVector{0, Int64}}) @ Catlab.Graphs.BasicGraphs ~/.julia/packages/Catlab/1srGD/src/graphs/BasicGraphs.jl:124 [2] (::Catlab.CategoricalAlgebra.FinCats.var"#Path##0#Path##1"{Catlab.Graphs.BasicGraphs.Graph})(e::Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, StaticArraysCore.SVector{0, Int64}}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:187 [3] _all @ ./anyall.jl:211 [inlined] [4] all @ ./reducedim.jl:996 [inlined] [5] Catlab.CategoricalAlgebra.FinCats.Path(g::Catlab.Graphs.BasicGraphs.Graph, es::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:187 [6] coerce_path(g::Catlab.Graphs.BasicGraphs.Graph, x::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:233 [7] hom(C::Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, f::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:230 [8] (::Catlab.CategoricalAlgebra.FinCats.var"#FinDomFunctor##10#FinDomFunctor##11"{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}})(g::Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, Edges} where Edges<:AbstractVector{Int64}}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:512 [9] iterate @ ./generator.jl:48 [inlined] [10] _collect @ ./array.jl:810 [inlined] [11] collect_similar @ ./array.jl:732 [inlined] [12] map @ ./abstractarray.jl:3366 [inlined] [13] mappairs @ ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:772 [inlined] [14] Functor @ ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:512 [inlined] [15] do_compose(F::Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Vector{Int64}, Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, StaticArraysCore.SVector{1, Int64}}}}, G::Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Vector{Int64}, Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, StaticArraysCore.SVector{1, Int64}}}}) @ Catlab.CategoricalAlgebra.FinCats ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/FinCats.jl:555 [16] compose_id @ ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/Categories.jl:310 [inlined] [17] macro expansion @ ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/Categories.jl:286 [inlined] [18] #compose#5 @ ./none:0 [inlined] [19] compose @ ./none:-1 [inlined] [20] ⋅ @ ./none:-1 [inlined] [21] compose(f::Catlab.CategoricalAlgebra.Diagrams.SimpleDiagramHom{AlgebraicInterfaces.id, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Vector{Int64}, Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, StaticArraysCore.SVector{1, Int64}}}}, Catlab.CategoricalAlgebra.FinCats.FinTransformationMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Vector{Catlab.Theories.FreeSchema.Ob{:generator}}, Vector{Catlab.Theories.FreeSchema.Hom{:generator}}}, Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Vector{Catlab.Theories.FreeSchema.Ob{:generator}}, Vector{Catlab.Theories.FreeSchema.Hom{:generator}}}, Vector{Catlab.Theories.FreeSchema.Hom}}, Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Vector{Catlab.Theories.FreeSchema.Ob{:generator}}, Vector{Catlab.Theories.FreeSchema.Hom{:generator}}}}, g::Catlab.CategoricalAlgebra.Diagrams.SimpleDiagramHom{AlgebraicInterfaces.id, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Vector{Int64}, Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, StaticArraysCore.SVector{1, Int64}}}}, Catlab.CategoricalAlgebra.FinCats.FinTransformationMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Vector{Catlab.Theories.FreeSchema.Ob{:generator}}, Vector{Catlab.Theories.FreeSchema.Hom{:generator}}}, Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Vector{Catlab.Theories.FreeSchema.Ob{:generator}}, Vector{Catlab.Theories.FreeSchema.Hom{:generator}}}, Vector{Catlab.Theories.FreeSchema.Hom}}, Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Vector{Catlab.Theories.FreeSchema.Ob{:generator}}, Vector{Catlab.Theories.FreeSchema.Hom{:generator}}}}) @ Catlab.CategoricalAlgebra.Diagrams ~/.julia/packages/Catlab/1srGD/src/categorical_algebra/Diagrams.jl:194 [22] ⋅(802::Catlab.CategoricalAlgebra.Diagrams.SimpleDiagramHom{AlgebraicInterfaces.id, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Vector{Int64}, Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, StaticArraysCore.SVector{1, Int64}}}}, Catlab.CategoricalAlgebra.FinCats.FinTransformationMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Vector{Catlab.Theories.FreeSchema.Ob{:generator}}, Vector{Catlab.Theories.FreeSchema.Hom{:generator}}}, Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Vector{Catlab.Theories.FreeSchema.Ob{:generator}}, Vector{Catlab.Theories.FreeSchema.Hom{:generator}}}, Vector{Catlab.Theories.FreeSchema.Hom}}, Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Vector{Catlab.Theories.FreeSchema.Ob{:generator}}, Vector{Catlab.Theories.FreeSchema.Hom{:generator}}}}, 803::Catlab.CategoricalAlgebra.Diagrams.SimpleDiagramHom{AlgebraicInterfaces.id, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Vector{Int64}, Vector{Catlab.CategoricalAlgebra.FinCats.Path{Int64, Int64, StaticArraysCore.SVector{1, Int64}}}}, Catlab.CategoricalAlgebra.FinCats.FinTransformationMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Vector{Catlab.Theories.FreeSchema.Ob{:generator}}, Vector{Catlab.Theories.FreeSchema.Hom{:generator}}}, Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Vector{Catlab.Theories.FreeSchema.Ob{:generator}}, Vector{Catlab.Theories.FreeSchema.Hom{:generator}}}, Vector{Catlab.Theories.FreeSchema.Hom}}, Catlab.CategoricalAlgebra.FinCats.FinDomFunctorMap{Catlab.CategoricalAlgebra.FinCats.FreeCatGraph{Catlab.Graphs.BasicGraphs.Graph}, Catlab.CategoricalAlgebra.FinCats.FinCatPresentation{Catlab.Theories.ThSchema.Meta.T, Union{Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Ob}, Union{Catlab.Theories.FreeSchema.Attr, Catlab.Theories.FreeSchema.AttrType, Catlab.Theories.FreeSchema.Hom}}, Vector{Catlab.Theories.FreeSchema.Ob{:generator}}, Vector{Catlab.Theories.FreeSchema.Hom{:generator}}}}) @ Catlab.CategoricalAlgebra.Diagrams ./none:-1 [23] top-level scope @ ~/.julia/packages/Catlab/1srGD/test/categorical_algebra/Diagrams.jl:49 [24] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [25] top-level scope @ ~/.julia/packages/Catlab/1srGD/test/categorical_algebra/CategoricalAlgebra.jl:43 [26] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1833 [inlined] [27] macro expansion @ ~/.julia/packages/Catlab/1srGD/test/categorical_algebra/CategoricalAlgebra.jl:43 [inlined] [28] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [29] top-level scope @ ~/.julia/packages/Catlab/1srGD/test/runtests.jl:8 [30] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1833 [inlined] [31] macro expansion @ ~/.julia/packages/Catlab/1srGD/test/runtests.jl:8 [inlined] [32] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [33] top-level scope @ none:6 [34] eval(m::Module, e::Any) @ Core ./boot.jl:489 [35] exec_options(opts::Base.JLOptions) @ Base ./client.jl:297 [36] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/Catlab/1srGD/test/categorical_algebra/Diagrams.jl:1 WARNING: Detected access to binding `TestChase.School` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `TestChase.Loop` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `TestFunctorialDataMigrations.AcsetSet` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `TestFunctorialDataMigrations.DDS` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `TestFunctorialDataMigrations.LabeledDDS` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `TestFunctorialDataMigrations.Thing1WithProp` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `TestFunctorialDataMigrations.Thing2WithProp` in a world prior to its definition world. Julia 1.12 has introduced more strict world age semantics for global bindings. !!! This code may malfunction under Revise. !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 402 running 1 of 2 signal (10): User defined signal 1 unknown function (ip: 0x7ce462511f14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_30707.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 jl_apply at /source/src/julia.h:2336 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) _ZN4llvm8dyn_castINS_10VectorTypeENS_4TypeEEEDcPT0_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN12_GLOBAL__N_18Verifier22visitGetElementPtrInstERN4llvm17GetElementPtrInstE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN12_GLOBAL__N_18Verifier6verifyERKN4llvm8FunctionE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm14verifyFunctionERKNS_8FunctionEPNS_11raw_ostreamE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) verifyLLVMIR at /source/src/pipeline.cpp:888 run at /source/src/llvm-propagate-addrspaces.cpp:309 run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_8FunctionENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm27ModuleToFunctionPassAdaptor3runERNS_6ModuleERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/usr/include/llvm/IR/PassManagerInternal.h:91 _ZN4llvm11PassManagerINS_6ModuleENS_15AnalysisManagerIS1_JEEEJEE3runERS1_RS3_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) run at /source/src/pipeline.cpp:791 operator() at /source/src/jitlayers.cpp:1475 withModuleDo<(anonymous namespace)::sizedOptimizerT::operator()(llvm::orc::ThreadSafeModule) [with long unsigned int N = 4]:: > at /source/usr/include/llvm/ExecutionEngine/Orc/ThreadSafeModule.h:136 [inlined] operator() at /source/src/jitlayers.cpp:1436 [inlined] operator() at /source/src/jitlayers.cpp:1588 [inlined] addModule at /source/src/jitlayers.cpp:2045 jl_compile_codeinst_now at /source/src/jitlayers.cpp:649 jl_compile_codeinst_impl at /source/src/jitlayers.cpp:840 jl_compile_method_internal at /source/src/gf.c:3004 _jl_invoke at /source/src/gf.c:3482 [inlined] ijl_apply_generic at /source/src/gf.c:3690 backtracking_search at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/HomSearch.jl:331 unknown function (ip: 0x7ce43476c2e5) at (unknown file) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 #backtracking_search#25 at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/HomSearch.jl:324 backtracking_search at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/HomSearch.jl:224 [inlined] #homomorphisms#4 at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/HomSearch.jl:135 [inlined] homomorphisms at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/HomSearch.jl:130 unknown function (ip: 0x7ce435641ffd) at (unknown file) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 #homomorphism#2 at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/HomSearch.jl:107 homomorphism at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/HomSearch.jl:106 [inlined] #homomorphism#1 at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/HomSearch.jl:103 [inlined] homomorphism at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/HomSearch.jl:103 unknown function (ip: 0x7ce435641ed6) at (unknown file) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 #pres_to_eds#5 at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/Chase.jl:90 pres_to_eds at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/Chase.jl:67 unknown function (ip: 0x7ce4355396a6) at (unknown file) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 #_#5 at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/FunctorialDataMigrations.jl:228 SigmaMigrationFunctor at /home/pkgeval/.julia/packages/Catlab/1srGD/src/categorical_algebra/FunctorialDataMigrations.jl:204 unknown function (ip: 0x7ce434fc5152) at (unknown file) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 jl_apply at /source/src/julia.h:2336 [inlined] do_call at /source/src/interpreter.c:124 eval_value at /source/src/interpreter.c:242 eval_stmt_value at /source/src/interpreter.c:193 [inlined] eval_body at /source/src/interpreter.c:707 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:776 jl_eval_module_expr at /source/src/toplevel.c:200 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:661 jl_toplevel_eval_flex at /source/src/toplevel.c:716 ijl_toplevel_eval at /source/src/toplevel.c:788 ijl_toplevel_eval_in at /source/src/toplevel.c:833 eval at ./boot.jl:489 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 _include at ./loading.jl:2906 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_74909.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 jl_apply at /source/src/julia.h:2336 [inlined] do_call at /source/src/interpreter.c:124 eval_value at /source/src/interpreter.c:242 eval_stmt_value at /source/src/interpreter.c:193 [inlined] eval_body at /source/src/interpreter.c:707 eval_body at /source/src/interpreter.c:557 eval_body at /source/src/interpreter.c:557 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:776 jl_eval_module_expr at /source/src/toplevel.c:200 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:661 jl_toplevel_eval_flex at /source/src/toplevel.c:716 ijl_toplevel_eval at /source/src/toplevel.c:788 ijl_toplevel_eval_in at /source/src/toplevel.c:833 eval at ./boot.jl:489 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 _include at ./loading.jl:2906 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_74909.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 jl_apply at /source/src/julia.h:2336 [inlined] do_call at /source/src/interpreter.c:124 eval_value at /source/src/interpreter.c:242 eval_stmt_value at /source/src/interpreter.c:193 [inlined] eval_body at /source/src/interpreter.c:707 eval_body at /source/src/interpreter.c:557 eval_body at /source/src/interpreter.c:557 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:776 jl_toplevel_eval_flex at /source/src/toplevel.c:716 ijl_toplevel_eval at /source/src/toplevel.c:788 ijl_toplevel_eval_in at /source/src/toplevel.c:833 eval at ./boot.jl:489 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 _include at ./loading.jl:2906 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_74909.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 jl_apply at /source/src/julia.h:2336 [inlined] do_call at /source/src/interpreter.c:124 eval_value at /source/src/interpreter.c:242 eval_stmt_value at /source/src/interpreter.c:193 [inlined] eval_body at /source/src/interpreter.c:707 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:776 jl_toplevel_eval_flex at /source/src/toplevel.c:716 ijl_toplevel_eval at /source/src/toplevel.c:788 ijl_toplevel_eval_in at /source/src/toplevel.c:833 eval at ./boot.jl:489 exec_options at ./client.jl:297 _start at ./client.jl:564 jfptr__start_20747.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 jl_apply at /source/src/julia.h:2336 [inlined] true_main at /source/src/jlapi.c:963 jl_repl_entrypoint at /source/src/jlapi.c:1130 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7ce4624b3249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 2 signal (10): User defined signal 1 unknown function (ip: 0x7c38d03abf14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_30707.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 jl_apply at /source/src/julia.h:2336 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_30707.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 jl_apply at /source/src/julia.h:2336 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (interactive) Task 0x00007c38b88d2b30 Total snapshots: 210. Utilization: 0% ╎210 @Base/task.jl:1150 wait_forever() 209╎ 210 @Base/task.jl:1216 wait() Thread 2 (default) Task 0x00007c38b99fc100 Total snapshots: 210. Utilization: 0% ╎210 @Base/task.jl:1150 wait_forever() 209╎ 210 @Base/task.jl:1216 wait() [1] signal 15: Terminated in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 unknown function (ip: 0x7c38d03abf14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_30707.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 jl_apply at /source/src/julia.h:2336 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 [402] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/Catlab/1srGD/test/categorical_algebra/FunctorialDataMigrations.jl:191 unknown function (ip: 0x7ce462511f14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 wait at ./task.jl:1216 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 wait_forever at ./task.jl:1150 jfptr_wait_forever_30707.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 jl_apply at /source/src/julia.h:2336 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) Allocations: 21950720 (Pool: 21950150; Big: 570); GC: 24 jfptr_wait_forever_30707.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 jl_apply at /source/src/julia.h:2336 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) jl_specializations_get_linfo_ at /source/src/gf.c:225 cache_method at /source/src/gf.c:1469 ml_matches at /source/src/gf.c:4578 ml_matches at /source/src/gf.c:4223 [inlined] ijl_matching_methods at /source/src/gf.c:2612 _methods_by_ftype at ./runtime_internals.jl:1464 [inlined] _findall at ./../usr/share/julia/Compiler/src/methodtable.jl:97 [inlined] #findall#5 at ./../usr/share/julia/Compiler/src/methodtable.jl:70 [inlined] findall at ./../usr/share/julia/Compiler/src/methodtable.jl:70 [inlined] #findall#7 at ./../usr/share/julia/Compiler/src/methodtable.jl:105 findall at ./../usr/share/julia/Compiler/src/methodtable.jl:102 [inlined] find_simple_method_matches at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:393 #find_method_matches#134 at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:348 jfptr_YY.find_method_matchesYY.134_85679.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_invoke at /source/src/gf.c:3497 tojlinvoke88656.1 at /opt/julia/lib/julia/sys.so (unknown line) j_YY.find_method_matchesYY.134_85677.1 at /opt/julia/lib/julia/sys.so (unknown line) find_method_matches at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:342 abstract_call_gf_by_type at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:120 abstract_call_known at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2802 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2909 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:2902 abstract_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3062 abstract_eval_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3080 abstract_eval_statement_expr at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3436 abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3825 [inlined] abstract_eval_basic_statement at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:3782 [inlined] typeinf_local at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4331 jfptr_typeinf_local_86787.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 typeinf at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:4489 const_prop_call at ./../usr/share/julia/Compiler/src/abstractinterpretation.jl:1354 PkgEval terminated after 2727.28s: test duration exceeded the time limit