Package evaluation of NetworkDynamics on Julia 1.13.0-DEV.636 (2bd37fbbab*) started at 2025-05-25T23:29:08.703 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.27s ################################################################################ # Installation # Installing NetworkDynamics... Resolving package versions... Updating `~/.julia/environments/v1.13/Project.toml` [22e9dc34] + NetworkDynamics v0.9.18 Updating `~/.julia/environments/v1.13/Manifest.toml` [47edcb42] + ADTypes v1.14.0 [7d9f7c33] + Accessors v0.1.42 [79e6a3ab] + Adapt v4.3.0 [dce04be8] + ArgCheck v2.5.0 [ec485272] + ArnoldiMethod v0.4.0 [4fba245c] + ArrayInterface v7.19.0 [4c555306] + ArrayLayouts v1.11.1 [a9b6321e] + Atomix v1.1.1 [62783981] + BitTwiddlingConvenienceFunctions v0.1.6 [70df07ce] + BracketingNonlinearSolve v1.2.0 [2a0fbf3d] + CPUSummary v0.2.6 [d360d2e6] + ChainRulesCore v1.25.1 [fb6a15b2] + CloseOpenIntervals v0.1.13 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [f70d9fcc] + CommonWorldInvalidations v1.0.0 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [2569d6c7] + ConcreteStructs v0.2.3 [187b0558] + ConstructionBase v1.5.8 [adafc99b] + CpuId v0.3.1 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [2b5f629d] + DiffEqBase v6.175.0 [459566f4] + DiffEqCallbacks v4.6.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [a0c0ee7d] + DifferentiationInterface v0.7.0 [ffbed154] + DocStringExtensions v0.9.4 [4e289a0a] + EnumX v1.0.5 [f151be2c] + EnzymeCore v0.8.9 [e2ba6199] + ExprTools v0.1.10 [55351af7] + ExproniconLite v0.10.14 [7034ab61] + FastBroadcast v0.3.5 [9aa1b823] + FastClosures v0.3.2 [a4df4552] + FastPower v1.1.2 [1a297f60] + FillArrays v1.13.0 [6a86dc24] + FiniteDiff v2.27.0 ⌅ [f6369f11] + ForwardDiff v0.10.38 [069b7b12] + FunctionWrappers v1.1.3 [77dc65aa] + FunctionWrappersWrappers v0.1.3 [d9f16b24] + Functors v0.5.2 [46192b85] + GPUArraysCore v0.2.0 [86223c79] + Graphs v1.12.1 [076d061b] + HashArrayMappedTries v0.2.0 [615f187c] + IfElse v0.1.1 [d25df0c9] + Inflate v0.1.5 [3587e190] + InverseFunctions v0.1.17 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [ae98c720] + Jieko v0.2.1 [63c18a36] + KernelAbstractions v0.9.34 [ba0b0d4f] + Krylov v0.10.1 [b964fa9f] + LaTeXStrings v1.4.0 [10f19ff3] + LayoutPointers v0.1.17 [5078a376] + LazyArrays v2.6.1 [87fe0de2] + LineSearch v0.1.4 [7ed4a6bd] + LinearSolve v3.14.2 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [d125e4d3] + ManualMemory v0.1.8 [bb5d69b7] + MaybeInplace v0.1.4 [2a8e4939] + Mixers v0.1.2 [2e0e35c7] + Moshi v0.3.5 [46d2c3a1] + MuladdMacro v0.2.4 [872c559c] + NNlib v0.9.30 [77ba4419] + NaNMath v1.1.3 [22e9dc34] + NetworkDynamics v0.9.18 [8913a72c] + NonlinearSolve v4.9.0 [be0214bd] + NonlinearSolveBase v1.10.0 [5959db7a] + NonlinearSolveFirstOrder v1.5.0 [9a2c21bd] + NonlinearSolveQuasiNewton v1.5.0 [26075421] + NonlinearSolveSpectralMethods v1.2.0 [bac558e1] + OrderedCollections v1.8.1 [d96e819e] + Parameters v0.12.3 [f517fe37] + Polyester v0.7.17 [1d0040c9] + PolyesterWeave v0.2.2 [d236fae5] + PreallocationTools v0.4.27 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [3cdcf5f2] + RecipesBase v1.3.4 [731186ca] + RecursiveArrayTools v3.33.0 [189a3867] + Reexport v1.2.2 [ae029012] + Requires v1.3.1 [7e49a35a] + RuntimeGeneratedFunctions v0.5.14 [94e857df] + SIMDTypes v0.1.0 [0bca4576] + SciMLBase v2.94.1 [19f34311] + SciMLJacobianOperators v0.1.5 ⌅ [c0aeaf25] + SciMLOperators v0.4.0 [53ae85a6] + SciMLStructures v1.7.0 [7e506255] + ScopedValues v1.3.0 [efcf1570] + Setfield v1.1.2 [727e6d20] + SimpleNonlinearSolve v2.5.0 [699a6c99] + SimpleTraits v0.9.4 [0a514795] + SparseMatrixColorings v0.4.19 [276daf66] + SpecialFunctions v2.5.1 [aedffcd0] + Static v1.2.0 [0d7ed370] + StaticArrayInterface v1.8.0 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [9672c7b4] + SteadyStateDiffEq v2.5.0 [7792a7ef] + StrideArraysCore v0.5.7 [892a3eda] + StringManipulation v0.4.1 [2efcf032] + SymbolicIndexingInterface v0.3.40 [3783bdb8] + TableTraits v1.0.1 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[9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [1a1011a3] + SharedArrays v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.12.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 5.77s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... ┌ Warning: Could not use exact versions of packages in manifest, re-resolving └ @ TestEnv ~/.julia/packages/TestEnv/iS95e/src/julia-1.11/activate_set.jl:75 ┌ Error: Failed to use TestEnv.jl; test dependencies will not be precompiled │ exception = │ empty intersection between NetworkDynamics@0.0.0 and project compatibility 0.0.1 - * │ Stacktrace: │ [1] resolve_versions!(env::Pkg.Types.EnvCache, registries::Vector{Pkg.Registry.RegistryInstance}, pkgs::Vector{PackageSpec}, julia_version::VersionNumber, installed_only::Bool) │ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:509 │ [2] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}, level::UpgradeLevel; skip_writing_project::Bool, preserve::Nothing) │ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:1894 │ [3] up │ @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:1873 [inlined] │ [4] up(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; level::UpgradeLevel, mode::PackageMode, preserve::Nothing, update_registry::Bool, skip_writing_project::Bool, kwargs::@Kwargs{io::Base.DevNull}) │ @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:404 │ [5] up │ @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:378 [inlined] │ [6] up │ @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:169 [inlined] │ [7] #resolve#167 │ @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:410 [inlined] │ [8] resolve │ @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:409 [inlined] │ [9] activate(pkg::String; allow_reresolve::Bool) │ @ TestEnv ~/.julia/packages/TestEnv/iS95e/src/julia-1.11/activate_set.jl:80 │ [10] activate(pkg::String) │ @ TestEnv ~/.julia/packages/TestEnv/iS95e/src/julia-1.11/activate_set.jl:9 │ [11] top-level scope │ @ /PkgEval.jl/scripts/precompile.jl:24 │ [12] include(mod::Module, _path::String) │ @ Base ./Base.jl:309 │ [13] exec_options(opts::Base.JLOptions) │ @ Base ./client.jl:331 │ [14] _start() │ @ Base ./client.jl:564 └ @ Main /PkgEval.jl/scripts/precompile.jl:26 Precompiling package dependencies... Precompiling packages... 74237.6 ms ✓ NonlinearSolveBase → NonlinearSolveBaseForwardDiffExt 20274.9 ms ✓ BracketingNonlinearSolve → BracketingNonlinearSolveForwardDiffExt 14338.2 ms ✓ DiffEqCallbacks 78727.2 ms ✓ NonlinearSolveSpectralMethods → NonlinearSolveSpectralMethodsForwardDiffExt 52863.5 ms ? NonlinearSolveQuasiNewton → NonlinearSolveQuasiNewtonForwardDiffExt 113985.4 ms ✓ NonlinearSolveFirstOrder 27135.1 ms ✓ SimpleNonlinearSolve 26991.9 ms ✓ SteadyStateDiffEq 6773.7 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 8832.6 ms ✓ SimpleNonlinearSolve → SimpleNonlinearSolveDiffEqBaseExt 89111.3 ms ✓ NonlinearSolve 144284.4 ms ? NetworkDynamics 10 dependencies successfully precompiled in 673 seconds. 213 already precompiled. 2 dependencies failed but may be precompilable after restarting julia 4 dependencies had output during precompilation: ┌ NonlinearSolveFirstOrder │ WARNING: Detected access to binding `NonlinearSolveFirstOrder.GeneralizedFirstOrderAlgorithm` in a world prior to its definition world. │ Julia 1.12 has introduced more strict world age semantics for global bindings. │ !!! This code may malfunction under Revise. │ !!! This code will error in future versions of Julia. │ Hint: Add an appropriate `invokelatest` around the access to this binding. │ To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. └ ┌ SimpleNonlinearSolve │ WARNING: Detected access to binding `SimpleNonlinearSolve.SimpleNewtonRaphson` in a world prior to its definition world. │ Julia 1.12 has introduced more strict world age semantics for global bindings. │ !!! This code may malfunction under Revise. │ !!! This code will error in future versions of Julia. │ Hint: Add an appropriate `invokelatest` around the access to this binding. │ To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. └ ┌ NetworkDynamics │ WARNING: Method definition (::Type{SparseArrays.SparseVector{Tv, Ti}})(FillArrays.Zeros{T, 1, Axes} where Axes where T) where {Tv, Ti} in module FillArraysSparseArraysExt at /home/pkgeval/.julia/packages/FillArrays/lVl4c/ext/FillArraysSparseArraysExt.jl:17 overwritten in module FillArraysSparseArraysExt on the same line (check for duplicate calls to `include`). │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ ┌ NonlinearSolveQuasiNewton → NonlinearSolveQuasiNewtonForwardDiffExt │ WARNING: Method definition (::Type{SparseArrays.SparseVector{Tv, Ti}})(FillArrays.Zeros{T, 1, Axes} where Axes where T) where {Tv, Ti} in module FillArraysSparseArraysExt at /home/pkgeval/.julia/packages/FillArrays/lVl4c/ext/FillArraysSparseArraysExt.jl:17 overwritten in module FillArraysSparseArraysExt on the same line (check for duplicate calls to `include`). │ ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. └ Precompilation completed after 678.66s ################################################################################ # Testing # Testing NetworkDynamics Test Could not use exact versions of packages in manifest. Re-resolving dependencies Updating `/tmp/jl_y5qkPX/Project.toml` [4c88cf16] + Aqua v0.8.12 [824d6782] + Bonito v4.0.5 [052768ef] + CUDA v5.8.1 [13f3f980] + CairoMakie v0.13.7 [0ca39b1e] + Chairmarks v1.3.1 [a93c6f00] + DataFrames v1.7.0 [82cc6244] + DataInterpolations v8.0.1 [8bb1440f] + DelimitedFiles v1.9.1 ⌅ [a0c0ee7d] ↓ DifferentiationInterface v0.7.0 ⇒ v0.6.54 ⌅ [a82114a7] + DifferentiationInterfaceTest v0.9.6 [06fc5a27] + DynamicQuantities v1.8.0 [7d51a73a] + ExplicitImports v1.11.2 [1ecd5474] + GraphMakie v0.5.14 [961ee093] + ModelingToolkit v9.80.1 [22e9dc34] ~ NetworkDynamics v0.9.18 `..` ⇒ v0.9.18 `~/.julia/packages/NetworkDynamics/ajsEu` [127b3ac7] + OrdinaryDiffEqNonlinearSolve v1.9.0 [43230ef6] + OrdinaryDiffEqRosenbrock v1.10.0 [2d112036] + OrdinaryDiffEqSDIRK v1.3.0 [b1df2697] + OrdinaryDiffEqTsit5 v1.1.0 [91a5bcdd] + Plots v1.40.13 [1bc83da4] + SafeTestsets v0.1.0 [47aef6b3] + SimpleWeightedGraphs v1.5.0 [860ef19b] + StableRNGs v1.0.3 [0c5d862f] + Symbolics v6.39.1 [276b4fcb] + WGLMakie v0.11.7 [8dfed614] ~ Test ⇒ v1.11.0 Updating `/tmp/jl_y5qkPX/Manifest.toml` [621f4979] + AbstractFFTs v1.5.0 [1520ce14] + AbstractTrees v0.4.5 [35492f91] + AdaptivePredicates v1.2.0 [66dad0bd] + AliasTables v1.1.3 [9b6a8646] + AllocCheck v0.2.2 [27a7e980] + Animations v0.4.2 [4c88cf16] + Aqua v0.8.12 [67c07d97] + Automa v1.1.0 [13072b0f] + AxisAlgorithms v1.1.0 [39de3d68] + AxisArrays v0.4.7 [ab4f0b2a] + BFloat16s v0.5.1 [e2ed5e7c] + Bijections v0.1.10 [d1d4a3ce] + BitFlags v0.1.9 [8e7c35d0] + BlockArrays v1.6.3 [824d6782] + Bonito v4.0.5 [fa961155] + CEnum v0.5.0 [96374032] + CRlibm v1.0.2 [052768ef] + CUDA v5.8.1 [1af6417a] + CUDA_Runtime_Discovery v0.3.5 [159f3aea] + Cairo v1.1.1 [13f3f980] + CairoMakie v0.13.7 [0ca39b1e] + Chairmarks v1.3.1 [da1fd8a2] + CodeTracking v1.3.9 [944b1d66] + CodecZlib v0.7.8 [a2cac450] + ColorBrewer v0.4.1 [35d6a980] + ColorSchemes v3.29.0 [3da002f7] + ColorTypes v0.12.1 [c3611d14] + ColorVectorSpace v0.11.0 [5ae59095] + Colors v0.13.1 [861a8166] + Combinatorics v1.0.3 [a80b9123] + CommonMark v0.9.1 [b152e2b5] + CompositeTypes v0.1.4 [f0e56b4a] + ConcurrentUtilities v2.5.0 [d38c429a] + Contour v0.6.3 [a93c6f00] + DataFrames v1.7.0 [82cc6244] + DataInterpolations v8.0.1 [927a84f5] + DelaunayTriangulation v1.6.4 [8bb1440f] + DelimitedFiles v1.9.1 [77a26b50] + DiffEqNoiseProcess v5.24.1 ⌅ [a0c0ee7d] ↓ DifferentiationInterface v0.7.0 ⇒ v0.6.54 ⌅ [a82114a7] + DifferentiationInterfaceTest v0.9.6 [8d63f2c5] + DispatchDoctor v0.4.19 [31c24e10] + Distributions v0.25.120 [5b8099bc] + DomainSets v0.7.15 [7c1d4256] + DynamicPolynomials v0.6.2 [06fc5a27] + DynamicQuantities v1.8.0 [429591f6] + ExactPredicates v2.2.8 [460bff9d] + ExceptionUnwrapping v0.1.11 [7d51a73a] + ExplicitImports v1.11.2 [411431e0] + Extents v0.1.6 [c87230d0] + FFMPEG v0.4.2 [7a1cc6ca] + FFTW v1.8.1 [5789e2e9] + FileIO v1.17.0 ⌅ [8fc22ac5] + FilePaths v0.8.3 [48062228] + FilePathsBase v0.9.24 [64ca27bc] + FindFirstFunctions v1.4.1 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 [b38be410] + FreeType v4.1.1 [663a7486] + FreeTypeAbstraction v0.10.6 [0c68f7d7] + GPUArrays v11.2.2 [61eb1bfa] + GPUCompiler v1.5.1 [096a3bc2] + GPUToolbox v0.2.0 [28b8d3ca] + GR v0.73.16 [68eda718] + GeoFormatTypes v0.4.4 [cf35fbd7] + GeoInterface v1.4.1 [5c1252a2] + GeometryBasics v0.5.9 [c27321d9] + Glob v1.3.1 [1ecd5474] + GraphMakie v0.5.14 [a2bd30eb] + Graphics v1.1.3 [3955a311] + GridLayoutBase v0.11.1 [42e2da0e] + Grisu v1.0.2 [cd3eb016] + HTTP v1.10.16 [34004b35] + HypergeometricFunctions v0.3.28 [47d2ed2b] + Hyperscript v0.0.5 [2803e5a7] + ImageAxes v0.6.12 [c817782e] + ImageBase v0.1.7 [a09fc81d] + ImageCore v0.10.5 [82e4d734] + ImageIO v0.6.9 [bc367c6b] + ImageMetadata v0.9.10 [9b13fd28] + IndirectArrays v1.0.0 [842dd82b] + InlineStrings v1.4.3 [18e54dd8] + IntegerMathUtils v0.1.2 ⌅ [a98d9a8b] + Interpolations v0.15.1 [d1acc4aa] + IntervalArithmetic v0.22.35 [8197267c] + IntervalSets v0.7.11 [41ab1584] + InvertedIndices v1.3.1 [f1662d9f] + Isoband v0.1.1 [c8e1da08] + IterTools v1.10.0 ⌅ [c3a54625] + JET v0.9.19 [1019f520] + JLFzf v0.1.11 [682c06a0] + JSON v0.21.4 [b835a17e] + JpegTurbo v0.1.6 [98e50ef6] + JuliaFormatter v2.1.2 ⌅ [aa1ae85d] + JuliaInterpreter v0.9.46 ⌅ [70703baa] + JuliaSyntax v0.4.10 [ccbc3e58] + JumpProcesses v9.14.3 [5ab0869b] + KernelDensity v0.6.9 [929cbde3] + LLVM v9.4.0 [8b046642] + LLVMLoopInfo v1.0.0 [23fbe1c1] + Latexify v0.16.7 [8cdb02fc] + LazyModules v0.3.1 [d3d80556] + LineSearches v7.3.0 [e6f89c97] + LoggingExtras v1.1.0 ⌃ [6f1432cf] + LoweredCodeUtils v3.2.2 [d8e11817] + MLStyle v0.4.17 [ee78f7c6] + Makie v0.22.7 [20f20a25] + MakieCore v0.9.3 [dbb5928d] + MappedArrays v0.4.2 [0a4f8689] + MathTeXEngine v0.6.4 [739be429] + MbedTLS v1.1.9 [442fdcdd] + Measures v0.3.2 [e1d29d7a] + Missings v1.2.0 [961ee093] + ModelingToolkit v9.80.1 [e94cdb99] + MosaicViews v0.3.4 [99f44e22] + MsgPack v1.2.1 [102ac46a] + MultivariatePolynomials v0.5.9 [d8a4904e] + MutableArithmetics v1.6.4 [d41bc354] + NLSolversBase v7.9.1 [5da4648a] + NVTX v1.0.0 [f09324ee] + Netpbm v1.1.1 [22e9dc34] ~ NetworkDynamics v0.9.18 `..` ⇒ v0.9.18 `~/.julia/packages/NetworkDynamics/ajsEu` [46757867] + NetworkLayout v0.4.10 [510215fc] + Observables v0.5.5 [6fe1bfb0] + OffsetArrays v1.17.0 [52e1d378] + OpenEXR v0.3.3 [4d8831e6] + OpenSSL v1.5.0 [429524aa] + Optim v1.12.0 [bbf590c4] + OrdinaryDiffEqCore v1.26.0 [4302a76b] + OrdinaryDiffEqDifferentiation v1.9.0 [127b3ac7] + OrdinaryDiffEqNonlinearSolve v1.9.0 [43230ef6] + OrdinaryDiffEqRosenbrock v1.10.0 [2d112036] + OrdinaryDiffEqSDIRK v1.3.0 [b1df2697] + OrdinaryDiffEqTsit5 v1.1.0 [90014a1f] + PDMats v0.11.35 [f57f5aa1] + PNGFiles v0.4.4 [19eb6ba3] + Packing v0.5.1 [5432bcbf] + PaddedViews v0.5.12 [69de0a69] + Parsers v2.8.3 [eebad327] + PkgVersion v0.3.3 [ccf2f8ad] + PlotThemes v3.3.0 [995b91a9] + PlotUtils v1.4.3 [91a5bcdd] + Plots v1.40.13 [e409e4f3] + PoissonRandom v0.4.4 [647866c9] + PolygonOps v0.1.2 [3a141323] + PolynomialRoots v1.0.0 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v1.8.12+0 [0c0b7dd1] + Xorg_libXau_jll v1.0.13+0 [935fb764] + Xorg_libXcursor_jll v1.2.4+0 [a3789734] + Xorg_libXdmcp_jll v1.1.6+0 [1082639a] + Xorg_libXext_jll v1.3.7+0 [d091e8ba] + Xorg_libXfixes_jll v6.0.1+0 [a51aa0fd] + Xorg_libXi_jll v1.8.3+0 [d1454406] + Xorg_libXinerama_jll v1.1.6+0 [ec84b674] + Xorg_libXrandr_jll v1.5.5+0 [ea2f1a96] + Xorg_libXrender_jll v0.9.12+0 [c7cfdc94] + Xorg_libxcb_jll v1.17.1+0 [cc61e674] + Xorg_libxkbfile_jll v1.1.3+0 [e920d4aa] + Xorg_xcb_util_cursor_jll v0.1.4+0 [12413925] + Xorg_xcb_util_image_jll v0.4.0+1 [2def613f] + Xorg_xcb_util_jll v0.4.0+1 [975044d2] + Xorg_xcb_util_keysyms_jll v0.4.0+1 [0d47668e] + Xorg_xcb_util_renderutil_jll v0.3.9+1 [c22f9ab0] + Xorg_xcb_util_wm_jll v0.4.1+1 [35661453] + Xorg_xkbcomp_jll v1.4.7+0 [33bec58e] + Xorg_xkeyboard_config_jll v2.44.0+0 [c5fb5394] + Xorg_xtrans_jll v1.6.0+0 [1e29f10c] + demumble_jll v1.3.0+0 [35ca27e7] + eudev_jll v3.2.9+0 [214eeab7] + fzf_jll v0.61.1+0 [1a1c6b14] + gperf_jll v3.3.0+0 [9a68df92] + isoband_jll v0.2.3+0 [a4ae2306] + libaom_jll v3.11.0+0 [0ac62f75] + libass_jll v0.15.2+0 [1183f4f0] + libdecor_jll v0.2.2+0 [2db6ffa8] + libevdev_jll v1.11.0+0 [f638f0a6] + libfdk_aac_jll v2.0.3+0 [36db933b] + libinput_jll v1.18.0+0 [b53b4c65] + libpng_jll v1.6.48+0 [075b6546] + libsixel_jll v1.10.5+0 [f27f6e37] + libvorbis_jll v1.3.7+2 [c5f90fcd] + libwebp_jll v1.5.0+0 [009596ad] + mtdev_jll v1.1.6+0 ⌅ [1270edf5] + x264_jll v2021.5.5+0 ⌅ [dfaa095f] + x265_jll v3.5.0+0 [d8fb68d0] + xkbcommon_jll v1.8.1+0 [8bf52ea8] + CRC32c v1.11.0 [3fa0cd96] + REPL v1.11.0 [4607b0f0] + SuiteSparse [8dfed614] ~ Test ⇒ v1.11.0 [efcefdf7] + PCRE2_jll v10.44.0+1 [3161d3a3] + Zstd_jll v1.5.7+1 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Test Successfully re-resolved Status `/tmp/jl_y5qkPX/Project.toml` [79e6a3ab] Adapt v4.3.0 [4c88cf16] Aqua v0.8.12 [824d6782] Bonito v4.0.5 [052768ef] CUDA v5.8.1 [13f3f980] CairoMakie v0.13.7 [0ca39b1e] Chairmarks v1.3.1 [a93c6f00] DataFrames v1.7.0 [82cc6244] DataInterpolations v8.0.1 [8bb1440f] DelimitedFiles v1.9.1 [459566f4] DiffEqCallbacks v4.6.0 ⌅ [a0c0ee7d] DifferentiationInterface v0.6.54 ⌅ [a82114a7] DifferentiationInterfaceTest v0.9.6 [06fc5a27] DynamicQuantities v1.8.0 [7d51a73a] ExplicitImports v1.11.2 [6a86dc24] FiniteDiff v2.27.0 ⌅ [f6369f11] ForwardDiff v0.10.38 [1ecd5474] GraphMakie v0.5.14 [86223c79] Graphs v1.12.1 [63c18a36] KernelAbstractions v0.9.34 [961ee093] ModelingToolkit v9.80.1 [22e9dc34] NetworkDynamics v0.9.18 `~/.julia/packages/NetworkDynamics/ajsEu` [bac558e1] OrderedCollections v1.8.1 [127b3ac7] OrdinaryDiffEqNonlinearSolve v1.9.0 [43230ef6] OrdinaryDiffEqRosenbrock v1.10.0 [2d112036] OrdinaryDiffEqSDIRK v1.3.0 [b1df2697] OrdinaryDiffEqTsit5 v1.1.0 [91a5bcdd] Plots v1.40.13 [1bc83da4] SafeTestsets v0.1.0 [0bca4576] SciMLBase v2.94.1 [47aef6b3] SimpleWeightedGraphs v1.5.0 [860ef19b] StableRNGs v1.0.3 [aedffcd0] Static v1.2.0 [90137ffa] StaticArrays v1.9.13 [9672c7b4] SteadyStateDiffEq v2.5.0 [2efcf032] SymbolicIndexingInterface v0.3.40 [0c5d862f] Symbolics v6.39.1 [a759f4b9] TimerOutputs v0.5.29 [276b4fcb] WGLMakie v0.11.7 [b77e0a4c] InteractiveUtils v1.11.0 [37e2e46d] LinearAlgebra v1.12.0 [56ddb016] Logging v1.11.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [2f01184e] SparseArrays v1.12.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_y5qkPX/Manifest.toml` [47edcb42] ADTypes v1.14.0 [621f4979] AbstractFFTs v1.5.0 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [35492f91] AdaptivePredicates v1.2.0 [66dad0bd] AliasTables v1.1.3 [9b6a8646] AllocCheck v0.2.2 [27a7e980] Animations v0.4.2 [4c88cf16] Aqua v0.8.12 [dce04be8] ArgCheck v2.5.0 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.19.0 [4c555306] ArrayLayouts v1.11.1 [a9b6321e] Atomix v1.1.1 [67c07d97] Automa v1.1.0 [13072b0f] AxisAlgorithms v1.1.0 [39de3d68] AxisArrays v0.4.7 [ab4f0b2a] BFloat16s v0.5.1 [e2ed5e7c] Bijections v0.1.10 [d1d4a3ce] BitFlags v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [8e7c35d0] BlockArrays v1.6.3 [824d6782] Bonito v4.0.5 [70df07ce] BracketingNonlinearSolve v1.2.0 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.6 [96374032] CRlibm v1.0.2 [052768ef] CUDA v5.8.1 [1af6417a] CUDA_Runtime_Discovery v0.3.5 [159f3aea] Cairo v1.1.1 [13f3f980] CairoMakie v0.13.7 [d360d2e6] ChainRulesCore v1.25.1 [0ca39b1e] Chairmarks v1.3.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [da1fd8a2] CodeTracking v1.3.9 [944b1d66] CodecZlib v0.7.8 [a2cac450] ColorBrewer v0.4.1 [35d6a980] ColorSchemes v3.29.0 [3da002f7] ColorTypes v0.12.1 [c3611d14] ColorVectorSpace v0.11.0 [5ae59095] Colors v0.13.1 [861a8166] Combinatorics v1.0.3 [a80b9123] CommonMark v0.9.1 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [b152e2b5] CompositeTypes v0.1.4 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.5.8 [d38c429a] Contour v0.6.3 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [82cc6244] DataInterpolations v8.0.1 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [927a84f5] DelaunayTriangulation v1.6.4 [8bb1440f] DelimitedFiles v1.9.1 [2b5f629d] DiffEqBase v6.175.0 [459566f4] DiffEqCallbacks v4.6.0 [77a26b50] DiffEqNoiseProcess v5.24.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 ⌅ [a0c0ee7d] DifferentiationInterface v0.6.54 ⌅ [a82114a7] DifferentiationInterfaceTest v0.9.6 [8d63f2c5] DispatchDoctor v0.4.19 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.4 [5b8099bc] DomainSets v0.7.15 [7c1d4256] DynamicPolynomials v0.6.2 [06fc5a27] DynamicQuantities v1.8.0 [4e289a0a] EnumX v1.0.5 [f151be2c] EnzymeCore v0.8.9 [429591f6] ExactPredicates v2.2.8 [460bff9d] ExceptionUnwrapping v0.1.11 [7d51a73a] ExplicitImports v1.11.2 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [411431e0] Extents v0.1.6 [c87230d0] FFMPEG v0.4.2 [7a1cc6ca] FFTW v1.8.1 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [a4df4552] FastPower v1.1.2 [5789e2e9] FileIO v1.17.0 ⌅ [8fc22ac5] FilePaths v0.8.3 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 [64ca27bc] FindFirstFunctions v1.4.1 [6a86dc24] FiniteDiff v2.27.0 [53c48c17] FixedPointNumbers v0.8.5 [1fa38f19] Format v1.3.7 ⌅ [f6369f11] ForwardDiff v0.10.38 [b38be410] FreeType v4.1.1 [663a7486] FreeTypeAbstraction v0.10.6 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 [d9f16b24] Functors v0.5.2 [0c68f7d7] GPUArrays v11.2.2 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Precompiling packages... Info Given NetworkDynamics was explicitly requested, output will be shown live  WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl WARNING: Detected access to binding `NonlinearSolveFirstOrder.GeneralizedFirstOrderAlgorithm` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl 220344.4 ms ✓ NetworkDynamics 1 dependency successfully precompiled in 227 seconds. 224 already precompiled. 1 dependency had output during precompilation: ┌ NetworkDynamics │ [Output was shown above] └ WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl Precompiling packages... 90137.4 ms ✓ DataFrames Info Given CUDA was explicitly requested, output will be shown live  WARNING: Constructor for type "Int" was extended in `CUDA` without explicit qualification or import.  NOTE: Assumed "Int" refers to `Base.Int`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function Int end`.  Hint: To silence the warning, qualify `Int` as `Base.Int` in the method signature or explicitly `import Base: Int`. WARNING: Constructor for type "UInt" was extended in `CUDA` without explicit qualification or import.  NOTE: Assumed "UInt" refers to `Base.UInt`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function UInt end`.  Hint: To silence the warning, qualify `UInt` as `Base.UInt` in the method signature or explicitly `import Base: UInt`. WARNING: Constructor for type "BroadcastStyle" was extended in `CUDA` without explicit qualification or import.  NOTE: Assumed "BroadcastStyle" refers to `Broadcast.BroadcastStyle`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function BroadcastStyle end`.  Hint: To silence the warning, qualify `BroadcastStyle` as `Broadcast.BroadcastStyle` in the method signature or explicitly `import Broadcast: BroadcastStyle`. WARNING: Constructor for type "CuArray" was extended in `CUBLAS` without explicit qualification or import.  NOTE: Assumed "CuArray" refers to `CUDA.CuArray`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function CuArray end`.  Hint: To silence the warning, qualify `CuArray` as `CUDA.CuArray` in the method signature or explicitly `import CUDA: CuArray`. WARNING: Constructor for type "SparseVector" was extended in `CUSPARSE` without explicit qualification or import.  NOTE: Assumed "SparseVector" refers to `SparseArrays.SparseVector`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function SparseVector end`.  Hint: To silence the warning, qualify `SparseVector` as `SparseArrays.SparseVector` in the method signature or explicitly `import SparseArrays: SparseVector`. WARNING: Constructor for type "SparseMatrixCSC" was extended in `CUSPARSE` without explicit qualification or import.  NOTE: Assumed "SparseMatrixCSC" refers to `SparseArrays.SparseMatrixCSC`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function SparseMatrixCSC end`.  Hint: To silence the warning, qualify `SparseMatrixCSC` as `SparseArrays.SparseMatrixCSC` in the method signature or explicitly `import SparseArrays: SparseMatrixCSC`. WARNING: Constructor for type "CuVector" was extended in `CUSPARSE` without explicit qualification or import.  NOTE: Assumed "CuVector" refers to `CUDA.CuVector`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function CuVector end`.  Hint: To silence the warning, qualify `CuVector` as `CUDA.CuVector` in the method signature or explicitly `import CUDA: CuVector`. WARNING: Constructor for type "CuMatrix" was extended in `CUSOLVER` without explicit qualification or import.  NOTE: Assumed "CuMatrix" refers to `CUDA.CuMatrix`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function CuMatrix end`.  Hint: To silence the warning, qualify `CuMatrix` as `CUDA.CuMatrix` in the method signature or explicitly `import CUDA: CuMatrix`. WARNING: Constructor for type "CuArray" was extended in `CUSOLVER` without explicit qualification or import.  NOTE: Assumed "CuArray" refers to `CUDA.CuArray`. This behavior is deprecated and may differ in future versions.  NOTE: This behavior may have differed in Julia versions prior to 1.12.  Hint: If you intended to create a new generic function of the same name, use `function CuArray end`.  Hint: To silence the warning, qualify `CuArray` as `CUDA.CuArray` in the method signature or explicitly `import CUDA: CuArray`. 170322.7 ms ✓ CUDA 38738.5 ms ✓ Atomix → AtomixCUDAExt 3 dependencies successfully precompiled in 301 seconds. 100 already precompiled. 1 dependency had output during precompilation: ┌ CUDA │ [Output was shown above] └ Precompiling packages... 3489.3 ms ✓ SparseMatrixColorings → SparseMatrixColoringsColorsExt 1 dependency successfully precompiled in 5 seconds. 12 already precompiled. Precompiling packages... Info Given NetworkDynamicsDataFramesExt was explicitly requested, output will be shown live  WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl 34006.4 ms ✓ NetworkDynamics → NetworkDynamicsDataFramesExt 1 dependency successfully precompiled in 38 seconds. 232 already precompiled. 1 dependency had output during precompilation: ┌ NetworkDynamics → NetworkDynamicsDataFramesExt │ [Output was shown above] └ Precompiling packages... 43782.6 ms ✓ ArrayInterface → ArrayInterfaceCUDAExt 1 dependency successfully precompiled in 46 seconds. 107 already precompiled. Precompiling packages... 47974.6 ms ✓ NNlib → NNlibCUDAExt 41081.3 ms ✓ CUDA → ChainRulesCoreExt 2 dependencies successfully precompiled in 91 seconds. 108 already precompiled. Precompiling packages... 44014.3 ms ✓ CUDA → EnzymeCoreExt Info Given DiffEqBaseCUDAExt was explicitly requested, output will be shown live  WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl 48785.8 ms ✓ DiffEqBase → DiffEqBaseCUDAExt 2 dependencies successfully precompiled in 96 seconds. 171 already precompiled. 1 dependency had output during precompilation: ┌ DiffEqBase → DiffEqBaseCUDAExt │ [Output was shown above] └ Precompiling packages... 49150.0 ms ✓ LinearSolve → LinearSolveCUDAExt 1 dependency successfully precompiled in 52 seconds. 164 already precompiled. Precompiling packages... 2036.5 ms ✓ ColorVectorSpace → SpecialFunctionsExt 44239.9 ms ✓ CUDA → SpecialFunctionsExt 2 dependencies successfully precompiled in 48 seconds. 111 already precompiled. Precompiling packages... Info Given NetworkDynamicsCUDAExt was explicitly requested, output will be shown live  WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl 73887.2 ms ✓ NetworkDynamics → NetworkDynamicsCUDAExt 1 dependency successfully precompiled in 79 seconds. 271 already precompiled. 1 dependency had output during precompilation: ┌ NetworkDynamics → NetworkDynamicsCUDAExt │ [Output was shown above] └ WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl Precompiling packages... 7578.8 ms ✓ StatsBase 15520.9 ms ✓ Distributions 15637.3 ms ✓ Optim 7712.3 ms ✓ Distributions → DistributionsTestExt 8051.6 ms ✓ Distributions → DistributionsChainRulesCoreExt 12284.5 ms ✓ DiffEqBase → DiffEqBaseDistributionsExt 92848.2 ms ✓ Symbolics 20053.9 ms ✓ DiffEqNoiseProcess 24175.8 ms ✓ Symbolics → SymbolicsForwardDiffExt 16988.0 ms ✓ DifferentiationInterface → DifferentiationInterfaceSymbolicsExt Info Given ModelingToolkit was explicitly requested, output will be shown live  WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl WARNING: Detected access to binding `ModelingToolkit.ConstraintsSystem` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `ModelingToolkit.SystemStructure` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `ModelingToolkit.SparseMatrixCLIL` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `BipartiteGraphs.BipartiteGraph` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `ModelingToolkit.ODESystem` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `ModelingToolkit.NonlinearSystem` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `ModelingToolkit.TearingState` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Detected access to binding `ModelingToolkit.ClockInference` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in var"#bareiss_update_virtual_colswap_mtk!#1725"(Any, typeof(ModelingToolkit.bareiss_update_virtual_colswap_mtk!), Any, ModelingToolkit.SparseMatrixCLIL{T, Ti} where Ti<:Integer where T, Any, Any, Any, Any) at /home/pkgeval/.julia/packages/ModelingToolkit/udKhl/src/systems/sparsematrixclil.jl WARNING: Detected access to binding `ModelingToolkit.MTKParameters` in a world prior to its definition world.  Julia 1.12 has introduced more strict world age semantics for global bindings.  !!! This code may malfunction under Revise.  !!! This code will error in future versions of Julia. Hint: Add an appropriate `invokelatest` around the access to this binding. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. 428511.9 ms ✓ ModelingToolkit 11 dependencies successfully precompiled in 660 seconds. 287 already precompiled. 3 dependencies had output during precompilation: ┌ DiffEqBase → DiffEqBaseDistributionsExt │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl └ ┌ DiffEqNoiseProcess │ WARNING: llvmcall with integer pointers is deprecated. │ Use actual pointers instead, replacing i32 or i64 with i8* or ptr │ in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl └ ┌ ModelingToolkit │ [Output was shown above] └ Precompiling packages... Info Given DataFramesExt was explicitly requested, output will be shown live   ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ======================================================================================  cmd: /opt/julia/bin/julia 508 running 1 of 1  signal (10): User defined signal 1 lookup at /source/src/subtype.c:130 [inlined] var_lt at /source/src/subtype.c:787 subtype at /source/src/subtype.c:1460 local_forall_exists_subtype at /source/src/subtype.c:1649 forall_exists_equal at /source/src/subtype.c:1778 subtype at /source/src/subtype.c:1556 subtype_unionall at /source/src/subtype.c:965 subtype at /source/src/subtype.c:1513 subtype_unionall at /source/src/subtype.c:965 subtype at /source/src/subtype.c:1513 subtype_unionall at /source/src/subtype.c:965 subtype at /source/src/subtype.c:1513 subtype_unionall at /source/src/subtype.c:965 subtype at /source/src/subtype.c:1513 subtype_unionall at /source/src/subtype.c:972 subtype at /source/src/subtype.c:1510 subtype_unionall at /source/src/subtype.c:972 subtype at /source/src/subtype.c:1510 subtype_unionall at /source/src/subtype.c:972 subtype at /source/src/subtype.c:1510 exists_subtype at /source/src/subtype.c:1793 [inlined] forall_exists_subtype at /source/src/subtype.c:1822 ijl_subtype_env at /source/src/subtype.c:2281 subtype_tuple_tail at /source/src/subtype.c:1294 [inlined] subtype_tuple at /source/src/subtype.c:1376 [inlined] subtype at /source/src/subtype.c:1550 exists_subtype at /source/src/subtype.c:1793 [inlined] forall_exists_subtype at /source/src/subtype.c:1822 ijl_types_equal at /source/src/subtype.c:2374 [inlined] ijl_types_equal at /source/src/subtype.c:2321 jl_specializations_get_linfo_ at /source/src/gf.c:225 jl_restore_system_image_from_stream_ at /source/src/staticdata.c:4159 jl_restore_package_image_from_stream at /source/src/staticdata.c:4411 ijl_restore_incremental at /source/src/staticdata.c:4493 #_include_from_serialized#868 at ./loading.jl:1274 _include_from_serialized at ./loading.jl:1246 [inlined] #_require_search_from_serialized#884 at ./loading.jl:2088 _require_search_from_serialized at ./loading.jl:1982 jfptr__require_search_from_serialized_74556.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 __require_prelocked at ./loading.jl:2600 _require_prelocked at ./loading.jl:2466 macro expansion at ./loading.jl:2394 [inlined] macro expansion at ./lock.jl:376 [inlined] __require at ./loading.jl:2359 jfptr___require_24606.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 jl_apply at /source/src/julia.h:2336 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:896 require at ./loading.jl:2335 [inlined] eval_import_path at ./module.jl:36 [inlined] eval_import_path_all at ./module.jl:60 _eval_using at ./module.jl:137 jfptr__eval_using_74179.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 jl_apply at /source/src/julia.h:2336 [inlined] do_call at /source/src/interpreter.c:124 eval_value at /source/src/interpreter.c:242 eval_stmt_value at /source/src/interpreter.c:193 [inlined] eval_body at /source/src/interpreter.c:707 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:776 jl_eval_module_expr at /source/src/toplevel.c:200 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:661 jl_toplevel_eval_flex at /source/src/toplevel.c:716 ijl_toplevel_eval at /source/src/toplevel.c:788 ijl_toplevel_eval_in at /source/src/toplevel.c:833 eval at ./boot.jl:489 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 _include at ./loading.jl:2906 include at ./Base.jl:309 include_package_for_output at ./loading.jl:3000 jfptr_include_package_for_output_22666.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 jl_apply at /source/src/julia.h:2336 [inlined] do_call at /source/src/interpreter.c:124 eval_value at /source/src/interpreter.c:242 eval_stmt_value at /source/src/interpreter.c:193 [inlined] eval_body at /source/src/interpreter.c:707 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:776 jl_toplevel_eval_flex at /source/src/toplevel.c:716 ijl_toplevel_eval at /source/src/toplevel.c:788 ijl_toplevel_eval_in at /source/src/toplevel.c:833 eval at ./boot.jl:489 include_string at ./loading.jl:2846 include_string at ./loading.jl:2856 [inlined] exec_options at ./client.jl:329 _start at ./client.jl:564 jfptr__start_20713.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 jl_apply at /source/src/julia.h:2336 [inlined] true_main at /source/src/jlapi.c:963 jl_repl_entrypoint at /source/src/jlapi.c:1130 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7846edfbb249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file)  ============================================================== Profile collected. A report will print at the next yield point ==============================================================  14237.3 ms ✓ Latexify → DataFramesExt 1 dependency successfully precompiled in 16 seconds. 39 already precompiled. 1 dependency had output during precompilation: ┌ Latexify → DataFramesExt │ [Output was shown above] └ ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 255 running 1 of 2 signal (10): User defined signal 1 unknown function (ip: 0x7ee754357f14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_30703.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 jl_apply at /source/src/julia.h:2336 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) __close at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) ios_close at /source/src/support/ios.c:689 close at ./iostream.jl:43 sort_by at ./loading.jl:1211 _broadcast_getindex_evalf at ./broadcast.jl:701 [inlined] _broadcast_getindex at ./broadcast.jl:674 [inlined] _getindex at ./broadcast.jl:622 [inlined] getindex at ./broadcast.jl:618 [inlined] macro expansion at ./broadcast.jl:997 [inlined] macro expansion at ./simdloop.jl:77 [inlined] copyto! at ./broadcast.jl:996 [inlined] copyto! at ./broadcast.jl:949 [inlined] copy at ./broadcast.jl:921 [inlined] materialize at ./broadcast.jl:896 [inlined] find_all_in_cache_path at ./loading.jl:1227 find_all_in_cache_path at ./loading.jl:1183 [inlined] #_precompilepkgs##30 at ./precompilation.jl:905 [inlined] get! at ./dict.jl:458 _precompilepkgs at ./precompilation.jl:905 #precompilepkgs#9 at ./precompilation.jl:472 unknown function (ip: 0x7ee74a300342) at (unknown file) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 precompilepkgs at ./precompilation.jl:459 __require_prelocked at ./loading.jl:2631 _require_prelocked at ./loading.jl:2466 _require_prelocked at ./loading.jl:2460 [inlined] run_extension_callbacks at ./loading.jl:1580 run_extension_callbacks at ./loading.jl:1617 run_package_callbacks at ./loading.jl:1433 #_require_search_from_serialized#884 at ./loading.jl:2107 _require_search_from_serialized at ./loading.jl:1982 jfptr__require_search_from_serialized_74556.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 __require_prelocked at ./loading.jl:2600 _require_prelocked at ./loading.jl:2466 macro expansion at ./loading.jl:2394 [inlined] macro expansion at ./lock.jl:376 [inlined] __require at ./loading.jl:2359 jfptr___require_24606.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 jl_apply at /source/src/julia.h:2336 [inlined] jl_f_invoke_in_world at /source/src/builtins.c:896 require at ./loading.jl:2335 [inlined] eval_import_path at ./module.jl:36 [inlined] eval_import_path_all at ./module.jl:60 _eval_using at ./module.jl:137 jfptr__eval_using_74179.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 jl_apply at /source/src/julia.h:2336 [inlined] do_call at /source/src/interpreter.c:124 eval_value at /source/src/interpreter.c:242 eval_stmt_value at /source/src/interpreter.c:193 [inlined] eval_body at /source/src/interpreter.c:707 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:776 jl_eval_module_expr at /source/src/toplevel.c:200 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:661 jl_toplevel_eval_flex at /source/src/toplevel.c:716 ijl_toplevel_eval at /source/src/toplevel.c:788 ijl_toplevel_eval_in at /source/src/toplevel.c:833 eval at ./boot.jl:489 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 _include at ./loading.jl:2906 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_75002.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 jl_apply at /source/src/julia.h:2336 [inlined] do_call at /source/src/interpreter.c:124 eval_value at /source/src/interpreter.c:242 eval_stmt_value at /source/src/interpreter.c:193 [inlined] eval_body at /source/src/interpreter.c:707 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:776 jl_toplevel_eval_flex at /source/src/toplevel.c:716 ijl_toplevel_eval at /source/src/toplevel.c:788 ijl_toplevel_eval_in at /source/src/toplevel.c:833 eval at ./boot.jl:489 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 _include at ./loading.jl:2906 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_75002.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 jl_apply at /source/src/julia.h:2336 [inlined] do_call at /source/src/interpreter.c:124 eval_value at /source/src/interpreter.c:242 eval_stmt_value at /source/src/interpreter.c:193 [inlined] eval_body at /source/src/interpreter.c:707 eval_body at /source/src/interpreter.c:557 eval_body at /source/src/interpreter.c:557 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:776 jl_eval_module_expr at /source/src/toplevel.c:200 [inlined] jl_toplevel_eval_flex at /source/src/toplevel.c:661 ijl_toplevel_eval at /source/src/toplevel.c:788 ijl_toplevel_eval_in at /source/src/toplevel.c:833 eval at ./boot.jl:489 jfptr_eval_14086.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 jl_apply at /source/src/julia.h:2336 [inlined] do_call at /source/src/interpreter.c:124 eval_value at /source/src/interpreter.c:242 eval_stmt_value at /source/src/interpreter.c:193 [inlined] eval_body at /source/src/interpreter.c:707 eval_body at /source/src/interpreter.c:557 eval_body at /source/src/interpreter.c:557 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:776 jl_toplevel_eval_flex at /source/src/toplevel.c:716 ijl_toplevel_eval at /source/src/toplevel.c:788 ijl_toplevel_eval_in at /source/src/toplevel.c:833 eval at ./boot.jl:489 include_string at ./loading.jl:2846 _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 _include at ./loading.jl:2906 include at ./Base.jl:310 IncludeInto at ./Base.jl:311 jfptr_IncludeInto_75002.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 jl_apply at /source/src/julia.h:2336 [inlined] do_call at /source/src/interpreter.c:124 eval_value at /source/src/interpreter.c:242 eval_stmt_value at /source/src/interpreter.c:193 [inlined] eval_body at /source/src/interpreter.c:707 jl_interpret_toplevel_thunk at /source/src/interpreter.c:898 jl_toplevel_eval_flex at /source/src/toplevel.c:776 jl_toplevel_eval_flex at /source/src/toplevel.c:716 ijl_toplevel_eval at /source/src/toplevel.c:788 ijl_toplevel_eval_in at /source/src/toplevel.c:833 eval at ./boot.jl:489 exec_options at ./client.jl:297 _start at ./client.jl:564 jfptr__start_20713.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 jl_apply at /source/src/julia.h:2336 [inlined] true_main at /source/src/jlapi.c:963 jl_repl_entrypoint at /source/src/jlapi.c:1130 main at /source/cli/loader_exe.c:58 unknown function (ip: 0x7ee7542f9249) at /lib/x86_64-linux-gnu/libc.so.6 __libc_start_main at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) unknown function (ip: 0x4010b8) at /workspace/srcdir/glibc-2.17/csu/../sysdeps/x86_64/start.S unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== Precompiling packages... ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 2 signal (10): User defined signal 1 unknown function (ip: 0x7552496fcf14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_30703.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 jl_apply at /source/src/julia.h:2336 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_30703.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 jl_apply at /source/src/julia.h:2336 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (interactive) Task 0x0000755230137580 Total snapshots: 1. Utilization: 0% ╎1 @Base/task.jl:1150 wait_forever() ╎ 1 @Base/task.jl:1216 wait() Thread 2 (default) Task 0x0000755232bfc100 Total snapshots: 1. Utilization: 0% ╎1 @Base/task.jl:1150 wait_forever() ╎ 1 @Base/task.jl:1216 wait() [255] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/NetworkDynamics/ajsEu/test/ComponentLibrary.jl:3 _ZN4llvm15ValueHandleBase12AddToUseListEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm8DenseMapINS_11AssertingVHIKNS_10BasicBlockEEESt4pairINS_26BlockFrequencyInfoImplBase9BlockNodeENS_10bfi_detail13BFICallbackVHIS2_NS_22BlockFrequencyInfoImplIS2_EEEEENS_12DenseMapInfoIS4_vEENS_6detail12DenseMapPairIS4_SD_EEE4growEj at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm22BlockFrequencyInfoImplINS_10BasicBlockEE14initializeRPOTEv at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm22BlockFrequencyInfoImplINS_10BasicBlockEE9calculateERKNS_8FunctionERKNS_21BranchProbabilityInfoERKNS_8LoopInfoE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm18BlockFrequencyInfo9calculateERKNS_8FunctionERKNS_21BranchProbabilityInfoERKNS_8LoopInfoE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm22BlockFrequencyAnalysis3runERNS_8FunctionERNS_15AnalysisManagerIS1_JEEE at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) _ZN4llvm6detail17AnalysisPassModelINS_8FunctionENS_22BlockFrequencyAnalysisENS_15AnalysisManagerIS2_JEE11InvalidatorEJEE3runERS2_RS5_ at /opt/julia/bin/../lib/julia/libLLVM.so.20.1jl (unknown line) PkgEval terminated after 2733.24s: test duration exceeded the time limit