Package evaluation of AlgebraicDynamics on Julia 1.13.0-DEV.636 (2bd37fbbab*) started at 2025-05-26T03:37:59.909 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.5s ################################################################################ # Installation # Installing AlgebraicDynamics... Resolving package versions... Installed libaom_jll ─────────────────── v3.11.0+0 Installed Libuuid_jll ────────────────── v2.41.0+0 Installed HarfBuzz_jll ───────────────── v8.5.0+0 Installed Qt6Base_jll ────────────────── v6.8.2+1 Installed Bzip2_jll ──────────────────── v1.0.9+0 Installed Libtiff_jll ────────────────── v4.7.1+0 Installed libass_jll ─────────────────── v0.15.2+0 Installed AlgebraicInterfaces ────────── v0.1.4 Installed Graphite2_jll ──────────────── v1.3.15+0 Installed Wayland_protocols_jll ──────── v1.36.0+0 Installed Xorg_libXinerama_jll ───────── v1.1.6+0 Installed libinput_jll ───────────────── v1.18.0+0 Installed Cairo_jll ──────────────────── v1.18.4+0 Installed PlotThemes ─────────────────── v3.3.0 Installed OrderedCollections ─────────── v1.8.1 Installed OpenSpecFun_jll ────────────── v0.5.6+0 Installed Fontconfig_jll ─────────────── v2.16.0+0 Installed Xorg_libxcb_jll ────────────── v1.17.1+0 Installed Opus_jll ───────────────────── v1.3.3+0 Installed fzf_jll ────────────────────── v0.61.1+0 Installed NaNMath ────────────────────── v1.1.3 Installed Tables ─────────────────────── v1.12.0 Installed LZO_jll ────────────────────── v2.10.3+0 Installed Ogg_jll ────────────────────── v1.3.5+1 Installed Unzip ──────────────────────── v0.2.0 Installed Xorg_xcb_util_wm_jll ───────── v0.4.1+1 Installed FFMPEG ─────────────────────── v0.4.2 Installed Reexport ───────────────────── v1.2.2 Installed Preferences ────────────────── v1.4.3 Installed PreallocationTools ─────────── v0.4.24 Installed LLVMOpenMP_jll ─────────────── v18.1.8+0 Installed LERC_jll ───────────────────── v4.0.1+0 Installed Crayons ────────────────────── v4.1.1 Installed LaTeXStrings ───────────────── v1.4.0 Installed Missings ───────────────────── v1.2.0 Installed TableTraits ────────────────── v1.0.1 Installed SortingAlgorithms ──────────── v1.2.1 Installed RecursiveArrayTools ────────── v2.38.10 Installed Xorg_libICE_jll ────────────── v1.1.2+0 Installed eudev_jll ──────────────────── v3.2.9+0 Installed Format ─────────────────────── v1.3.7 Installed EpollShim_jll ──────────────── v0.0.20230411+1 Installed Grisu ──────────────────────── v1.0.2 Installed MacroTools ─────────────────── v0.5.16 Installed DataStructures ─────────────── v0.18.22 Installed MLStyle ────────────────────── v0.4.17 Installed URIs ───────────────────────── v1.5.2 Installed DiffResults ────────────────── v1.1.0 Installed Gettext_jll ────────────────── v0.21.0+0 Installed DelimitedFiles ─────────────── v1.9.1 Installed Xorg_xcb_util_jll ──────────── v0.4.0+1 Installed StatsBase ──────────────────── v0.34.5 Installed UnitfulLatexify ────────────── v1.6.4 Installed UnicodeFun ─────────────────── v0.4.1 Installed x264_jll ───────────────────── v2021.5.5+0 Installed Xorg_libXau_jll ────────────── v1.0.13+0 Installed CodecZlib ──────────────────── v0.7.8 Installed Xorg_libXfixes_jll ─────────── v6.0.1+0 Installed mtdev_jll ──────────────────── v1.1.6+0 Installed ArrayInterface ─────────────── v7.7.1 Installed GATlab ─────────────────────── v0.1.5 Installed Qt6ShaderTools_jll ─────────── v6.8.2+1 Installed Libffi_jll ─────────────────── v3.2.2+2 Installed Pixman_jll ─────────────────── v0.44.2+0 Installed LoggingExtras ──────────────── v1.1.0 Installed DataValueInterfaces ────────── v1.0.0 Installed PrettyPrint ────────────────── v0.2.0 Installed CommonSubexpressions ───────── v0.3.1 Installed libdecor_jll ───────────────── v0.2.2+0 Installed Expat_jll ──────────────────── v2.6.5+0 Installed Xorg_libXcursor_jll ────────── v1.2.4+0 Installed IrrationalConstants ────────── v0.2.4 Installed GPUArraysCore ──────────────── v0.1.5 Installed Contour ────────────────────── v0.6.3 Installed libpng_jll ─────────────────── v1.6.48+0 Installed PEG ────────────────────────── v1.0.4 Installed StableRNGs ─────────────────── v1.0.3 Installed ColorVectorSpace ───────────── v0.10.0 Installed Xorg_xcb_util_keysyms_jll ──── v0.4.0+1 Installed HTTP ───────────────────────── v1.10.16 Installed BitFlags ───────────────────── v0.1.9 Installed libfdk_aac_jll ─────────────── v2.0.3+0 Installed FFMPEG_jll ─────────────────── v4.4.4+1 Installed SimpleBufferStream ─────────── v1.2.0 Installed Scratch ────────────────────── v1.2.1 Installed Qt6Declarative_jll ─────────── v6.8.2+1 Installed StructEquality ─────────────── v2.1.0 Installed DocStringExtensions ────────── v0.9.4 Installed NameResolution ─────────────── v0.1.5 Installed ForwardDiff ────────────────── v0.10.38 Installed LightXML ───────────────────── v0.9.1 Installed JLFzf ──────────────────────── v0.1.11 Installed RelocatableFolders ─────────── v1.0.1 Installed Plots ──────────────────────── v1.40.13 Installed AliasTables ────────────────── v1.1.3 ┌ Warning: tarball content does not match git-tree-sha1 └ @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:766 Installed LabelledArrays ─────────────── v1.15.1 Installed ConcurrentUtilities ────────── v2.5.0 Installed IteratorInterfaceExtensions ── v1.0.0 Installed DataAPI ────────────────────── v1.16.0 Installed RecipesBase ────────────────── v1.3.4 Installed Combinatorics ──────────────── v1.0.3 Installed Xorg_libXi_jll ─────────────── v1.8.3+0 Installed libevdev_jll ───────────────── v1.11.0+0 Installed Wayland_jll ────────────────── v1.21.0+2 Installed Xorg_libxkbfile_jll ────────── v1.1.3+0 Installed StaticArraysCore ───────────── v1.4.3 Installed Measures ───────────────────── v0.3.2 Installed Colors ─────────────────────── v0.12.11 Installed StaticArrays ───────────────── v1.9.13 Installed Libglvnd_jll ───────────────── v1.7.1+1 Installed Latexify ───────────────────── v0.16.7 Installed Xorg_xkbcomp_jll ───────────── v1.4.7+0 Installed Requires ───────────────────── v1.3.1 Installed StringManipulation ─────────── v0.4.1 Installed Glib_jll ───────────────────── v2.82.4+0 Installed ColorTypes ─────────────────── v0.11.5 Installed LogExpFunctions ────────────── v0.3.29 Installed Xorg_xcb_util_cursor_jll ───── v0.1.4+0 Installed Vulkan_Loader_jll ──────────── v1.3.243+0 Installed DiffRules ──────────────────── v1.15.1 Installed Parsers ────────────────────── v2.8.3 Installed JSON ───────────────────────── v0.21.4 Installed PrettyTables ───────────────── v2.4.0 Installed Xorg_xcb_util_renderutil_jll ─ v0.3.9+1 Installed Xorg_libXdmcp_jll ──────────── v1.1.6+0 Installed Xorg_xkeyboard_config_jll ──── v2.44.0+0 Installed Xorg_libSM_jll ─────────────── v1.2.6+0 Installed Unitful ────────────────────── v1.22.1 Installed JLLWrappers ────────────────── v1.7.0 Installed XZ_jll ─────────────────────── v5.8.1+0 Installed x265_jll ───────────────────── v3.5.0+0 Installed RecipesPipeline ────────────── v0.6.12 Installed Pango_jll ──────────────────── v1.56.1+0 Installed StructTypes ────────────────── v1.11.0 Installed IterTools ──────────────────── v1.10.0 Installed JpegTurbo_jll ──────────────── v3.1.1+0 Installed Xorg_xtrans_jll ────────────── v1.6.0+0 Installed GR_jll ─────────────────────── v0.73.16+0 Installed Dbus_jll ───────────────────── v1.16.2+0 Installed Libmount_jll ───────────────── v2.41.0+0 Installed CompTime ───────────────────── v0.1.2 Installed JuliaVariables ─────────────── v0.2.4 Installed Compose ────────────────────── v0.9.6 Installed LinearMaps ─────────────────── v3.11.4 Installed ColorSchemes ───────────────── v3.29.0 Installed ExceptionUnwrapping ────────── v0.1.11 Installed TranscodingStreams ─────────── v0.11.3 Installed Adapt ──────────────────────── v3.7.2 Installed Compat ─────────────────────── v4.16.0 Installed Xorg_libX11_jll ────────────── v1.8.12+0 Installed SymbolicIndexingInterface ──── v0.2.2 Installed TensorCore ─────────────────── v0.1.1 Installed PlotUtils ──────────────────── v1.4.3 Installed Statistics ─────────────────── v1.11.1 Installed StatsAPI ───────────────────── v1.7.0 Installed PrecompileTools ────────────── v1.3.2 Installed Xorg_xcb_util_image_jll ────── v0.4.0+1 Installed OpenSSL ────────────────────── v1.5.0 Installed MbedTLS ────────────────────── v1.1.9 Installed xkbcommon_jll ──────────────── v1.8.1+0 Installed GLFW_jll ───────────────────── v3.4.0+2 Installed FriBidi_jll ────────────────── v1.0.17+0 Installed ChainRulesCore ─────────────── v1.25.1 Installed JSON3 ──────────────────────── v1.14.3 Installed LAME_jll ───────────────────── v3.100.2+0 Installed gperf_jll ──────────────────── v3.3.0+0 Installed Xorg_libXrender_jll ────────── v0.9.12+0 Installed libvorbis_jll ──────────────── v1.3.7+2 Installed XML2_jll ───────────────────── v2.13.6+1 Installed PtrArrays ──────────────────── v1.3.0 Installed GeneralizedGenerated ───────── v0.3.3 Installed FreeType2_jll ──────────────── v2.13.4+0 Installed Showoff ────────────────────── v1.0.3 Installed Libiconv_jll ───────────────── v1.18.0+0 Installed FixedPointNumbers ──────────── v0.8.5 Installed SpecialFunctions ───────────── v2.5.1 Installed Xorg_libXext_jll ───────────── v1.3.7+0 Installed MbedTLS_jll ────────────────── v2.28.6+2 Installed Xorg_libXrandr_jll ─────────── v1.5.5+0 Installed Qt6Wayland_jll ─────────────── v6.8.2+0 Installed Permutations ───────────────── v0.4.23 Installed Catlab ─────────────────────── v0.16.20 Installed AlgebraicDynamics ──────────── v0.2.2 Installed GR ─────────────────────────── v0.73.16 Cloning [227ef7b5-1206-438b-ac65-934d6da304b8] ACSets from https://github.com/AlgebraicJulia/ACSets.jl.git Installed ACSets ─────────────────────── v0.2.24 Installing 77 artifacts Installed artifact Vulkan_Loader 177.3 KiB Installed artifact Libffi 34.1 KiB Installed artifact Xorg_xkeyboard_config 537.5 KiB Installed artifact Xorg_xcb_util 46.4 KiB Installed artifact Libiconv 1.9 MiB Installed artifact Qt6ShaderTools 2.1 MiB Installed artifact XZ 1.5 MiB Installed artifact LERC 272.9 KiB Installed artifact Xorg_libXdmcp 67.7 KiB Installed artifact Fontconfig 522.5 KiB Installed artifact Xorg_xcb_util_image 61.6 KiB Installed artifact gperf 227.6 KiB Installed artifact Libuuid 3.5 MiB Installed artifact Libtiff 3.2 MiB Installed artifact Ogg 257.2 KiB Installed artifact xkbcommon 653.4 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact Expat 271.4 KiB Installed artifact Xorg_xcb_util_cursor 57.0 KiB Installed artifact Xorg_xcb_util_keysyms 25.8 KiB Installed artifact Libglvnd 833.5 KiB Installed artifact Pango 1.1 MiB Installed artifact Xorg_xcb_util_renderutil 39.0 KiB Installed artifact mtdev 86.4 KiB Installed artifact libdecor 44.1 KiB Installed artifact Xorg_libxkbfile 486.7 KiB Installed artifact Xorg_libXext 699.9 KiB Installed artifact Wayland_protocols 129.5 KiB Installed artifact Wayland 406.1 KiB Installed artifact Xorg_libXfixes 195.9 KiB Installed artifact HarfBuzz 1.7 MiB Installed artifact Xorg_libX11 13.9 MiB Installed artifact x265 1.1 MiB Installed artifact JpegTurbo 1.6 MiB Installed artifact libvorbis 271.0 KiB Installed artifact Xorg_libXinerama 50.1 KiB Installed artifact Qt6Declarative 21.6 MiB Installed artifact Xorg_libXrandr 354.5 KiB Installed artifact Libmount 6.4 MiB Installed artifact Xorg_libXcursor 227.1 KiB Installed artifact GR 16.0 MiB Installed artifact FFMPEG 10.6 MiB Installed artifact Xorg_libXrender 435.9 KiB Installed artifact Opus 908.1 KiB Installed artifact XML2 2.5 MiB Installed artifact Gettext 4.5 MiB Installed artifact Dbus 489.8 KiB Installed artifact Xorg_libXau 36.6 KiB Installed artifact FreeType2 1.5 MiB Installed artifact x264 2.0 MiB Installed artifact Cairo 2.2 MiB Installed artifact FriBidi 78.9 KiB Installed artifact LZO 208.9 KiB Installed artifact eudev 3.1 MiB Installed artifact LAME 292.5 KiB Installed artifact Graphite2 120.2 KiB Installed artifact GLFW 180.1 KiB Installed artifact Pixman 372.2 KiB Installed artifact Xorg_libXi 1.6 MiB Installed artifact Xorg_libxcb 2.1 MiB Installed artifact Glib 7.6 MiB Installed artifact Xorg_libSM 164.1 KiB Installed artifact Xorg_xkbcomp 274.8 KiB Installed artifact Bzip2 503.5 KiB Installed artifact libfdk_aac 2.8 MiB Installed artifact Xorg_xtrans 48.2 KiB Installed artifact libass 372.4 KiB Installed artifact Xorg_libICE 384.9 KiB Installed artifact fzf 3.3 MiB Installed artifact Xorg_xcb_util_wm 155.8 KiB Installed artifact libpng 328.3 KiB Installed artifact Qt6Base 20.6 MiB Installed artifact LLVMOpenMP 661.6 KiB Installed artifact libaom 6.4 MiB Installed artifact libinput 853.5 KiB Installed artifact libevdev 121.2 KiB Installed artifact MbedTLS 2.1 MiB Updating `~/.julia/environments/v1.13/Project.toml` [5fd6ff03] + AlgebraicDynamics v0.2.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [227ef7b5] + ACSets v0.2.24 ⌅ [79e6a3ab] + Adapt v3.7.2 [5fd6ff03] + AlgebraicDynamics v0.2.2 [23cfdc9f] + AlgebraicInterfaces v0.1.4 [66dad0bd] + AliasTables v1.1.3 ⌃ [4fba245c] + ArrayInterface v7.7.1 [d1d4a3ce] + BitFlags v0.1.9 [134e5e36] + Catlab v0.16.20 [d360d2e6] + ChainRulesCore v1.25.1 [944b1d66] + CodecZlib v0.7.8 [35d6a980] + ColorSchemes v3.29.0 ⌅ [3da002f7] + ColorTypes v0.11.5 ⌃ [c3611d14] + ColorVectorSpace v0.10.0 ⌅ [5ae59095] + Colors v0.12.11 [861a8166] + Combinatorics v1.0.3 [bbf7d656] + CommonSubexpressions v0.3.1 [0fb5dd42] + CompTime v0.1.2 [34da2185] + Compat v4.16.0 [a81c6b42] + Compose v0.9.6 [f0e56b4a] + ConcurrentUtilities v2.5.0 [d38c429a] + Contour v0.6.3 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [8bb1440f] + DelimitedFiles v1.9.1 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [ffbed154] + DocStringExtensions v0.9.4 [460bff9d] + ExceptionUnwrapping v0.1.11 [c87230d0] + FFMPEG v0.4.2 [53c48c17] + FixedPointNumbers v0.8.5 [1fa38f19] + Format v1.3.7 ⌅ [f6369f11] + ForwardDiff v0.10.38 ⌅ [f0ffcf3b] + GATlab v0.1.5 ⌅ [46192b85] + GPUArraysCore v0.1.5 [28b8d3ca] + GR v0.73.16 [6b9d7cbe] + GeneralizedGenerated v0.3.3 [42e2da0e] + Grisu v1.0.2 [cd3eb016] + HTTP v1.10.16 [92d709cd] + IrrationalConstants v0.2.4 [c8e1da08] + IterTools v1.10.0 [82899510] + IteratorInterfaceExtensions v1.0.0 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 48.43s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 5824.9 ms ✓ TestEnv 1 dependency successfully precompiled in 6 seconds. 25 already precompiled. Precompiling package dependencies... Precompilation completed after 1722.7s ################################################################################ # Testing # Testing AlgebraicDynamics Status `/tmp/jl_9uAh1T/Project.toml` [5fd6ff03] AlgebraicDynamics v0.2.2 [4f99eebe] AlgebraicPetri v0.9.2 [134e5e36] Catlab v0.16.20 ⌃ [bcd4f6db] DelayDiffEq v5.45.1 ⌃ [2ee39098] LabelledArrays v1.15.1 ⌃ [1dea7af3] OrdinaryDiffEq v6.66.0 [08abe8d2] PrettyTables v2.4.0 [8dfed614] Test v1.11.0 Status `/tmp/jl_9uAh1T/Manifest.toml` [227ef7b5] ACSets v0.2.24 ⌅ [47edcb42] ADTypes v0.2.7 [7d9f7c33] Accessors v0.1.42 ⌅ [79e6a3ab] Adapt v3.7.2 [5fd6ff03] AlgebraicDynamics v0.2.2 [23cfdc9f] AlgebraicInterfaces v0.1.4 [4f99eebe] AlgebraicPetri v0.9.2 [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 ⌃ [4fba245c] ArrayInterface v7.7.1 [4c555306] ArrayLayouts v1.11.1 [d1d4a3ce] BitFlags v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] CPUSummary v0.2.6 [134e5e36] Catlab v0.16.20 [d360d2e6] ChainRulesCore 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Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... Test Summary: | Pass Total Time UWDDynam | 55 55 2m21.9s Precompiling packages... 12229.3 ms ? SciMLBase 11830.3 ms ? LinearSolve 10311.4 ms ? DiffEqBase 11910.2 ms ? LinearSolve → LinearSolveRecursiveArrayToolsExt 11701.2 ms ? SimpleNonlinearSolve 11954.7 ms ? SimpleNonlinearSolve → SimpleNonlinearSolveStaticArraysExt 11206.3 ms ? NonlinearSolve 11299.3 ms ? OrdinaryDiffEq Info Given DelayDiffEq was explicitly requested, output will be shown live  WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 12054.3 ms ? DelayDiffEq WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. Precompiling packages... 6023.3 ms ? SciMLBase 11584.2 ms ? LinearSolve 10726.9 ms ? DiffEqBase 12527.2 ms ? LinearSolve → LinearSolveRecursiveArrayToolsExt 11884.2 ms ? SimpleNonlinearSolve 13173.4 ms ? SimpleNonlinearSolve → SimpleNonlinearSolveStaticArraysExt 11530.9 ms ? NonlinearSolve Info Given OrdinaryDiffEq was explicitly requested, output will be shown live  WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 11191.0 ms ? OrdinaryDiffEq WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. Precompiling packages... 6033.1 ms ? SciMLBase Info Given DiffEqBase was explicitly requested, output will be shown live  WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 10671.2 ms ? DiffEqBase WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl Precompiling packages... Info Given SciMLBase was explicitly requested, output will be shown live  WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. 6044.9 ms ? SciMLBase WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. ERROR: Method overwriting is not permitted during Module precompilation. Use `__precompile__(false)` to opt-out of precompilation. WARNING: Method definition islinear(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:311 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:7. WARNING: Method definition isconstant(Any) in module SciMLOperators at /home/pkgeval/.julia/packages/SciMLOperators/2UPBq/src/interface.jl:254 overwritten in module SciMLBase at /home/pkgeval/.julia/packages/SciMLBase/8XHkk/src/operators/operators.jl:8. Precompiling packages... 9907.4 ms ? SciMLBase Info Given SciMLBaseChainRulesCoreExt was explicitly requested, output will be shown live  ┌ Warning: Module SciMLBase with build ID ffffffff-ffff-ffff-92d6-85bf14b589f7 is missing from the cache. │ This may mean SciMLBase [0bca4576-84f4-4d90-8ffe-ffa030f20462] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2614 506.0 ms ? SciMLBase → SciMLBaseChainRulesCoreExt ┌ Warning: Module SciMLBase with build ID ffffffff-ffff-ffff-92d6-85bf14b589f7 is missing from the cache. │ This may mean SciMLBase [0bca4576-84f4-4d90-8ffe-ffa030f20462] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2614 Precompiling packages... 5885.5 ms ? SciMLBase 3559.0 ms ? DiffEqBase Info Given DiffEqBaseGeneralizedGeneratedExt was explicitly requested, output will be shown live  ┌ Warning: Module DiffEqBase with build ID ffffffff-ffff-ffff-39d2-9520ac606fb6 is missing from the cache. │ This may mean DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2614 583.3 ms ? DiffEqBase → DiffEqBaseGeneralizedGeneratedExt ┌ Warning: Module DiffEqBase with build ID ffffffff-ffff-ffff-39d2-9520ac606fb6 is missing from the cache. │ This may mean DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2614 Precompiling packages... 5856.5 ms ? SciMLBase 535.4 ms ? SciMLBase → SciMLBaseChainRulesCoreExt 3633.5 ms ? DiffEqBase Info Given DiffEqBaseChainRulesCoreExt was explicitly requested, output will be shown live  ┌ Warning: Module DiffEqBase with build ID ffffffff-ffff-ffff-39d2-9520ac606fb6 is missing from the cache. │ This may mean DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2614 514.4 ms ? DiffEqBase → DiffEqBaseChainRulesCoreExt ┌ Warning: Module DiffEqBase with build ID ffffffff-ffff-ffff-39d2-9520ac606fb6 is missing from the cache. │ This may mean DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2614 Precompiling packages... 5802.7 ms ? SciMLBase Info Given LinearSolve was explicitly requested, output will be shown live  WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl ┌ Warning: Module SciMLBase with build ID ffffffff-ffff-ffff-92d6-85bf14b589f7 is missing from the cache. │ This may mean SciMLBase [0bca4576-84f4-4d90-8ffe-ffa030f20462] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2614 4696.6 ms ? LinearSolve 5166.9 ms ? LinearSolve → LinearSolveRecursiveArrayToolsExt WARNING: llvmcall with integer pointers is deprecated. Use actual pointers instead, replacing i32 or i64 with i8* or ptr in initialize_task(Any) at /home/pkgeval/.julia/packages/ThreadingUtilities/AsFET/src/ThreadingUtilities.jl ┌ Warning: Module SciMLBase with build ID ffffffff-ffff-ffff-92d6-85bf14b589f7 is missing from the cache. │ This may mean SciMLBase [0bca4576-84f4-4d90-8ffe-ffa030f20462] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2614 Downloading artifact: MKL Precompiling packages... 6032.3 ms ? SciMLBase 4721.4 ms ? LinearSolve Info Given LinearSolveRecursiveArrayToolsExt was explicitly requested, output will be shown live  ┌ Warning: Module LinearSolve with build ID ffffffff-ffff-ffff-ed8b-db7d011d5c63 is missing from the cache. │ This may mean LinearSolve [7ed4a6bd-45f5-4d41-b270-4a48e9bafcae] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2614 514.6 ms ? LinearSolve → LinearSolveRecursiveArrayToolsExt ┌ Warning: Module LinearSolve with build ID ffffffff-ffff-ffff-ed8b-db7d011d5c63 is missing from the cache. │ This may mean LinearSolve [7ed4a6bd-45f5-4d41-b270-4a48e9bafcae] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2614 Precompiling packages... 5790.6 ms ? SciMLBase 3524.1 ms ? DiffEqBase Info Given SimpleNonlinearSolve was explicitly requested, output will be shown live  ┌ Warning: Module DiffEqBase with build ID ffffffff-ffff-ffff-39d2-9520ac606fb6 is missing from the cache. │ This may mean DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2614 1135.0 ms ? SimpleNonlinearSolve ┌ Warning: Module DiffEqBase with build ID ffffffff-ffff-ffff-39d2-9520ac606fb6 is missing from the cache. │ This may mean DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2614 Precompiling packages... 5988.3 ms ? SciMLBase 534.0 ms ? SciMLBase → SciMLBaseChainRulesCoreExt 3942.1 ms ? DiffEqBase 533.2 ms ? DiffEqBase → DiffEqBaseChainRulesCoreExt 1139.1 ms ? SimpleNonlinearSolve Info Given SimpleNonlinearSolveChainRulesCoreExt was explicitly requested, output will be shown live  ┌ Warning: Module DiffEqBase with build ID ffffffff-ffff-ffff-39d2-9520ac606fb6 is missing from the cache. │ This may mean DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2614 576.8 ms ? SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt ┌ Warning: Module DiffEqBase with build ID ffffffff-ffff-ffff-39d2-9520ac606fb6 is missing from the cache. │ This may mean DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2614 Precompiling packages... 5771.0 ms ? SciMLBase 3452.1 ms ? DiffEqBase 1144.4 ms ? SimpleNonlinearSolve Info Given SimpleNonlinearSolveStaticArraysExt was explicitly requested, output will be shown live  ┌ Warning: Module SimpleNonlinearSolve with build ID ffffffff-ffff-ffff-81a4-870ef4512cc7 is missing from the cache. │ This may mean SimpleNonlinearSolve [727e6d20-b764-4bd8-a329-72de5adea6c7] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2614 527.3 ms ? SimpleNonlinearSolve → SimpleNonlinearSolveStaticArraysExt ┌ Warning: Module SimpleNonlinearSolve with build ID ffffffff-ffff-ffff-81a4-870ef4512cc7 is missing from the cache. │ This may mean SimpleNonlinearSolve [727e6d20-b764-4bd8-a329-72de5adea6c7] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2614 Precompiling packages... 5691.1 ms ? SciMLBase 4637.4 ms ? LinearSolve 3559.0 ms ? DiffEqBase 530.8 ms ? LinearSolve → LinearSolveRecursiveArrayToolsExt 1156.0 ms ? SimpleNonlinearSolve 532.5 ms ? SimpleNonlinearSolve → SimpleNonlinearSolveStaticArraysExt Info Given NonlinearSolve was explicitly requested, output will be shown live  ┌ Warning: Module DiffEqBase with build ID ffffffff-ffff-ffff-39d2-9520ac606fb6 is missing from the cache. │ This may mean DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2614 732.7 ms ? NonlinearSolve ┌ Warning: Module DiffEqBase with build ID ffffffff-ffff-ffff-39d2-9520ac606fb6 is missing from the cache. │ This may mean DiffEqBase [2b5f629d-d688-5b77-993f-72d75c75574e] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2614 Precompiling packages... 5917.0 ms ? SciMLBase 526.7 ms ? SciMLBase → SciMLBaseChainRulesCoreExt 4532.6 ms ? LinearSolve 3626.5 ms ? DiffEqBase 545.9 ms ? LinearSolve → LinearSolveRecursiveArrayToolsExt 546.5 ms ? DiffEqBase → DiffEqBaseGeneralizedGeneratedExt 541.6 ms ? DiffEqBase → DiffEqBaseChainRulesCoreExt 522.7 ms ? DiffEqBase → DiffEqBaseUnitfulExt 1147.4 ms ? SimpleNonlinearSolve 599.9 ms ? SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 526.8 ms ? SimpleNonlinearSolve → SimpleNonlinearSolveStaticArraysExt 732.5 ms ? NonlinearSolve 687.9 ms ? OrdinaryDiffEq Info Given AlgebraicDynamicsOrdinaryDiffEqExt was explicitly requested, output will be shown live  ┌ Warning: Module OrdinaryDiffEq with build ID ffffffff-ffff-ffff-238d-bf563f34581f is missing from the cache. │ This may mean OrdinaryDiffEq [1dea7af3-3e70-54e6-95c3-0bf5283fa5ed] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2614 29467.6 ms ? AlgebraicDynamics → AlgebraicDynamicsOrdinaryDiffEqExt ┌ Warning: Module OrdinaryDiffEq with build ID ffffffff-ffff-ffff-238d-bf563f34581f is missing from the cache. │ This may mean OrdinaryDiffEq [1dea7af3-3e70-54e6-95c3-0bf5283fa5ed] does not support precompilation but is imported by a module that does. └ @ Base loading.jl:2614 Precompiling packages... 5805.2 ms ? SciMLBase 547.9 ms ? SciMLBase → SciMLBaseChainRulesCoreExt 4730.5 ms ? LinearSolve 3607.4 ms ? DiffEqBase 543.7 ms ? LinearSolve → LinearSolveRecursiveArrayToolsExt 555.0 ms ? DiffEqBase → DiffEqBaseGeneralizedGeneratedExt 541.3 ms ? DiffEqBase → DiffEqBaseChainRulesCoreExt 539.1 ms ? DiffEqBase → DiffEqBaseUnitfulExt 1275.6 ms ? SimpleNonlinearSolve 601.7 ms ? SimpleNonlinearSolve → SimpleNonlinearSolveChainRulesCoreExt 563.4 ms ? SimpleNonlinearSolve → SimpleNonlinearSolveStaticArraysExt 740.3 ms ? NonlinearSolve 721.9 ms ? OrdinaryDiffEq ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1823 running 0 of 2 signal (10): User defined signal 1 unknown function (ip: 0x7df8b1250f14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_30703.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 jl_apply at /source/src/julia.h:2336 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_30703.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 jl_apply at /source/src/julia.h:2336 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) ============================================================== Profile collected. A report will print at the next yield point ============================================================== ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (interactive) Task 0x00007df8246fac20 Total snapshots: 239. Utilization: 0% ╎239 @Base/task.jl:1150 wait_forever() 238╎ 239 @Base/task.jl:1216 wait() Thread 2 (default) Task 0x00007df89a7fc100 Total snapshots: 239. Utilization: 0% ╎239 @Base/task.jl:1150 wait_forever() 238╎ 239 @Base/task.jl:1216 wait() ====================================================================================== Information request received. A stacktrace will print followed by a 1.0 second profile ====================================================================================== cmd: /opt/julia/bin/julia 1 running 0 of 2 signal (10): User defined signal 1 unknown function (ip: 0x79999699af14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_30703.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 jl_apply at /source/src/julia.h:2336 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_30703.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 jl_apply at /source/src/julia.h:2336 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) 44750.2 ms ? AlgebraicDynamics → AlgebraicDynamicsOrdinaryDiffEqExt ============================================================== Profile collected. A report will print at the next yield point ============================================================== 1335.7 ms ? DelayDiffEq ┌ Warning: There were no samples collected in one or more groups. │ This may be due to idle threads, or you may need to run your │ program longer (perhaps by running it multiple times), │ or adjust the delay between samples with `Profile.init()`. └ @ Profile /opt/julia/share/julia/stdlib/v1.13/Profile/src/Profile.jl:1362 Overhead ╎ [+additional indent] Count File:Line Function ========================================================= Thread 1 (interactive) Task 0x000079997be02b30 Total snapshots: 221. Utilization: 0% ╎221 @Base/task.jl:1150 wait_forever() 220╎ 221 @Base/task.jl:1216 wait() Thread 2 (default) Task 0x000079997fdfc100 Total snapshots: 221. Utilization: 0% ╎221 @Base/task.jl:1150 wait_forever() 220╎ 221 @Base/task.jl:1216 wait() [1823] signal 15: Terminated in expression starting at /home/pkgeval/.julia/packages/AlgebraicDynamics/YqGCZ/test/dwd_dynam.jl:5 unknown function (ip: 0x7df8b1250f14) at /lib/x86_64-linux-gnu/libc.so.6 pthread_cond_wait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv_cond_wait at /workspace/srcdir/libuv/src/unix/thread.c:822 ijl_task_get_next at /source/src/scheduler.c:520 wait at ./task.jl:1216 wait_forever at ./task.jl:1150 jfptr_wait_forever_30703.1 at /opt/julia/lib/julia/sys.so (unknown line) _jl_invoke at /source/src/gf.c:3490 [inlined] ijl_apply_generic at /source/src/gf.c:3690 jl_apply at /source/src/julia.h:2336 [inlined] start_task at /source/src/task.c:1249 unknown function (ip: (nil)) at (unknown file) epoll_pwait at /lib/x86_64-linux-gnu/libc.so.6 (unknown line) uv__io_poll at /workspace/srcdir/libuv/src/unix/linux.c:1404 uv_run at /workspace/srcdir/libuv/src/unix/core.c:430 ijl_task_get_next at /source/src/scheduler.c:454 PkgEval terminated after 2746.31s: test duration exceeded the time limit