Package evaluation of PhyloClustering on Julia 1.13.0-DEV.636 (2bd37fbbab*) started at 2025-05-26T05:18:25.271 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.1s ################################################################################ # Installation # Installing PhyloClustering... Resolving package versions... Installed Libuuid_jll ───────────────── v2.41.0+0 Installed libass_jll ────────────────── v0.15.2+0 Installed libaom_jll ────────────────── v3.11.0+0 Installed MosaicViews ───────────────── v0.3.4 Installed ImageIO ───────────────────── v0.6.9 Installed Formatting ────────────────── v0.4.3 Installed MultivariateStats ─────────── v0.10.3 Installed PolygonOps ────────────────── v0.1.2 Installed MKL_jll ───────────────────── v2025.0.1+1 Installed HarfBuzz_jll ──────────────── v8.5.0+0 Installed Libtiff_jll ───────────────── v4.7.1+0 Installed Bzip2_jll ─────────────────── v1.0.9+0 Installed InlineStrings ─────────────── v1.4.3 Installed Extents ───────────────────── v0.1.6 Installed NearestNeighbors ──────────── v0.4.21 Installed Cairo_jll ─────────────────── v1.18.4+0 Installed OrderedCollections ────────── v1.8.1 Installed Graphite2_jll ─────────────── v1.3.15+0 Installed Functors ──────────────────── v0.4.12 Installed Optim ─────────────────────── v1.12.0 Installed Giflib_jll ────────────────── v5.2.3+0 Installed SentinelArrays ────────────── v1.4.8 Installed Fontconfig_jll ────────────── v2.16.0+0 Installed UnsafeArrays ──────────────── v1.0.8 Installed Distances ─────────────────── v0.10.12 Installed FileIO ────────────────────── v1.17.0 Installed QuadGK ────────────────────── v2.11.2 Installed AbstractLattices ──────────── v0.3.1 Installed NaNMath ───────────────────── v1.1.3 Installed Graphics ──────────────────── v1.1.3 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed Opus_jll ──────────────────── v1.3.3+0 Installed Ogg_jll ───────────────────── v1.3.5+1 Installed Xorg_libxcb_jll ───────────── v1.17.1+0 Installed WoodburyMatrices ──────────── v1.0.0 Installed EnumX ─────────────────────── v1.0.5 Installed Arpack ────────────────────── v0.5.4 Installed Tables ────────────────────── v1.12.0 Installed SimplePolynomials ─────────── v0.2.18 Installed LZO_jll ───────────────────── v2.10.3+0 Installed Reexport ──────────────────── v1.2.2 Installed LERC_jll ──────────────────── v4.0.1+0 Installed Missings ──────────────────── v1.2.0 Installed Preferences ───────────────── v1.4.3 Installed LLVMOpenMP_jll ────────────── v18.1.8+0 Installed Imath_jll ─────────────────── v3.1.11+0 Installed MappedArrays ──────────────── v0.4.2 Installed TableTraits ───────────────── v1.0.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed NLSolversBase ─────────────── v7.9.1 Installed SortingAlgorithms ─────────── v1.2.1 Installed Grisu ─────────────────────── v1.0.2 Installed Crayons ───────────────────── v4.1.1 Installed RangeArrays ───────────────── v0.3.2 Installed Format ────────────────────── v1.3.7 Installed UnPack ────────────────────── v1.0.2 Installed CRlibm ────────────────────── v1.0.2 Installed Inflate ───────────────────── v0.1.5 Installed Polynomials ───────────────── v4.0.19 Installed DataStructures ────────────── v0.18.22 Installed Gettext_jll ───────────────── v0.21.0+0 Installed MacroTools ────────────────── v0.5.16 Installed DiffResults ───────────────── v1.1.0 Installed ColorBrewer ───────────────── v0.4.1 Installed FillArrays ────────────────── v1.13.0 Installed ADTypes ───────────────────── v1.14.0 Installed Packing ───────────────────── v0.5.1 Installed OpenEXR_jll ───────────────── v3.2.4+0 Installed AbstractTrees ─────────────── v0.4.5 Installed ParallelKMeans ────────────── v1.1.0 Installed LazyModules ───────────────── v0.3.1 Installed MakieCore ─────────────────── v0.7.3 Installed DelimitedFiles ────────────── v1.9.1 Installed oneTBB_jll ────────────────── v2022.0.0+0 Installed UnicodeFun ────────────────── v0.4.1 Installed CodecZlib ─────────────────── v0.7.8 Installed Cairo ─────────────────────── v1.1.1 Installed Observables ───────────────── v0.5.5 Installed StatsBase ─────────────────── v0.33.21 Installed Xorg_libXau_jll ───────────── v1.0.13+0 Installed x264_jll ──────────────────── v10164.0.1+0 Installed MathTeXEngine ─────────────── v0.5.7 Installed ArrayInterface ────────────── v7.19.0 Installed IntelOpenMP_jll ───────────── v2025.0.4+0 Installed CEnum ─────────────────────── v0.5.0 Installed DataValueInterfaces ───────── v1.0.0 Installed CairoMakie ────────────────── v0.11.9 Installed Libffi_jll ────────────────── v3.2.2+2 Installed Pixman_jll ────────────────── v0.44.2+0 Installed CommonSubexpressions ──────── v0.3.1 Installed Expat_jll ─────────────────── v2.6.5+0 Installed libpng_jll ────────────────── v1.6.48+0 Installed IrrationalConstants ───────── v0.2.4 Installed IntegerMathUtils ──────────── v0.1.2 Installed isoband_jll ───────────────── v0.2.3+0 Installed Contour ───────────────────── v0.6.3 Installed RoundingEmulator ──────────── v0.2.1 Installed Clustering ────────────────── v0.15.8 Installed ImageMetadata ─────────────── v0.9.10 Installed ColorVectorSpace ──────────── v0.10.0 Installed SimpleTraits ──────────────── v0.9.4 Installed Interpolations ────────────── v0.15.1 Installed libfdk_aac_jll ────────────── v2.0.3+0 Installed StableRNGs ────────────────── v1.0.3 Installed libsixel_jll ──────────────── v1.10.5+0 Installed Scratch ───────────────────── v1.2.1 Installed libwebp_jll ───────────────── v1.5.0+0 Installed Setfield ──────────────────── v1.1.2 Installed ShaderAbstractions ────────── v0.4.1 Installed PooledArrays ──────────────── v1.4.3 Installed CRlibm_jll ────────────────── v1.0.1+0 Installed PikaParser ────────────────── v0.6.1 Installed FFMPEG_jll ────────────────── v7.1.0+0 Installed PDMats ────────────────────── v0.11.35 Installed ImageCore ─────────────────── v0.10.5 Installed WeakKeyIdDicts ────────────── v0.1.0 Installed FASTX ─────────────────────── v2.1.7 Installed WorkerUtilities ───────────── v1.6.1 Installed AxisArrays ────────────────── v0.4.7 Installed DocStringExtensions ───────── v0.9.4 Installed PNGFiles ──────────────────── v0.4.4 Installed JpegTurbo ─────────────────── v0.1.6 Installed BioSequences ──────────────── v3.4.1 Installed ForwardDiff ───────────────── v1.0.1 Installed ColorSchemes ──────────────── v3.29.0 Installed StableHashTraits ──────────── v1.3.4 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed DifferentiationInterface ──── v0.6.54 Installed OpenBLASConsistentFPCSR_jll ─ v0.3.29+0 Installed FreeType ──────────────────── v4.1.1 Installed LightXML ──────────────────── v0.9.1 Installed PkgVersion ────────────────── v0.3.3 Installed RelocatableFolders ────────── v1.0.1 Installed StackViews ────────────────── v0.1.1 Installed KernelDensity ─────────────── v0.6.9 Installed StringViews ───────────────── v1.3.4 Installed StatsModels ───────────────── v0.7.4 Installed AliasTables ───────────────── v1.1.3 Installed Multisets ─────────────────── v0.4.5 Installed ShiftedArrays ─────────────── v2.0.0 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed SIMD ──────────────────────── v3.7.1 Installed Combinatorics ─────────────── v1.0.3 Installed RecipesBase ───────────────── v1.3.4 Installed DataAPI ───────────────────── v1.16.0 Installed Netpbm ────────────────────── v1.1.1 Installed InvertedIndices ───────────── v1.3.1 Installed GaussianMixtures ──────────── v0.3.13 Installed Twiddle ───────────────────── v1.1.2 Installed Colors ────────────────────── v0.12.11 Installed StaticArrays ──────────────── v1.9.13 Installed StaticArraysCore ──────────── v1.4.3 Installed ImageAxes ─────────────────── v0.6.12 Installed AbstractFFTs ──────────────── v1.5.0 Installed Mods ──────────────────────── v2.2.6 Installed Libglvnd_jll ──────────────── v1.7.1+1 Installed QOI ───────────────────────── v1.0.1 Installed AxisAlgorithms ────────────── v1.1.0 Installed ColorTypes ────────────────── v0.11.5 Installed StringManipulation ────────── v0.4.1 Installed Requires ──────────────────── v1.3.1 Installed Glib_jll ──────────────────── v2.82.4+0 Installed LogExpFunctions ───────────── v0.3.29 Installed SimplePartitions ──────────── v0.3.3 Installed DiffRules ─────────────────── v1.15.1 Installed PrettyTables ──────────────── v2.4.0 Installed JSON ──────────────────────── v0.21.4 Installed Distributions ─────────────── v0.25.120 Installed Arpack_jll ────────────────── v3.5.1+1 Installed FreeTypeAbstraction ───────── v0.10.6 Installed Parsers ───────────────────── v2.8.3 Installed FiniteDiff ────────────────── v2.27.0 Installed Rmath ─────────────────────── v0.8.0 Installed CSV ───────────────────────── v0.10.15 Installed FilePaths ─────────────────── v0.8.3 Installed GeoFormatTypes ────────────── v0.4.4 Installed StatsFuns ─────────────────── v1.5.0 Installed BioGenerics ───────────────── v0.1.5 Installed PhyloClustering ───────────── v0.2.0 Installed PhyloNetworks ─────────────── v0.16.4 Installed Xorg_libXdmcp_jll ─────────── v1.1.6+0 Installed OpenEXR ───────────────────── v0.3.3 Installed SignedDistanceFields ──────── v0.4.0 Installed WeakRefStrings ────────────── v1.4.2 Installed GridLayoutBase ────────────── v0.10.2 Installed JLLWrappers ───────────────── v1.7.0 Installed DataFrames ────────────────── v1.7.0 Installed XZ_jll ────────────────────── v5.8.1+0 Installed Primes ────────────────────── v0.5.7 Installed ExactPredicates ───────────── v2.2.8 Installed GeometryBasics ────────────── v0.4.11 Installed x265_jll ──────────────────── v4.1.0+0 Installed StructTypes ───────────────── v1.11.0 Installed Pango_jll ─────────────────── v1.56.1+0 Installed Xorg_xtrans_jll ───────────── v1.6.0+0 Installed NLopt ─────────────────────── v1.1.3 Installed StatisticalTraits ─────────── v3.4.0 Installed IterTools ─────────────────── v1.10.0 Installed FilePathsBase ─────────────── v0.9.24 Installed TiffImages ────────────────── v0.11.3 Installed JpegTurbo_jll ─────────────── v3.1.1+0 Installed GLM ───────────────────────── v1.9.0 Installed PaddedViews ───────────────── v0.5.12 Installed Adapt ─────────────────────── v4.3.0 Installed ConstructionBase ──────────── v1.5.8 Installed JLD2 ──────────────────────── v0.5.13 Installed TriplotBase ───────────────── v0.1.0 Installed Libmount_jll ──────────────── v2.41.0+0 Installed HypergeometricFunctions ───── v0.3.28 Installed TranscodingStreams ────────── v0.11.3 Installed Xorg_libX11_jll ───────────── v1.8.12+0 Installed Compat ────────────────────── v4.16.0 Installed Sixel ─────────────────────── v0.1.3 Installed EarCut_jll ────────────────── v2.2.4+0 Installed PlotUtils ─────────────────── v1.4.3 Installed TensorCore ────────────────── v0.1.1 Installed Statistics ────────────────── v1.11.1 Installed LinearAlgebraX ────────────── v0.2.10 Installed DelaunayTriangulation ─────── v0.8.12 Installed StatsAPI ──────────────────── v1.7.0 Installed ImageBase ─────────────────── v0.1.7 Installed RingLists ─────────────────── v0.2.9 Installed PositiveFactorizations ────── v0.2.4 Installed StructArrays ──────────────── v0.6.21 Installed PrecompileTools ───────────── v1.3.2 Installed OffsetArrays ──────────────── v1.17.0 Installed ProgressMeter ─────────────── v1.10.4 Installed WebP ──────────────────────── v0.1.3 Installed TupleTools ────────────────── v1.6.0 Installed BioSymbols ────────────────── v5.2.0 Installed ChainRulesCore ────────────── v1.25.1 Installed FriBidi_jll ───────────────── v1.0.17+0 Installed LAME_jll ──────────────────── v3.100.2+0 Installed Ratios ────────────────────── v0.4.5 Installed Xorg_libXrender_jll ───────── v0.9.12+0 Installed Animations ────────────────── v0.4.2 Installed Isoband ───────────────────── v0.1.1 Installed IntervalArithmetic ────────── v0.22.35 Installed libvorbis_jll ─────────────── v1.3.7+2 Installed Parameters ────────────────── v0.12.3 Installed PtrArrays ─────────────────── v1.3.0 Installed XML2_jll ──────────────────── v2.13.6+1 Installed SpecialFunctions ──────────── v2.5.1 Installed IntervalSets ──────────────── v0.7.11 Installed FixedPointNumbers ─────────── v0.8.5 Installed FreeType2_jll ─────────────── v2.13.4+0 Installed ScientificTypesBase ───────── v3.0.0 Installed Showoff ───────────────────── v1.0.3 Installed FFTW ──────────────────────── v1.8.1 Installed ScikitLearnBase ───────────── v0.5.0 Installed FFTW_jll ──────────────────── v3.3.11+0 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed Automa ────────────────────── v1.1.0 Installed IndirectArrays ────────────── v1.0.0 Installed GeoInterface ──────────────── v1.4.1 Installed Xorg_libXext_jll ──────────── v1.3.7+0 Installed LineSearches ──────────────── v7.3.0 Installed Permutations ──────────────── v0.4.23 Installed NLopt_jll ─────────────────── v2.10.0+0 Installed MLJModelInterface ─────────── v1.11.1 Installed SimpleRandom ──────────────── v0.3.2 Installed SimpleGraphs ──────────────── v0.8.6 Installed Makie ─────────────────────── v0.20.8 Installing 57 artifacts Installed artifact EarCut 80.5 KiB Installed artifact Libffi 34.1 KiB Installed artifact CRlibm 169.5 KiB Installed artifact LERC 272.9 KiB Installed artifact oneTBB 435.6 KiB Installed artifact Fontconfig 522.5 KiB Installed artifact XZ 1.5 MiB Installed artifact Libiconv 1.9 MiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact Ogg 257.2 KiB Installed artifact Libuuid 3.5 MiB Installed artifact Libtiff 3.2 MiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Expat 271.4 KiB Installed artifact isoband 25.7 KiB Installed artifact Pango 1.1 MiB Installed artifact Libglvnd 833.5 KiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact libwebp 2.6 MiB Installed artifact OpenBLASConsistentFPCSR 9.9 MiB Installed artifact libvorbis 271.0 KiB Installed artifact JpegTurbo 1.6 MiB Installed artifact HarfBuzz 1.7 MiB Installed artifact Imath 182.8 KiB Installed artifact XML2 2.5 MiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact Libmount 6.4 MiB Installed artifact Opus 908.1 KiB Installed artifact Xorg_libX11 13.9 MiB Installed artifact Arpack 147.2 KiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact FFMPEG 11.4 MiB Installed artifact Gettext 4.5 MiB Installed artifact Cairo 2.2 MiB Installed artifact x265 1.4 MiB Installed artifact FreeType2 1.5 MiB Installed artifact FriBidi 78.9 KiB Installed artifact LAME 292.5 KiB Installed artifact LZO 208.9 KiB Installed artifact Graphite2 120.2 KiB Installed artifact OpenEXR 1.9 MiB Installed artifact Giflib 154.6 KiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact Pixman 372.2 KiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact libass 372.4 KiB Installed artifact libpng 328.3 KiB Installed artifact Bzip2 503.5 KiB Installed artifact NLopt 322.7 KiB Installed artifact libfdk_aac 2.8 MiB Installed artifact Glib 7.6 MiB Installed artifact libsixel 177.3 KiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact FFTW 2.2 MiB Installed artifact Rmath 121.9 KiB Installed artifact libaom 6.4 MiB Installed artifact x264 2.1 MiB Updating `~/.julia/environments/v1.13/Project.toml` [2e4ec7c6] + PhyloClustering v0.2.0 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [621f4979] + AbstractFFTs v1.5.0 [398f06c4] + AbstractLattices v0.3.1 [1520ce14] + AbstractTrees v0.4.5 [79e6a3ab] + Adapt v4.3.0 [66dad0bd] + AliasTables v1.1.3 [27a7e980] + Animations v0.4.2 [7d9fca2a] + Arpack v0.5.4 [4fba245c] + ArrayInterface v7.19.0 [67c07d97] + Automa v1.1.0 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.7 [47718e42] + BioGenerics v0.1.5 [7e6ae17a] + BioSequences v3.4.1 [3c28c6f8] + BioSymbols v5.2.0 [fa961155] + CEnum v0.5.0 [96374032] + CRlibm v1.0.2 [336ed68f] + CSV v0.10.15 [159f3aea] + Cairo v1.1.1 ⌅ [13f3f980] + CairoMakie v0.11.9 [d360d2e6] + ChainRulesCore v1.25.1 [aaaa29a8] + Clustering v0.15.8 [944b1d66] + CodecZlib v0.7.8 [a2cac450] + ColorBrewer v0.4.1 [35d6a980] + ColorSchemes v3.29.0 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌃ [c3611d14] + ColorVectorSpace v0.10.0 ⌅ [5ae59095] + Colors v0.12.11 [861a8166] + Combinatorics v1.0.3 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [187b0558] + ConstructionBase v1.5.8 [d38c429a] + Contour v0.6.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 ⌅ [927a84f5] + DelaunayTriangulation v0.8.12 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 ⌅ [a0c0ee7d] + DifferentiationInterface v0.6.54 [b4f34e82] + Distances v0.10.12 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.4 [4e289a0a] + EnumX v1.0.5 [429591f6] + ExactPredicates v2.2.8 [411431e0] + Extents v0.1.6 [c2308a5c] + FASTX v2.1.7 [7a1cc6ca] + FFTW v1.8.1 [5789e2e9] + FileIO v1.17.0 ⌅ [8fc22ac5] + FilePaths v0.8.3 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 [59287772] + Formatting v0.4.3 [f6369f11] + ForwardDiff v1.0.1 [b38be410] + FreeType v4.1.1 [663a7486] + FreeTypeAbstraction v0.10.6 ⌅ [d9f16b24] + Functors v0.4.12 [38e38edf] + GLM v1.9.0 [cc18c42c] + GaussianMixtures v0.3.13 [68eda718] + GeoFormatTypes v0.4.4 [cf35fbd7] + GeoInterface v1.4.1 ⌅ [5c1252a2] + GeometryBasics v0.4.11 [a2bd30eb] + Graphics v1.1.3 ⌅ [3955a311] + GridLayoutBase v0.10.2 [42e2da0e] + Grisu v1.0.2 [34004b35] + HypergeometricFunctions v0.3.28 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [82e4d734] + ImageIO v0.6.9 [bc367c6b] + ImageMetadata v0.9.10 [9b13fd28] + IndirectArrays v1.0.0 [d25df0c9] + Inflate v0.1.5 [842dd82b] + InlineStrings v1.4.3 [18e54dd8] + IntegerMathUtils v0.1.2 ⌅ [a98d9a8b] + Interpolations v0.15.1 [d1acc4aa] + IntervalArithmetic v0.22.35 [8197267c] + IntervalSets v0.7.11 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [f1662d9f] + Isoband v0.1.1 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 [033835bb] + JLD2 v0.5.13 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [b835a17e] + JpegTurbo v0.1.6 [5ab0869b] + KernelDensity v0.6.9 [b964fa9f] + 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ParallelKMeans v1.1.0 [d96e819e] + Parameters v0.12.3 [69de0a69] + Parsers v2.8.3 [2ae35dd2] + Permutations v0.4.23 [2e4ec7c6] + PhyloClustering v0.2.0 ⌅ [33ad39ac] + PhyloNetworks v0.16.4 [3bbf5609] + PikaParser v0.6.1 [eebad327] + PkgVersion v0.3.3 [995b91a9] + PlotUtils v1.4.3 [647866c9] + PolygonOps v0.1.2 [f27b6e38] + Polynomials v4.0.19 [2dfb63ee] + PooledArrays v1.4.3 [85a6dd25] + PositiveFactorizations v0.2.4 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [27ebfcd6] + Primes v0.5.7 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [4b34888f] + QOI v1.0.1 [1fd47b50] + QuadGK v2.11.2 [b3c3ace0] + RangeArrays v0.3.2 [c84ed2f1] + Ratios v0.4.5 [3cdcf5f2] + RecipesBase v1.3.4 [189a3867] + Reexport v1.2.2 [05181044] + RelocatableFolders v1.0.1 [ae029012] + Requires v1.3.1 [286e9d63] + RingLists v0.2.9 [79098fc4] + Rmath v0.8.0 [5eaf0fd0] + RoundingEmulator v0.2.1 [fdea26ae] + SIMD v3.7.1 [30f210dd] + 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JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.12.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.0+0 [efcefdf7] + PCRE2_jll v10.44.0+1 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 43.35s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4387.4 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 25 already precompiled. Precompiling package dependencies... ERROR: LoadError: The following 3 direct dependencies failed to precompile: PhyloNetworks Failed to precompile PhyloNetworks [33ad39ac-ed31-50eb-9b15-43d0656eaa72] to "/home/pkgeval/.julia/compiled/v1.13/PhyloNetworks/jl_F7l8qN" (ProcessExited(1)). ERROR: LoadError: syntax: misplaced "global" declaration Stacktrace: [1] top-level scope @ ~/.julia/packages/NLopt/6hGun/src/NLopt.jl:850 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3000 [4] top-level scope @ stdin:5 [5] eval(m::Module, e::Any) @ Core ./boot.jl:489 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [7] include_string @ ./loading.jl:2856 [inlined] [8] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [9] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/NLopt/6hGun/src/NLopt.jl:6 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile NLopt [76087f3c-5699-56af-9a33-bf431cd00edd] to "/home/pkgeval/.julia/compiled/v1.13/NLopt/jl_E7Oq1g" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3287 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#232 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3858 [11] maybe_cachefile_lock @ ./loading.jl:3855 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [14] macro expansion @ ./loading.jl:2394 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [17] require @ ./loading.jl:2335 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [21] top-level scope @ ~/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:28 [22] include(mod::Module, _path::String) @ Base ./Base.jl:309 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3000 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [27] include_string @ ./loading.jl:2856 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [29] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:3 in expression starting at stdin:5 CairoMakie Failed to precompile CairoMakie [13f3f980-e62b-5c42-98c6-ff1f3baf88f0] to "/home/pkgeval/.julia/compiled/v1.13/CairoMakie/jl_ffYNcF" (ProcessExited(1)). ERROR: LoadError: MethodError: no method matching GeometryBasics.Polygon(::Vector{GeometryBasics.Point{2, Float32}}, ::Vector{Any}) The type `GeometryBasics.Polygon` exists, but no method is defined for this combination of argument types when trying to construct it. Closest candidates are: GeometryBasics.Polygon(::AbstractVector{P}, !Matched::Int64) where {Dim, T, P<:GeometryBasics.AbstractPoint{Dim, T}} @ GeometryBasics ~/.julia/packages/GeometryBasics/ebXl0/src/basic_types.jl:273 GeometryBasics.Polygon(::AbstractVector{P}, !Matched::AbstractVector{<:Integer}, !Matched::Int64) where {Dim, T, P<:GeometryBasics.AbstractPoint{Dim, T}} @ GeometryBasics ~/.julia/packages/GeometryBasics/ebXl0/src/basic_types.jl:278 GeometryBasics.Polygon(::AbstractVector{P}, !Matched::AbstractVector{<:GeometryBasics.LineFace}) where {Dim, T, P<:GeometryBasics.AbstractPoint{Dim, T}} @ GeometryBasics ~/.julia/packages/GeometryBasics/ebXl0/src/basic_types.jl:283 ... Stacktrace: [1] project_polygon(scenelike::Any, space::Symbol, poly::GeometryBasics.Polygon{2, Float32, GeometryBasics.Point{2, Float32}, GeometryBasics.LineString{2, Float32, GeometryBasics.Point{2, Float32}, Base.ReinterpretArray{GeometryBasics.Line{2, Float32}, 1, Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, GeometryBasics.TupleView{Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, 2, 1, Vector{GeometryBasics.Point{2, Float32}}}, false}}, Vector{GeometryBasics.LineString{2, Float32, GeometryBasics.Point{2, Float32}, Base.ReinterpretArray{GeometryBasics.Line{2, Float32}, 1, Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, GeometryBasics.TupleView{Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, 2, 1, Vector{GeometryBasics.Point{2, Float32}}}, false}}}}, model::StaticArraysCore.SMatrix{4, 4, Float32, 16}) @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/utils.jl:59 [2] _broadcast_getindex_evalf @ ./broadcast.jl:701 [inlined] [3] _broadcast_getindex @ ./broadcast.jl:674 [inlined] [4] _getindex @ ./broadcast.jl:622 [inlined] [5] getindex @ ./broadcast.jl:618 [inlined] [6] copy @ ./broadcast.jl:935 [inlined] [7] materialize(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Nothing, typeof(CairoMakie.project_polygon), Tuple{Base.RefValue{MakieCore.Poly{Tuple{Vector{GeometryBasics.Polygon{2, Float32, GeometryBasics.Point{2, Float32}, GeometryBasics.LineString{2, Float32, GeometryBasics.Point{2, Float32}, Base.ReinterpretArray{GeometryBasics.Line{2, Float32}, 1, Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, GeometryBasics.TupleView{Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, 2, 1, Vector{GeometryBasics.Point{2, Float32}}}, false}}, Vector{GeometryBasics.LineString{2, Float32, GeometryBasics.Point{2, Float32}, Base.ReinterpretArray{GeometryBasics.Line{2, Float32}, 1, Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, GeometryBasics.TupleView{Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, 2, 1, Vector{GeometryBasics.Point{2, Float32}}}, false}}}}}}}}, Base.RefValue{Symbol}, Vector{GeometryBasics.Polygon{2, Float32, GeometryBasics.Point{2, Float32}, GeometryBasics.LineString{2, Float32, GeometryBasics.Point{2, Float32}, Base.ReinterpretArray{GeometryBasics.Line{2, Float32}, 1, Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, GeometryBasics.TupleView{Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, 2, 1, Vector{GeometryBasics.Point{2, Float32}}}, false}}, Vector{GeometryBasics.LineString{2, Float32, GeometryBasics.Point{2, Float32}, Base.ReinterpretArray{GeometryBasics.Line{2, Float32}, 1, Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, GeometryBasics.TupleView{Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, 2, 1, Vector{GeometryBasics.Point{2, Float32}}}, false}}}}}, Base.RefValue{StaticArraysCore.SMatrix{4, 4, Float32, 16}}}}) @ Base.Broadcast ./broadcast.jl:896 [8] draw_poly(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, poly::MakieCore.Poly{Tuple{Vector{GeometryBasics.Polygon{2, Float32, GeometryBasics.Point{2, Float32}, GeometryBasics.LineString{2, Float32, GeometryBasics.Point{2, Float32}, Base.ReinterpretArray{GeometryBasics.Line{2, Float32}, 1, Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, GeometryBasics.TupleView{Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, 2, 1, Vector{GeometryBasics.Point{2, Float32}}}, false}}, Vector{GeometryBasics.LineString{2, Float32, GeometryBasics.Point{2, Float32}, Base.ReinterpretArray{GeometryBasics.Line{2, Float32}, 1, Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, GeometryBasics.TupleView{Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, 2, 1, Vector{GeometryBasics.Point{2, Float32}}}, false}}}}}}}, polygons::Vector{GeometryBasics.Polygon{2, Float32, GeometryBasics.Point{2, Float32}, GeometryBasics.LineString{2, Float32, GeometryBasics.Point{2, Float32}, Base.ReinterpretArray{GeometryBasics.Line{2, Float32}, 1, Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, GeometryBasics.TupleView{Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, 2, 1, Vector{GeometryBasics.Point{2, Float32}}}, false}}, Vector{GeometryBasics.LineString{2, Float32, GeometryBasics.Point{2, Float32}, Base.ReinterpretArray{GeometryBasics.Line{2, Float32}, 1, Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, GeometryBasics.TupleView{Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, 2, 1, Vector{GeometryBasics.Point{2, Float32}}}, false}}}}}) @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/overrides.jl:166 [9] draw_plot(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, poly::MakieCore.Poly{Tuple{Vector{GeometryBasics.Polygon{2, Float32, GeometryBasics.Point{2, Float32}, GeometryBasics.LineString{2, Float32, GeometryBasics.Point{2, Float32}, Base.ReinterpretArray{GeometryBasics.Line{2, Float32}, 1, Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, GeometryBasics.TupleView{Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, 2, 1, Vector{GeometryBasics.Point{2, Float32}}}, false}}, Vector{GeometryBasics.LineString{2, Float32, GeometryBasics.Point{2, Float32}, Base.ReinterpretArray{GeometryBasics.Line{2, Float32}, 1, Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, GeometryBasics.TupleView{Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, 2, 1, Vector{GeometryBasics.Point{2, Float32}}}, false}}}}}}}) @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/overrides.jl:17 [10] cairo_draw(screen::CairoMakie.Screen{CairoMakie.IMAGE}, scene::Makie.Scene) @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:51 [11] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE}) @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/screen.jl:311 [12] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE}, format::Makie.ImageStorageFormat) @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:382 [13] colorbuffer(fig::Makie.FigureAxisPlot, format::Makie.ImageStorageFormat; update::Bool, backend::Module, screen_config::@Kwargs{}) @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:466 [14] colorbuffer @ ~/.julia/packages/Makie/VRavR/src/display.jl:457 [inlined] [15] colorbuffer(fig::Makie.FigureAxisPlot) @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:457 [16] top-level scope @ ~/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:6 [17] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [18] top-level scope @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:11 [19] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [20] macro expansion @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:15 [inlined] [21] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [22] top-level scope @ ~/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:36 [23] include(mod::Module, _path::String) @ Base ./Base.jl:309 [24] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3000 [25] top-level scope @ stdin:5 [26] eval(m::Module, e::Any) @ Core ./boot.jl:489 [27] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [28] include_string @ ./loading.jl:2856 [inlined] [29] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [30] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:77 in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:10 in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:1 in expression starting at stdin:5 PhyloClustering Failed to precompile PhyloClustering [2e4ec7c6-185f-4bfd-8419-ce336ea983f6] to "/home/pkgeval/.julia/compiled/v1.13/PhyloClustering/jl_hFUAKV" (ProcessExited(1)). ERROR: LoadError: syntax: misplaced "global" declaration Stacktrace: [1] top-level scope @ ~/.julia/packages/NLopt/6hGun/src/NLopt.jl:850 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3000 [4] top-level scope @ stdin:5 [5] eval(m::Module, e::Any) @ Core ./boot.jl:489 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [7] include_string @ ./loading.jl:2856 [inlined] [8] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [9] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/NLopt/6hGun/src/NLopt.jl:6 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile NLopt [76087f3c-5699-56af-9a33-bf431cd00edd] to "/home/pkgeval/.julia/compiled/v1.13/NLopt/jl_iQXctn" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3287 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#232 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3858 [11] maybe_cachefile_lock @ ./loading.jl:3855 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [14] macro expansion @ ./loading.jl:2394 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [17] require @ ./loading.jl:2335 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [21] top-level scope @ ~/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:28 [22] include(mod::Module, _path::String) @ Base ./Base.jl:309 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3000 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [27] include_string @ ./loading.jl:2856 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [29] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:3 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile PhyloNetworks [33ad39ac-ed31-50eb-9b15-43d0656eaa72] to "/home/pkgeval/.julia/compiled/v1.13/PhyloNetworks/jl_WKglQH" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3287 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#232 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3858 [11] maybe_cachefile_lock @ ./loading.jl:3855 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [14] macro expansion @ ./loading.jl:2394 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [17] require @ ./loading.jl:2335 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [21] top-level scope @ ~/.julia/packages/PhyloClustering/7nfrG/src/bipartition.jl:1 [22] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [23] top-level scope @ ~/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:4 [24] include(mod::Module, _path::String) @ Base ./Base.jl:309 [25] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3000 [26] top-level scope @ stdin:5 [27] eval(m::Module, e::Any) @ Core ./boot.jl:489 [28] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [29] include_string @ ./loading.jl:2856 [inlined] [30] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [31] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/bipartition.jl:1 in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:3 in expression starting at stdin:5 in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 1630.93s ################################################################################ # Testing # Testing PhyloClustering Status `/tmp/jl_Yap4bN/Project.toml` ⌅ [13f3f980] CairoMakie v0.11.9 [aaaa29a8] Clustering v0.15.8 [861a8166] Combinatorics v1.0.3 [b4f34e82] Distances v0.10.12 [59287772] Formatting v0.4.3 [cc18c42c] GaussianMixtures v0.3.13 [6f286f6a] MultivariateStats v0.10.3 [42b8e9d4] ParallelKMeans v1.1.0 [2e4ec7c6] PhyloClustering v0.2.0 ⌅ [33ad39ac] PhyloNetworks v0.16.4 [295af30f] Revise v3.7.6 [860ef19b] StableRNGs v1.0.3 ⌅ [2913bbd2] StatsBase v0.33.21 [fd094767] Suppressor v0.2.8 [9a3f8284] Random v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_Yap4bN/Manifest.toml` [47edcb42] ADTypes v1.14.0 [621f4979] AbstractFFTs v1.5.0 [398f06c4] AbstractLattices v0.3.1 [1520ce14] AbstractTrees v0.4.5 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [27a7e980] Animations v0.4.2 [7d9fca2a] Arpack v0.5.4 [4fba245c] ArrayInterface v7.19.0 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.7 [47718e42] BioGenerics v0.1.5 [7e6ae17a] BioSequences v3.4.1 [3c28c6f8] BioSymbols v5.2.0 [fa961155] CEnum v0.5.0 [96374032] CRlibm v1.0.2 [336ed68f] CSV v0.10.15 [159f3aea] Cairo v1.1.1 ⌅ [13f3f980] CairoMakie v0.11.9 [d360d2e6] ChainRulesCore v1.25.1 [aaaa29a8] Clustering v0.15.8 [da1fd8a2] CodeTracking v1.3.9 [944b1d66] CodecZlib v0.7.8 [a2cac450] ColorBrewer v0.4.1 [35d6a980] ColorSchemes v3.29.0 ⌅ [3da002f7] ColorTypes v0.11.5 ⌃ [c3611d14] ColorVectorSpace v0.10.0 ⌅ [5ae59095] Colors v0.12.11 [861a8166] Combinatorics v1.0.3 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [187b0558] ConstructionBase v1.5.8 [d38c429a] Contour v0.6.3 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 ⌅ [927a84f5] DelaunayTriangulation v0.8.12 [8bb1440f] DelimitedFiles v1.9.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 ⌅ [a0c0ee7d] DifferentiationInterface v0.6.54 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.4 [4e289a0a] EnumX v1.0.5 [429591f6] ExactPredicates v2.2.8 [411431e0] Extents v0.1.6 [c2308a5c] FASTX v2.1.7 [7a1cc6ca] FFTW v1.8.1 [5789e2e9] FileIO v1.17.0 ⌅ [8fc22ac5] FilePaths v0.8.3 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 [59287772] Formatting v0.4.3 [f6369f11] ForwardDiff v1.0.1 [b38be410] FreeType v4.1.1 [663a7486] FreeTypeAbstraction v0.10.6 ⌅ [d9f16b24] Functors v0.4.12 [38e38edf] GLM v1.9.0 [cc18c42c] GaussianMixtures v0.3.13 [68eda718] GeoFormatTypes v0.4.4 [cf35fbd7] GeoInterface v1.4.1 ⌅ [5c1252a2] GeometryBasics v0.4.11 [a2bd30eb] Graphics v1.1.3 ⌅ [3955a311] GridLayoutBase v0.10.2 [42e2da0e] Grisu v1.0.2 [34004b35] HypergeometricFunctions v0.3.28 [2803e5a7] ImageAxes v0.6.12 [c817782e] ImageBase v0.1.7 [a09fc81d] ImageCore v0.10.5 [82e4d734] ImageIO v0.6.9 [bc367c6b] ImageMetadata v0.9.10 [9b13fd28] IndirectArrays v1.0.0 [d25df0c9] Inflate v0.1.5 [842dd82b] InlineStrings v1.4.3 [18e54dd8] IntegerMathUtils v0.1.2 ⌅ [a98d9a8b] Interpolations v0.15.1 [d1acc4aa] IntervalArithmetic v0.22.35 [8197267c] IntervalSets v0.7.11 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [f1662d9f] Isoband v0.1.1 [c8e1da08] IterTools v1.10.0 [82899510] IteratorInterfaceExtensions v1.0.0 [033835bb] JLD2 v0.5.13 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [b835a17e] JpegTurbo v0.1.6 [aa1ae85d] JuliaInterpreter v0.10.3 [5ab0869b] KernelDensity v0.6.9 [b964fa9f] LaTeXStrings v1.4.0 [8cdb02fc] LazyModules v0.3.1 [9c8b4983] LightXML v0.9.1 [d3d80556] LineSearches v7.3.0 [9b3f67b0] LinearAlgebraX v0.2.10 [2ab3a3ac] LogExpFunctions v0.3.29 [6f1432cf] LoweredCodeUtils v3.3.0 [e80e1ace] MLJModelInterface v1.11.1 [1914dd2f] MacroTools v0.5.16 ⌅ [ee78f7c6] Makie v0.20.8 ⌅ [20f20a25] MakieCore v0.7.3 [dbb5928d] MappedArrays v0.4.2 ⌅ [0a4f8689] MathTeXEngine v0.5.7 [e1d29d7a] Missings v1.2.0 [7475f97c] Mods v2.2.6 [e94cdb99] MosaicViews v0.3.4 [3b2b4ff1] Multisets v0.4.5 [6f286f6a] MultivariateStats v0.10.3 [d41bc354] NLSolversBase v7.9.1 [76087f3c] NLopt v1.1.3 [77ba4419] NaNMath v1.1.3 [b8a86587] NearestNeighbors v0.4.21 [f09324ee] Netpbm v1.1.1 [510215fc] Observables v0.5.5 [6fe1bfb0] OffsetArrays v1.17.0 [52e1d378] OpenEXR v0.3.3 [429524aa] Optim v1.12.0 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [f57f5aa1] PNGFiles v0.4.4 [19eb6ba3] Packing v0.5.1 [5432bcbf] PaddedViews v0.5.12 [42b8e9d4] ParallelKMeans v1.1.0 [d96e819e] Parameters v0.12.3 [69de0a69] Parsers v2.8.3 [2ae35dd2] Permutations v0.4.23 [2e4ec7c6] PhyloClustering v0.2.0 ⌅ [33ad39ac] PhyloNetworks v0.16.4 [3bbf5609] PikaParser v0.6.1 [eebad327] PkgVersion v0.3.3 [995b91a9] PlotUtils v1.4.3 [647866c9] PolygonOps v0.1.2 [f27b6e38] Polynomials v4.0.19 [2dfb63ee] PooledArrays v1.4.3 [85a6dd25] PositiveFactorizations v0.2.4 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [27ebfcd6] Primes v0.5.7 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [4b34888f] QOI v1.0.1 [1fd47b50] QuadGK v2.11.2 [b3c3ace0] RangeArrays v0.3.2 [c84ed2f1] Ratios v0.4.5 [3cdcf5f2] RecipesBase v1.3.4 [189a3867] Reexport v1.2.2 [05181044] RelocatableFolders v1.0.1 [ae029012] Requires v1.3.1 [295af30f] Revise v3.7.6 [286e9d63] RingLists v0.2.9 [79098fc4] Rmath v0.8.0 [5eaf0fd0] RoundingEmulator v0.2.1 [fdea26ae] SIMD v3.7.1 [30f210dd] ScientificTypesBase v3.0.0 [6e75b9c4] ScikitLearnBase v0.5.0 [6c6a2e73] Scratch v1.2.1 [91c51154] SentinelArrays v1.4.8 [efcf1570] Setfield v1.1.2 ⌅ [65257c39] ShaderAbstractions v0.4.1 [1277b4bf] 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... ✗ NLopt ✗ CairoMakie ✗ PhyloNetworks Info Given PhyloClustering was explicitly requested, output will be shown live  ERROR: LoadError: syntax: misplaced "global" declaration Stacktrace:  [1] top-level scope  @ ~/.julia/packages/NLopt/6hGun/src/NLopt.jl:850  [2] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)  @ Base ./loading.jl:3000  [4] top-level scope  @ stdin:5  [5] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2846  [7] include_string  @ ./loading.jl:2856 [inlined]  [8] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:329  [9] _start()  @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/NLopt/6hGun/src/NLopt.jl:6 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile NLopt [76087f3c-5699-56af-9a33-bf431cd00edd] to "/home/pkgeval/.julia/compiled/v1.13/NLopt/jl_Dc2Xxl" (ProcessExited(1)). Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)  @ Base ./loading.jl:3287  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()  @ Base ./loading.jl:2652  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93  [5] #mkpidlock#7  @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})  @ Base ./reflection.jl:1279  [8] #invokelatest_gr#232  @ ./reflection.jl:1287 [inlined]  [9] invokelatest_gr  @ ./reflection.jl:1281 [inlined]  [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)  @ Base ./loading.jl:3858  [11] maybe_cachefile_lock  @ ./loading.jl:3855 [inlined]  [12] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2638  [13] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2466  [14] macro expansion  @ ./loading.jl:2394 [inlined]  [15] macro expansion  @ ./lock.jl:376 [inlined]  [16] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2359  [17] require  @ ./loading.jl:2335 [inlined]  [18] eval_import_path  @ ./module.jl:36 [inlined]  [19] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [20] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [21] top-level scope  @ ~/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:28  [22] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)  @ Base ./loading.jl:3000  [24] top-level scope  @ stdin:5  [25] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2846  [27] include_string  @ ./loading.jl:2856 [inlined]  [28] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:329  [29] _start()  @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:3 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile PhyloNetworks [33ad39ac-ed31-50eb-9b15-43d0656eaa72] to "/home/pkgeval/.julia/compiled/v1.13/PhyloNetworks/jl_4dDF9g" (ProcessExited(1)). Stacktrace:  [1] error(s::String)  @ Base ./error.jl:44  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)  @ Base ./loading.jl:3287  [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})()  @ Base ./loading.jl:2652  [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93  [5] #mkpidlock#7  @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined]  [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64})  @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114  [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any})  @ Base ./reflection.jl:1279  [8] #invokelatest_gr#232  @ ./reflection.jl:1287 [inlined]  [9] invokelatest_gr  @ ./reflection.jl:1281 [inlined]  [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)  @ Base ./loading.jl:3858  [11] maybe_cachefile_lock  @ ./loading.jl:3855 [inlined]  [12] __require_prelocked(pkg::Base.PkgId, env::String)  @ Base ./loading.jl:2638  [13] _require_prelocked(uuidkey::Base.PkgId, env::String)  @ Base ./loading.jl:2466  [14] macro expansion  @ ./loading.jl:2394 [inlined]  [15] macro expansion  @ ./lock.jl:376 [inlined]  [16] __require(into::Module, mod::Symbol)  @ Base ./loading.jl:2359  [17] require  @ ./loading.jl:2335 [inlined]  [18] eval_import_path  @ ./module.jl:36 [inlined]  [19] eval_import_path_all(at::Module, path::Expr, keyword::String)  @ Base ./module.jl:60  [20] _eval_using(to::Module, path::Expr)  @ Base ./module.jl:137  [21] top-level scope  @ ~/.julia/packages/PhyloClustering/7nfrG/src/bipartition.jl:1  [22] include(mapexpr::Function, mod::Module, _path::String)  @ Base ./Base.jl:310  [23] top-level scope  @ ~/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:4  [24] include(mod::Module, _path::String)  @ Base ./Base.jl:309  [25] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)  @ Base ./loading.jl:3000  [26] top-level scope  @ stdin:5  [27] eval(m::Module, e::Any)  @ Core ./boot.jl:489  [28] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String)  @ Base ./loading.jl:2846  [29] include_string  @ ./loading.jl:2856 [inlined]  [30] exec_options(opts::Base.JLOptions)  @ Base ./client.jl:329  [31] _start()  @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/bipartition.jl:1 in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:3 in expression starting at stdin:5 ✗ PhyloClustering 0 dependencies successfully precompiled in 193 seconds. 360 already precompiled. ERROR: LoadError: The following 3 direct dependencies failed to precompile: PhyloNetworks Failed to precompile PhyloNetworks [33ad39ac-ed31-50eb-9b15-43d0656eaa72] to "/home/pkgeval/.julia/compiled/v1.13/PhyloNetworks/jl_oy9UVZ" (ProcessExited(1)). ERROR: LoadError: syntax: misplaced "global" declaration Stacktrace: [1] top-level scope @ ~/.julia/packages/NLopt/6hGun/src/NLopt.jl:850 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3000 [4] top-level scope @ stdin:5 [5] eval(m::Module, e::Any) @ Core ./boot.jl:489 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [7] include_string @ ./loading.jl:2856 [inlined] [8] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [9] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/NLopt/6hGun/src/NLopt.jl:6 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile NLopt [76087f3c-5699-56af-9a33-bf431cd00edd] to "/home/pkgeval/.julia/compiled/v1.13/NLopt/jl_sgO60a" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3287 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#232 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3858 [11] maybe_cachefile_lock @ ./loading.jl:3855 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [14] macro expansion @ ./loading.jl:2394 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [17] require @ ./loading.jl:2335 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [21] top-level scope @ ~/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:28 [22] include(mod::Module, _path::String) @ Base ./Base.jl:309 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3000 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [27] include_string @ ./loading.jl:2856 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [29] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:3 in expression starting at stdin:5 CairoMakie Failed to precompile CairoMakie [13f3f980-e62b-5c42-98c6-ff1f3baf88f0] to "/home/pkgeval/.julia/compiled/v1.13/CairoMakie/jl_R2CYZf" (ProcessExited(1)). WARNING: importing deprecated binding Makie.Combined into CairoMakie. , use Plot instead. WARNING: importing deprecated binding Makie.ContinuousSurface into CairoMakie. , use VertexGrid instead. WARNING: importing deprecated binding Makie.DiscreteSurface into CairoMakie. , use CellGrid instead. ERROR: LoadError: MethodError: no method matching GeometryBasics.Polygon(::Vector{GeometryBasics.Point{2, Float32}}, ::Vector{Any}) The type `GeometryBasics.Polygon` exists, but no method is defined for this combination of argument types when trying to construct it. Closest candidates are: GeometryBasics.Polygon(::AbstractVector{P}, !Matched::Int64) where {Dim, T, P<:GeometryBasics.AbstractPoint{Dim, T}} @ GeometryBasics ~/.julia/packages/GeometryBasics/ebXl0/src/basic_types.jl:273 GeometryBasics.Polygon(::AbstractVector{P}, !Matched::AbstractVector{<:Integer}, !Matched::Int64) where {Dim, T, P<:GeometryBasics.AbstractPoint{Dim, T}} @ GeometryBasics ~/.julia/packages/GeometryBasics/ebXl0/src/basic_types.jl:278 GeometryBasics.Polygon(::AbstractVector{P}, !Matched::AbstractVector{<:GeometryBasics.LineFace}) where {Dim, T, P<:GeometryBasics.AbstractPoint{Dim, T}} @ GeometryBasics ~/.julia/packages/GeometryBasics/ebXl0/src/basic_types.jl:283 ... Stacktrace: [1] project_polygon(scenelike::Any, space::Symbol, poly::GeometryBasics.Polygon{2, Float32, GeometryBasics.Point{2, Float32}, GeometryBasics.LineString{2, Float32, GeometryBasics.Point{2, Float32}, Base.ReinterpretArray{GeometryBasics.Line{2, Float32}, 1, Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, GeometryBasics.TupleView{Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, 2, 1, Vector{GeometryBasics.Point{2, Float32}}}, false}}, Vector{GeometryBasics.LineString{2, Float32, GeometryBasics.Point{2, Float32}, Base.ReinterpretArray{GeometryBasics.Line{2, Float32}, 1, Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, GeometryBasics.TupleView{Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, 2, 1, Vector{GeometryBasics.Point{2, Float32}}}, false}}}}, model::StaticArraysCore.SMatrix{4, 4, Float32, 16}) @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/utils.jl:59 [2] _broadcast_getindex_evalf @ ./broadcast.jl:701 [inlined] [3] _broadcast_getindex @ ./broadcast.jl:674 [inlined] [4] _getindex @ ./broadcast.jl:622 [inlined] [5] getindex @ ./broadcast.jl:618 [inlined] [6] copy @ ./broadcast.jl:935 [inlined] [7] materialize(bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{1}, Nothing, typeof(CairoMakie.project_polygon), Tuple{Base.RefValue{MakieCore.Poly{Tuple{Vector{GeometryBasics.Polygon{2, Float32, GeometryBasics.Point{2, Float32}, GeometryBasics.LineString{2, Float32, GeometryBasics.Point{2, Float32}, Base.ReinterpretArray{GeometryBasics.Line{2, Float32}, 1, Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, GeometryBasics.TupleView{Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, 2, 1, Vector{GeometryBasics.Point{2, Float32}}}, false}}, Vector{GeometryBasics.LineString{2, Float32, GeometryBasics.Point{2, Float32}, Base.ReinterpretArray{GeometryBasics.Line{2, Float32}, 1, Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, GeometryBasics.TupleView{Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, 2, 1, Vector{GeometryBasics.Point{2, Float32}}}, false}}}}}}}}, Base.RefValue{Symbol}, Vector{GeometryBasics.Polygon{2, Float32, GeometryBasics.Point{2, Float32}, GeometryBasics.LineString{2, Float32, GeometryBasics.Point{2, Float32}, Base.ReinterpretArray{GeometryBasics.Line{2, Float32}, 1, Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, GeometryBasics.TupleView{Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, 2, 1, Vector{GeometryBasics.Point{2, Float32}}}, false}}, Vector{GeometryBasics.LineString{2, Float32, GeometryBasics.Point{2, Float32}, Base.ReinterpretArray{GeometryBasics.Line{2, Float32}, 1, Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, GeometryBasics.TupleView{Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, 2, 1, Vector{GeometryBasics.Point{2, Float32}}}, false}}}}}, Base.RefValue{StaticArraysCore.SMatrix{4, 4, Float32, 16}}}}) @ Base.Broadcast ./broadcast.jl:896 [8] draw_poly(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, poly::MakieCore.Poly{Tuple{Vector{GeometryBasics.Polygon{2, Float32, GeometryBasics.Point{2, Float32}, GeometryBasics.LineString{2, Float32, GeometryBasics.Point{2, Float32}, Base.ReinterpretArray{GeometryBasics.Line{2, Float32}, 1, Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, GeometryBasics.TupleView{Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, 2, 1, Vector{GeometryBasics.Point{2, Float32}}}, false}}, Vector{GeometryBasics.LineString{2, Float32, GeometryBasics.Point{2, Float32}, Base.ReinterpretArray{GeometryBasics.Line{2, Float32}, 1, Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, GeometryBasics.TupleView{Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, 2, 1, Vector{GeometryBasics.Point{2, Float32}}}, false}}}}}}}, polygons::Vector{GeometryBasics.Polygon{2, Float32, GeometryBasics.Point{2, Float32}, GeometryBasics.LineString{2, Float32, GeometryBasics.Point{2, Float32}, Base.ReinterpretArray{GeometryBasics.Line{2, Float32}, 1, Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, GeometryBasics.TupleView{Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, 2, 1, Vector{GeometryBasics.Point{2, Float32}}}, false}}, Vector{GeometryBasics.LineString{2, Float32, GeometryBasics.Point{2, Float32}, Base.ReinterpretArray{GeometryBasics.Line{2, Float32}, 1, Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, GeometryBasics.TupleView{Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, 2, 1, Vector{GeometryBasics.Point{2, Float32}}}, false}}}}}) @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/overrides.jl:166 [9] draw_plot(scene::Makie.Scene, screen::CairoMakie.Screen{CairoMakie.IMAGE}, poly::MakieCore.Poly{Tuple{Vector{GeometryBasics.Polygon{2, Float32, GeometryBasics.Point{2, Float32}, GeometryBasics.LineString{2, Float32, GeometryBasics.Point{2, Float32}, Base.ReinterpretArray{GeometryBasics.Line{2, Float32}, 1, Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, GeometryBasics.TupleView{Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, 2, 1, Vector{GeometryBasics.Point{2, Float32}}}, false}}, Vector{GeometryBasics.LineString{2, Float32, GeometryBasics.Point{2, Float32}, Base.ReinterpretArray{GeometryBasics.Line{2, Float32}, 1, Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, GeometryBasics.TupleView{Tuple{GeometryBasics.Point{2, Float32}, GeometryBasics.Point{2, Float32}}, 2, 1, Vector{GeometryBasics.Point{2, Float32}}}, false}}}}}}}) @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/overrides.jl:17 [10] cairo_draw(screen::CairoMakie.Screen{CairoMakie.IMAGE}, scene::Makie.Scene) @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/infrastructure.jl:51 [11] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE}) @ CairoMakie ~/.julia/packages/CairoMakie/W0SZK/src/screen.jl:311 [12] colorbuffer(screen::CairoMakie.Screen{CairoMakie.IMAGE}, format::Makie.ImageStorageFormat) @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:382 [13] colorbuffer(fig::Makie.FigureAxisPlot, format::Makie.ImageStorageFormat; update::Bool, backend::Module, screen_config::@Kwargs{}) @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:466 [14] colorbuffer @ ~/.julia/packages/Makie/VRavR/src/display.jl:457 [inlined] [15] colorbuffer(fig::Makie.FigureAxisPlot) @ Makie ~/.julia/packages/Makie/VRavR/src/display.jl:457 [16] top-level scope @ ~/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:6 [17] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [18] top-level scope @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:11 [19] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [20] macro expansion @ ~/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:15 [inlined] [21] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [22] top-level scope @ ~/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:36 [23] include(mod::Module, _path::String) @ Base ./Base.jl:309 [24] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3000 [25] top-level scope @ stdin:5 [26] eval(m::Module, e::Any) @ Core ./boot.jl:489 [27] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [28] include_string @ ./loading.jl:2856 [inlined] [29] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [30] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/Makie/VRavR/precompile/shared-precompile.jl:77 in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/precompiles.jl:10 in expression starting at /home/pkgeval/.julia/packages/CairoMakie/W0SZK/src/CairoMakie.jl:1 in expression starting at stdin:5 PhyloClustering Failed to precompile PhyloClustering [2e4ec7c6-185f-4bfd-8419-ce336ea983f6] to "/home/pkgeval/.julia/compiled/v1.13/PhyloClustering/jl_h5ZYjn" (ProcessExited(1)). ERROR: LoadError: syntax: misplaced "global" declaration Stacktrace: [1] top-level scope @ ~/.julia/packages/NLopt/6hGun/src/NLopt.jl:850 [2] include(mod::Module, _path::String) @ Base ./Base.jl:309 [3] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3000 [4] top-level scope @ stdin:5 [5] eval(m::Module, e::Any) @ Core ./boot.jl:489 [6] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [7] include_string @ ./loading.jl:2856 [inlined] [8] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [9] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/NLopt/6hGun/src/NLopt.jl:6 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile NLopt [76087f3c-5699-56af-9a33-bf431cd00edd] to "/home/pkgeval/.julia/compiled/v1.13/NLopt/jl_Dc2Xxl" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3287 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#232 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3858 [11] maybe_cachefile_lock @ ./loading.jl:3855 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [14] macro expansion @ ./loading.jl:2394 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [17] require @ ./loading.jl:2335 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [21] top-level scope @ ~/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:28 [22] include(mod::Module, _path::String) @ Base ./Base.jl:309 [23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3000 [24] top-level scope @ stdin:5 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [27] include_string @ ./loading.jl:2856 [inlined] [28] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [29] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/PhyloNetworks/V8OaV/src/PhyloNetworks.jl:3 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile PhyloNetworks [33ad39ac-ed31-50eb-9b15-43d0656eaa72] to "/home/pkgeval/.julia/compiled/v1.13/PhyloNetworks/jl_4dDF9g" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3287 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#232 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3858 [11] maybe_cachefile_lock @ ./loading.jl:3855 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [14] macro expansion @ ./loading.jl:2394 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [17] require @ ./loading.jl:2335 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [21] top-level scope @ ~/.julia/packages/PhyloClustering/7nfrG/src/bipartition.jl:1 [22] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [23] top-level scope @ ~/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:4 [24] include(mod::Module, _path::String) @ Base ./Base.jl:309 [25] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3000 [26] top-level scope @ stdin:5 [27] eval(m::Module, e::Any) @ Core ./boot.jl:489 [28] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [29] include_string @ ./loading.jl:2856 [inlined] [30] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [31] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/bipartition.jl:1 in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/src/PhyloClustering.jl:3 in expression starting at stdin:5 in expression starting at /home/pkgeval/.julia/packages/PhyloClustering/7nfrG/test/runtests.jl:1 Testing failed after 202.92s ERROR: LoadError: Package PhyloClustering errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2421 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2276 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:498 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:309 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:331 [12] _start() @ Base ./client.jl:564 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1954.53s: package has syntax issues