Package evaluation of CausalGPSLC on Julia 1.13.0-DEV.636 (2bd37fbbab*) started at 2025-05-26T00:50:12.272 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.87s ################################################################################ # Installation # Installing CausalGPSLC... Resolving package versions... Installed Hiccup ────────────────────── v0.2.2 Installed libsass_jll ───────────────── v3.6.6+0 Installed FunctionalCollections ─────── v0.5.0 Installed OrderedCollections ────────── v1.8.1 Installed InlineStrings ─────────────── v1.4.3 Installed SentinelArrays ────────────── v1.4.8 Installed Revise ────────────────────── v3.7.6 Installed HypothesisTests ───────────── v0.10.13 Installed NaNMath ───────────────────── v1.1.3 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed LoweredCodeUtils ──────────── v3.3.0 Installed QuadGK ────────────────────── v2.11.2 Installed Tables ────────────────────── v1.12.0 Installed Pidfile ───────────────────── v1.3.0 Installed InverseFunctions ──────────── v0.1.17 Installed Reexport ──────────────────── v1.2.2 Installed TableTraits ───────────────── v1.0.1 Installed LaTeXStrings ──────────────── v1.4.0 Installed Missings ──────────────────── v1.2.0 Installed TZJData ───────────────────── v1.5.0+2025b Installed Preferences ───────────────── v1.4.3 Installed SortingAlgorithms ─────────── v1.2.1 Installed Registrator ───────────────── v1.9.4 Installed Crayons ───────────────────── v4.1.1 Installed Mustache ──────────────────── v1.0.20 Installed MacroTools ────────────────── v0.5.16 Installed UnPack ────────────────────── v1.0.2 Installed URIs ──────────────────────── v1.5.2 Installed DataStructures ────────────── v0.18.22 Installed Sass ──────────────────────── v0.2.0 Installed DiffResults ───────────────── v1.1.0 Installed Mux ───────────────────────── v1.0.2 Installed AbstractTrees ─────────────── v0.4.5 Installed FillArrays ────────────────── v1.13.0 Installed CodecZlib ─────────────────── v0.7.8 Installed StatsBase ─────────────────── v0.34.5 Installed OpenSSH_jll ───────────────── v9.9.2+0 Installed CausalGPSLC ───────────────── v1.0.1 Installed DataValueInterfaces ───────── v1.0.0 Installed ExprTools ─────────────────── v0.1.10 Installed CommonSubexpressions ──────── v0.3.1 Installed TimeZones ─────────────────── v1.21.3 Installed LoggingExtras ─────────────── v1.1.0 Installed Expat_jll ─────────────────── v2.6.5+0 Installed IrrationalConstants ───────── v0.2.4 Installed BitFlags ──────────────────── v0.1.9 Installed IOCapture ─────────────────── v0.2.5 Installed Scratch ───────────────────── v1.2.1 Installed HTTP ──────────────────────── v1.10.16 Installed SimpleBufferStream ────────── v1.2.0 Installed PooledArrays ──────────────── v1.4.3 Installed PDMats ────────────────────── v0.11.35 Installed TimeToLive ────────────────── v0.3.0 Installed WorkerUtilities ───────────── v1.6.1 Installed CompositionsBase ──────────── v0.1.2 Installed DocStringExtensions ───────── v0.9.4 Installed CommonSolve ───────────────── v0.2.4 Installed AliasTables ───────────────── v1.1.3 Installed ForwardDiff ───────────────── v0.10.38 Installed Roots ─────────────────────── v2.2.7 Installed SodiumSeal ────────────────── v0.1.1 Installed ConcurrentUtilities ───────── v2.5.0 Installed Combinatorics ─────────────── v1.0.3 Installed Coverage ──────────────────── v1.6.1 Installed Gen ───────────────────────── v0.4.7 Installed Rmath_jll ─────────────────── v0.4.3+0 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed ZMQ ───────────────────────── v1.4.0 Installed RegistryTools ─────────────── v2.3.0 Installed DataAPI ───────────────────── v1.16.0 Installed InvertedIndices ───────────── v1.3.1 Installed StaticArraysCore ──────────── v1.4.3 Installed StaticArrays ──────────────── v1.9.13 Installed CodeTracking ──────────────── v1.3.9 Installed ReverseDiff ───────────────── v1.16.1 Installed StringManipulation ────────── v0.4.1 Installed Requires ──────────────────── v1.3.1 Installed FunctionWrappers ──────────── v1.1.3 Installed GitHub ────────────────────── v5.9.0 Installed LogExpFunctions ───────────── v0.3.29 Installed DiffRules ─────────────────── v1.15.1 Installed JuliaInterpreter ──────────── v0.10.3 Installed Documenter ────────────────── v0.27.25 Installed Git_jll ───────────────────── v2.49.0+0 Installed JSON ──────────────────────── v0.21.4 Installed PrettyTables ──────────────── v2.4.0 Installed Parsers ───────────────────── v2.8.3 Installed AutoHashEquals ────────────── v0.2.0 Installed Distributions ─────────────── v0.25.120 Installed StatsFuns ─────────────────── v1.5.0 Installed WeakRefStrings ────────────── v1.4.2 Installed JLLWrappers ───────────────── v1.7.0 Installed ZeroMQ_jll ────────────────── v4.3.6+0 Installed DocumenterTools ───────────── v0.1.20 Installed libsodium_jll ─────────────── v1.0.21+0 Installed StructTypes ───────────────── v1.11.0 Installed DataFrames ────────────────── v1.7.0 Installed CSV ───────────────────────── v0.10.15 Installed Rmath ─────────────────────── v0.7.1 Installed ProgressBars ──────────────── v1.5.1 Installed FilePathsBase ─────────────── v0.9.24 Installed Accessors ─────────────────── v0.1.42 Installed ConstructionBase ──────────── v1.5.8 Installed Gumbo_jll ─────────────────── v0.10.2+0 Installed HypergeometricFunctions ───── v0.3.28 Installed Compat ────────────────────── v4.16.0 Installed Statistics ────────────────── v1.11.1 Installed TranscodingStreams ────────── v0.11.3 Installed ExceptionUnwrapping ───────── v0.1.11 Installed PrecompileTools ───────────── v1.3.2 Installed StatsAPI ──────────────────── v1.7.0 Installed MbedTLS ───────────────────── v1.1.9 Installed OpenSSL ───────────────────── v1.5.0 Installed AssetRegistry ─────────────── v0.1.0 Installed JSON3 ─────────────────────── v1.14.3 Installed GitForge ──────────────────── v0.4.2 Installed PtrArrays ─────────────────── v1.3.0 Installed Parameters ────────────────── v0.12.3 Installed ChainRulesCore ────────────── v1.25.1 Installed Libiconv_jll ──────────────── v1.18.0+0 Installed MbedTLS_jll ───────────────── v2.28.6+2 Installed Git ───────────────────────── v1.4.0 Installed Gumbo ─────────────────────── v0.8.3 Installed Mocking ───────────────────── v0.7.9 Installed ANSIColoredPrinters ───────── v0.0.1 Installed SpecialFunctions ──────────── v2.5.1 Installed CoverageTools ─────────────── v1.3.2 Installing 12 artifacts Installed artifact tzjdata 112.5 KiB Installed artifact Rmath 119.6 KiB Installed artifact Gumbo 703.8 KiB Installed artifact ZeroMQ 316.1 KiB Installed artifact Libiconv 1.9 MiB Installed artifact Expat 271.4 KiB Installed artifact libsodium 1.6 MiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact MbedTLS 2.1 MiB Installed artifact OpenSSH 4.2 MiB Installed artifact libsass 8.9 MiB Installed artifact Git 49.6 MiB Updating `~/.julia/environments/v1.13/Project.toml` [e033fc31] + CausalGPSLC v1.0.1 Updating `~/.julia/environments/v1.13/Manifest.toml` [a4c015fc] + ANSIColoredPrinters v0.0.1 [1520ce14] + AbstractTrees v0.4.5 [7d9f7c33] + Accessors v0.1.42 [66dad0bd] + AliasTables v1.1.3 [bf4720bc] + AssetRegistry v0.1.0 ⌅ [15f4f7f2] + AutoHashEquals v0.2.0 [d1d4a3ce] + BitFlags v0.1.9 [336ed68f] + CSV v0.10.15 [e033fc31] + CausalGPSLC v1.0.1 [d360d2e6] + ChainRulesCore v1.25.1 [da1fd8a2] + CodeTracking v1.3.9 [944b1d66] + CodecZlib v0.7.8 [861a8166] + Combinatorics v1.0.3 [38540f10] + CommonSolve v0.2.4 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [a33af91c] + CompositionsBase v0.1.2 [f0e56b4a] + ConcurrentUtilities v2.5.0 [187b0558] + ConstructionBase v1.5.8 [a2441757] + Coverage v1.6.1 [c36e975a] + CoverageTools v1.3.2 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.4 ⌅ [e30172f5] + Documenter v0.27.25 [35a29f4d] + DocumenterTools v0.1.20 [460bff9d] + ExceptionUnwrapping v0.1.11 [e2ba6199] + ExprTools v0.1.10 [48062228] + FilePathsBase v0.9.24 [1a297f60] + FillArrays v1.13.0 ⌅ [f6369f11] + ForwardDiff v0.10.38 [069b7b12] + FunctionWrappers v1.1.3 [de31a74c] + 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[14a3606d] + MozillaCACerts_jll v2025.5.20 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.0+0 [efcefdf7] + PCRE2_jll v10.44.0+1 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m` Installation completed after 31.65s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 3484.1 ms ✓ TestEnv 1 dependency successfully precompiled in 4 seconds. 25 already precompiled. Precompiling package dependencies... ERROR: LoadError: The following 1 direct dependency failed to precompile: Registrator Failed to precompile Registrator [4418983a-e44d-11e8-3aec-9789530b3b3e] to "/home/pkgeval/.julia/compiled/v1.13/Registrator/jl_79dAXE" (ProcessExited(1)). ERROR: LoadError: ZMQ.StateError("Cannot assign requested address") Stacktrace: [1] bind(socket::ZMQ.Socket, endpoint::String) @ ZMQ ~/.julia/packages/ZMQ/Lz9O7/src/socket.jl:91 [2] top-level scope @ ~/.julia/packages/ZMQ/Lz9O7/src/ZMQ.jl:85 [3] macro expansion @ ~/.julia/packages/PrecompileTools/Z8SWe/src/workloads.jl:73 [inlined] [4] macro expansion @ ~/.julia/packages/ZMQ/Lz9O7/src/ZMQ.jl:73 [inlined] [5] include(mod::Module, _path::String) @ Base ./Base.jl:309 [6] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String) @ Base ./loading.jl:3000 [7] top-level scope @ stdin:5 [8] eval(m::Module, e::Any) @ Core ./boot.jl:489 [9] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [10] include_string @ ./loading.jl:2856 [inlined] [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [12] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/ZMQ/Lz9O7/src/ZMQ.jl:3 in expression starting at stdin:5 ERROR: LoadError: Failed to precompile ZMQ [c2297ded-f4af-51ae-bb23-16f91089e4e1] to "/home/pkgeval/.julia/compiled/v1.13/ZMQ/jl_ND38Xl" (ProcessExited(1)). Stacktrace: [1] error(s::String) @ Base ./error.jl:44 [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing) @ Base ./loading.jl:3287 [3] (::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId})() @ Base ./loading.jl:2652 [4] mkpidlock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, at::String, pid::Int32; kwopts::@Kwargs{stale_age::Int64, wait::Bool}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:93 [5] #mkpidlock#7 @ /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:88 [inlined] [6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@Kwargs{stale_age::Int64}) @ FileWatching.Pidfile /opt/julia/share/julia/stdlib/v1.13/FileWatching/src/pidfile.jl:114 [7] apply_gr_kw(::NamedTuple, ::GlobalRef, ::Any, ::Vararg{Any}) @ Base ./reflection.jl:1279 [8] #invokelatest_gr#232 @ ./reflection.jl:1287 [inlined] [9] invokelatest_gr @ ./reflection.jl:1281 [inlined] [10] maybe_cachefile_lock(f::Base.var"#__require_prelocked##0#__require_prelocked##1"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64) @ Base ./loading.jl:3858 [11] maybe_cachefile_lock @ ./loading.jl:3855 [inlined] [12] __require_prelocked(pkg::Base.PkgId, env::String) @ Base ./loading.jl:2638 [13] _require_prelocked(uuidkey::Base.PkgId, env::String) @ Base ./loading.jl:2466 [14] macro expansion @ ./loading.jl:2394 [inlined] [15] macro expansion @ ./lock.jl:376 [inlined] [16] __require(into::Module, mod::Symbol) @ Base ./loading.jl:2359 [17] require @ ./loading.jl:2335 [inlined] [18] eval_import_path @ ./module.jl:36 [inlined] [19] eval_import_path_all(at::Module, path::Expr, keyword::String) @ Base ./module.jl:60 [20] _eval_using(to::Module, path::Expr) @ Base ./module.jl:137 [21] top-level scope @ ~/.julia/packages/Registrator/DCN2l/src/Messaging.jl:3 [22] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [23] top-level scope @ ~/.julia/packages/Registrator/DCN2l/src/Registrator.jl:46 [24] include(mod::Module, _path::String) @ Base ./Base.jl:309 [25] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing) @ Base ./loading.jl:3000 [26] top-level scope @ stdin:5 [27] eval(m::Module, e::Any) @ Core ./boot.jl:489 [28] include_string(mapexpr::typeof(identity), mod::Module, code::String, filename::String) @ Base ./loading.jl:2846 [29] include_string @ ./loading.jl:2856 [inlined] [30] exec_options(opts::Base.JLOptions) @ Base ./client.jl:329 [31] _start() @ Base ./client.jl:564 in expression starting at /home/pkgeval/.julia/packages/Registrator/DCN2l/src/Messaging.jl:1 in expression starting at /home/pkgeval/.julia/packages/Registrator/DCN2l/src/Registrator.jl:1 in expression starting at stdin: in expression starting at /PkgEval.jl/scripts/precompile.jl:37 Precompilation failed after 664.07s ################################################################################ # Testing # Testing CausalGPSLC Status `/tmp/jl_KAfmpa/Project.toml` [336ed68f] CSV v0.10.15 [e033fc31] CausalGPSLC v1.0.1 [a2441757] Coverage v1.6.1 [a93c6f00] DataFrames v1.7.0 [31c24e10] Distributions v0.25.120 ⌅ [e30172f5] Documenter v0.27.25 [35a29f4d] DocumenterTools v0.1.20 [de31a74c] FunctionalCollections v0.5.0 [ea4f424c] Gen v0.4.7 ⌅ [09f84164] HypothesisTests v0.10.13 ⌅ [78c3b35d] Mocking v0.7.9 [49802e3a] ProgressBars v1.5.1 [4418983a] Registrator v1.9.4 [295af30f] Revise v3.7.6 [10745b16] Statistics v1.11.1 [37e2e46d] LinearAlgebra v1.12.0 [9a3f8284] Random v1.11.0 [9e88b42a] Serialization v1.11.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_KAfmpa/Manifest.toml` [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [66dad0bd] AliasTables v1.1.3 [bf4720bc] AssetRegistry v0.1.0 ⌅ [15f4f7f2] AutoHashEquals v0.2.0 [d1d4a3ce] BitFlags v0.1.9 [336ed68f] CSV v0.10.15 [e033fc31] CausalGPSLC v1.0.1 [d360d2e6] ChainRulesCore v1.25.1 [da1fd8a2] CodeTracking v1.3.9 [944b1d66] CodecZlib v0.7.8 [861a8166] Combinatorics v1.0.3 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.5.8 [a2441757] Coverage v1.6.1 [c36e975a] CoverageTools v1.3.2 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.4 ⌅ [e30172f5] Documenter v0.27.25 [35a29f4d] DocumenterTools v0.1.20 [460bff9d] 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Testing Running tests... No object labels to assign latent confounders to (column must be titled `obj`) Assuming no latent confounding No observed covariates found in data Test Summary: | Pass Total Time Utilities | 7 7 1m50.0s No observed covariates found in data No object labels to assign latent confounders to (column must be titled `obj`) Assuming no latent confounding No object labels to assign latent confounders to (column must be titled `obj`) Assuming no latent confounding No observed covariates found in data Test Summary: | Pass Total Time Data Input | 20 20 6.2s Test Summary: | Pass Total Time conditionalITE equals 0 if intervention equals treatment | 16 16 22.5s Test Summary: | Pass Total Time conditionalSATE | 16 16 0.2s Test Summary: | Pass Total Time ITEDistributions | 16 16 50.6s Test Summary: | Pass Total Time SATEDistributions | 16 16 2.8s Test Summary: | Pass Total Time ITEsamples: toy variance should match prediction covariance noise | 24 24 2.8s Test Summary: | Pass Total Time SATEsamples: toy variance should match prediction covariance noise | 24 24 2.5s Test Summary: | Pass Total Time Kernel Functions | 15 15 5.2s Test Summary: | Pass Total Time Model Generation | 8 8 0.5s Test Summary: | Pass Total Time Latent Variables Changing | 17 17 13.1s Test Summary: | Pass Total Time gpslc meta information tests | 1 1 7.9s Test Summary: | Pass Total Time Sample Treatment Effects for Toy Examples | 6 6 0.7s No observed covariates found in data Saved mean and 90% credible intervals to tmp.csv Test Summary: | Pass Total Time summarizeEstimates | 5 5 1m06.7s No observed covariates found in data No object labels to assign latent confounders to (column must be titled `obj`) Assuming no latent confounding No object labels to assign latent confounders to (column must be titled `obj`) Assuming no latent confounding No observed covariates found in data Test Summary: | Pass Total Time gpslc accepts each variety of input | 4 4 0.4s Test Summary: | Pass Total Time I/O | 8 8 9.8s Test Summary: | Pass Total Time predictCounterfactualEffects | 1 1 2.2s Testing CausalGPSLC tests passed Testing completed after 364.27s PkgEval succeeded after 1092.9s