Package evaluation of MixedAnova on Julia 1.13.0-DEV.626 (157b8bc303*) started at 2025-05-23T10:35:29.724 ################################################################################ # Set-up # Installing PkgEval dependencies (TestEnv)... Set-up completed after 9.74s ################################################################################ # Installation # Installing MixedAnova... Resolving package versions... Installed CodecZstd ─────────────────── v0.8.6 Installed DiffResults ───────────────── v1.1.0 Installed MacroTools ────────────────── v0.5.16 Installed SnoopPrecompile ───────────── v1.0.3 Installed ForwardDiff ───────────────── v1.0.1 Installed MixedAnova ────────────────── v0.5.2 Installed MixedModels ───────────────── v4.8.2 Installed DataStructures ────────────── v0.18.22 Installed Rmath_jll ─────────────────── v0.5.1+0 Installed Bzip2_jll ─────────────────── v1.0.9+0 Installed Lz4_jll ───────────────────── v1.10.1+0 Installed GLM ───────────────────────── v1.8.3 Installed InlineStrings ─────────────── v1.4.3 Installed ArrowTypes ────────────────── v2.3.0 Installed FillArrays ────────────────── v1.13.0 Installed StatsModels ───────────────── v0.6.33 Installed StringViews ───────────────── v1.3.4 Installed HypergeometricFunctions ───── v0.3.28 Installed CodecZlib ─────────────────── v0.7.8 Installed ConcurrentUtilities ───────── v2.5.0 Installed AliasTables ───────────────── v1.1.3 Installed FixedEffects ──────────────── v2.4.1 Installed ExprTools ─────────────────── v0.1.10 Installed StatsBase ─────────────────── v0.33.21 Installed DataAPI ───────────────────── v1.16.0 Installed IteratorInterfaceExtensions ─ v1.0.0 Installed Compat ────────────────────── v4.16.0 Installed Combinatorics ─────────────── v1.0.3 Installed OrderedCollections ────────── v1.8.1 Installed ShiftedArrays ─────────────── v2.0.0 Installed TranscodingStreams ────────── v0.11.3 Installed TimeZones ─────────────────── v1.21.3 Installed InvertedIndices ───────────── v1.3.1 Installed StatsAPI ──────────────────── v1.7.0 Installed CommonSubexpressions ──────── v0.3.1 Installed DataValueInterfaces ───────── v1.0.0 Installed Statistics ────────────────── v1.11.1 Installed SentinelArrays ────────────── v1.4.8 Installed ProgressMeter ─────────────── v1.10.4 Installed PrecompileTools ───────────── v1.3.2 Installed StaticArraysCore ──────────── v1.4.3 Installed CodecBzip2 ────────────────── v0.8.5 Installed IrrationalConstants ───────── v0.2.4 Installed NaNMath ───────────────────── v1.1.3 Installed QuadGK ────────────────────── v2.11.2 Installed StringManipulation ────────── v0.4.1 Installed FixedEffectModels ─────────── v1.8.0 Installed StaticArrays ──────────────── v1.9.13 Installed OpenSpecFun_jll ───────────── v0.5.6+0 Installed BitIntegers ───────────────── v0.3.5 Installed GroupedArrays ─────────────── v0.3.3 Installed JSON3 ─────────────────────── v1.14.2 Installed DiffRules ─────────────────── v1.15.1 Installed LogExpFunctions ───────────── v0.3.29 Installed Rmath ─────────────────────── v0.8.0 Installed JSON ──────────────────────── v0.21.4 Installed Parsers ───────────────────── v2.8.3 Installed StatsFuns ─────────────────── v1.5.0 Installed PrettyTables ──────────────── v2.4.0 Installed Tables ────────────────────── v1.12.0 Installed Distributions ─────────────── v0.25.120 Installed PtrArrays ─────────────────── v1.3.0 Installed EnumX ─────────────────────── v1.0.5 Installed Vcov ──────────────────────── v0.7.1 Installed Reexport ──────────────────── v1.2.2 Installed Scratch ───────────────────── v1.2.1 Installed SpecialFunctions ──────────── v2.5.1 Installed DataFrames ────────────────── v1.7.0 Installed MutableArithmetics ────────── v1.6.4 Installed Missings ──────────────────── v1.2.0 Installed PooledArrays ──────────────── v1.4.3 Installed BenchmarkTools ────────────── v1.6.0 Installed Preferences ───────────────── v1.4.3 Installed JLLWrappers ───────────────── v1.7.0 Installed TableTraits ───────────────── v1.0.1 Installed TZJData ───────────────────── v1.5.0+2025b Installed LaTeXStrings ──────────────── v1.4.0 Installed SortingAlgorithms ─────────── v1.2.1 Installed PDMats ────────────────────── v0.11.35 Installed NLopt ─────────────────────── v0.6.5 Installed Crayons ───────────────────── v4.1.1 Installed StructTypes ───────────────── v1.11.0 Installed NLopt_jll ─────────────────── v2.10.0+0 Installed Mocking ───────────────────── v0.8.1 Installed MathProgBase ──────────────── v0.7.8 Installed CodecLz4 ──────────────────── v0.4.6 Installed DocStringExtensions ───────── v0.9.4 Installed Arrow ─────────────────────── v2.8.0 Installed MathOptInterface ──────────── v1.40.1 Installing 6 artifacts Installed artifact Rmath 121.9 KiB Installed artifact NLopt 322.7 KiB Installed artifact Lz4 239.7 KiB Installed artifact Bzip2 503.5 KiB Installed artifact OpenSpecFun 194.9 KiB Installed artifact tzjdata 112.5 KiB Updating `~/.julia/environments/v1.13/Project.toml` [72e9ff3b] + MixedAnova v0.5.2 Updating `~/.julia/environments/v1.13/Manifest.toml` [66dad0bd] + AliasTables v1.1.3 [69666777] + Arrow v2.8.0 [31f734f8] + ArrowTypes v2.3.0 [6e4b80f9] + BenchmarkTools v1.6.0 [c3b6d118] + BitIntegers v0.3.5 [523fee87] + CodecBzip2 v0.8.5 [5ba52731] + CodecLz4 v0.4.6 [944b1d66] + CodecZlib v0.7.8 [6b39b394] + CodecZstd v0.8.6 [861a8166] + Combinatorics v1.0.3 [bbf7d656] + CommonSubexpressions v0.3.1 [34da2185] + Compat v4.16.0 [f0e56b4a] + ConcurrentUtilities v2.5.0 [a8cc5b0e] + Crayons v4.1.1 [9a962f9c] + DataAPI v1.16.0 [a93c6f00] + DataFrames v1.7.0 [864edb3b] + DataStructures v0.18.22 [e2d170a0] + DataValueInterfaces v1.0.0 [163ba53b] + DiffResults v1.1.0 [b552c78f] + DiffRules v1.15.1 [31c24e10] + Distributions v0.25.120 [ffbed154] + DocStringExtensions v0.9.4 [4e289a0a] + EnumX v1.0.5 [e2ba6199] + ExprTools v0.1.10 [1a297f60] + FillArrays v1.13.0 ⌃ [9d5cd8c9] + FixedEffectModels v1.8.0 [c8885935] + FixedEffects v2.4.1 [f6369f11] + ForwardDiff v1.0.1 ⌃ [38e38edf] + GLM v1.8.3 [6407cd72] + GroupedArrays v0.3.3 [34004b35] + HypergeometricFunctions v0.3.28 [842dd82b] + InlineStrings v1.4.3 [41ab1584] + InvertedIndices v1.3.1 [92d709cd] + IrrationalConstants v0.2.4 [82899510] + IteratorInterfaceExtensions v1.0.0 [692b3bcd] + JLLWrappers v1.7.0 [682c06a0] + JSON v0.21.4 [0f8b85d8] + JSON3 v1.14.2 [b964fa9f] + LaTeXStrings v1.4.0 [2ab3a3ac] + LogExpFunctions v0.3.29 [1914dd2f] + MacroTools v0.5.16 [b8f27783] + MathOptInterface v1.40.1 [fdba3010] + MathProgBase v0.7.8 [e1d29d7a] + Missings v1.2.0 [72e9ff3b] + MixedAnova v0.5.2 ⌃ [ff71e718] + MixedModels v4.8.2 [78c3b35d] + Mocking v0.8.1 [d8a4904e] + MutableArithmetics v1.6.4 ⌅ [76087f3c] + NLopt v0.6.5 [77ba4419] + NaNMath v1.1.3 [bac558e1] + OrderedCollections v1.8.1 [90014a1f] + PDMats v0.11.35 [69de0a69] + Parsers v2.8.3 [2dfb63ee] + PooledArrays v1.4.3 [aea7be01] + PrecompileTools v1.3.2 [21216c6a] + Preferences v1.4.3 [08abe8d2] + PrettyTables v2.4.0 [92933f4c] + ProgressMeter v1.10.4 [43287f4e] + PtrArrays v1.3.0 [1fd47b50] + QuadGK v2.11.2 [189a3867] + Reexport v1.2.2 [79098fc4] + Rmath v0.8.0 [6c6a2e73] + Scratch v1.2.1 [91c51154] + SentinelArrays v1.4.8 [1277b4bf] + ShiftedArrays v2.0.0 [66db9d55] + SnoopPrecompile v1.0.3 [a2af1166] + SortingAlgorithms v1.2.1 [276daf66] + SpecialFunctions v2.5.1 [90137ffa] + StaticArrays v1.9.13 [1e83bf80] + StaticArraysCore v1.4.3 [10745b16] + Statistics v1.11.1 [82ae8749] + StatsAPI v1.7.0 ⌅ [2913bbd2] + StatsBase v0.33.21 [4c63d2b9] + StatsFuns v1.5.0 ⌅ [3eaba693] + StatsModels v0.6.33 [892a3eda] + StringManipulation v0.4.1 [354b36f9] + StringViews v1.3.4 [856f2bd8] + StructTypes v1.11.0 [dc5dba14] + TZJData v1.5.0+2025b [3783bdb8] + TableTraits v1.0.1 [bd369af6] + Tables v1.12.0 [f269a46b] + TimeZones v1.21.3 [3bb67fe8] + TranscodingStreams v0.11.3 ⌅ [ec2bfdc2] + Vcov v0.7.1 [6e34b625] + Bzip2_jll v1.0.9+0 [5ced341a] + Lz4_jll v1.10.1+0 [079eb43e] + NLopt_jll v2.10.0+0 [efe28fd5] + OpenSpecFun_jll v0.5.6+0 [f50d1b31] + Rmath_jll v0.5.1+0 [0dad84c5] + ArgTools v1.1.2 [56f22d72] + Artifacts v1.11.0 [2a0f44e3] + Base64 v1.11.0 [ade2ca70] + Dates v1.11.0 [8ba89e20] + Distributed v1.11.0 [f43a241f] + Downloads v1.7.0 [7b1f6079] + FileWatching v1.11.0 [9fa8497b] + Future v1.11.0 [b77e0a4c] + InteractiveUtils v1.11.0 [ac6e5ff7] + JuliaSyntaxHighlighting v1.12.0 [4af54fe1] + LazyArtifacts v1.11.0 [b27032c2] + LibCURL v0.6.4 [76f85450] + LibGit2 v1.11.0 [8f399da3] + Libdl v1.11.0 [37e2e46d] + LinearAlgebra v1.12.0 [56ddb016] + Logging v1.11.0 [d6f4376e] + Markdown v1.11.0 [a63ad114] + Mmap v1.11.0 [ca575930] + NetworkOptions v1.3.0 [44cfe95a] + Pkg v1.13.0 [de0858da] + Printf v1.11.0 [9abbd945] + Profile v1.11.0 [3fa0cd96] + REPL v1.11.0 [9a3f8284] + Random v1.11.0 [ea8e919c] + SHA v0.7.0 [9e88b42a] + Serialization v1.11.0 [6462fe0b] + Sockets v1.11.0 [2f01184e] + SparseArrays v1.12.0 [f489334b] + StyledStrings v1.11.0 [4607b0f0] + SuiteSparse [fa267f1f] + TOML v1.0.3 [a4e569a6] + Tar v1.10.0 [8dfed614] + Test v1.11.0 [cf7118a7] + UUIDs v1.11.0 [4ec0a83e] + Unicode v1.11.0 [e66e0078] + CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] + LibCURL_jll v8.12.1+1 [e37daf67] + LibGit2_jll v1.9.0+0 [29816b5a] + LibSSH2_jll v1.11.3+1 [14a3606d] + MozillaCACerts_jll v2025.2.25 [4536629a] + OpenBLAS_jll v0.3.29+0 [05823500] + OpenLibm_jll v0.8.5+0 [458c3c95] + OpenSSL_jll v3.5.0+0 [bea87d4a] + SuiteSparse_jll v7.10.1+0 [83775a58] + Zlib_jll v1.3.1+2 [3161d3a3] + Zstd_jll v1.5.7+1 [8e850b90] + libblastrampoline_jll v5.12.0+0 [8e850ede] + nghttp2_jll v1.65.0+0 [3f19e933] + p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m` Installation completed after 9.07s ################################################################################ # Precompilation # Precompiling PkgEval dependencies... Precompiling packages... 4731.4 ms ✓ TestEnv 1 dependency successfully precompiled in 5 seconds. 25 already precompiled. Precompiling package dependencies... Precompilation completed after 749.27s ################################################################################ # Testing # Testing MixedAnova Status `/tmp/jl_b42xiz/Project.toml` [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v0.10.8 [a93c6f00] DataFrames v1.7.0 ⌃ [38e38edf] GLM v1.8.3 [72e9ff3b] MixedAnova v0.5.2 ⌃ [ff71e718] MixedModels v4.8.2 [ce6b1742] RDatasets v0.7.7 [8dfed614] Test v1.11.0 Status `/tmp/jl_b42xiz/Manifest.toml` [66dad0bd] AliasTables v1.1.3 [69666777] Arrow v2.8.0 [31f734f8] ArrowTypes v2.3.0 [6e4b80f9] BenchmarkTools v1.6.0 [c3b6d118] BitIntegers v0.3.5 [336ed68f] CSV v0.10.15 [324d7699] CategoricalArrays v0.10.8 [523fee87] CodecBzip2 v0.8.5 [5ba52731] CodecLz4 v0.4.6 [944b1d66] CodecZlib v0.7.8 [6b39b394] CodecZstd v0.8.6 [861a8166] Combinatorics v1.0.3 [bbf7d656] CommonSubexpressions v0.3.1 [34da2185] Compat v4.16.0 [f0e56b4a] ConcurrentUtilities v2.5.0 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [a93c6f00] DataFrames v1.7.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [31c24e10] Distributions v0.25.120 [ffbed154] DocStringExtensions v0.9.4 [4e289a0a] EnumX v1.0.5 [e2ba6199] ExprTools v0.1.10 [5789e2e9] FileIO v1.17.0 [48062228] FilePathsBase v0.9.24 [1a297f60] FillArrays v1.13.0 ⌃ [9d5cd8c9] FixedEffectModels v1.8.0 [c8885935] FixedEffects v2.4.1 [f6369f11] ForwardDiff v1.0.1 ⌃ [38e38edf] GLM v1.8.3 [6407cd72] GroupedArrays v0.3.3 [34004b35] HypergeometricFunctions v0.3.28 [842dd82b] InlineStrings v1.4.3 [41ab1584] InvertedIndices v1.3.1 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON v0.21.4 [0f8b85d8] JSON3 v1.14.2 [b964fa9f] LaTeXStrings v1.4.0 [2ab3a3ac] LogExpFunctions v0.3.29 [1914dd2f] MacroTools v0.5.16 [b8f27783] MathOptInterface v1.40.1 [fdba3010] MathProgBase v0.7.8 [e1d29d7a] Missings v1.2.0 [72e9ff3b] MixedAnova v0.5.2 ⌃ [ff71e718] MixedModels v4.8.2 [78c3b35d] Mocking v0.8.1 [d8a4904e] MutableArithmetics v1.6.4 ⌅ [76087f3c] NLopt v0.6.5 [77ba4419] NaNMath v1.1.3 [bac558e1] OrderedCollections v1.8.1 [90014a1f] PDMats v0.11.35 [69de0a69] Parsers v2.8.3 [2dfb63ee] PooledArrays v1.4.3 [aea7be01] PrecompileTools v1.3.2 [21216c6a] Preferences v1.4.3 [08abe8d2] PrettyTables v2.4.0 [92933f4c] ProgressMeter v1.10.4 [43287f4e] PtrArrays v1.3.0 [1fd47b50] QuadGK v2.11.2 ⌅ [df47a6cb] RData v0.8.3 [ce6b1742] RDatasets v0.7.7 [189a3867] Reexport v1.2.2 [ae029012] Requires v1.3.1 [79098fc4] Rmath v0.8.0 [6c6a2e73] Scratch v1.2.1 [91c51154] SentinelArrays v1.4.8 [1277b4bf] ShiftedArrays v2.0.0 [66db9d55] SnoopPrecompile v1.0.3 [a2af1166] SortingAlgorithms v1.2.1 [276daf66] SpecialFunctions v2.5.1 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16] Statistics v1.11.1 [82ae8749] StatsAPI v1.7.0 ⌅ [2913bbd2] StatsBase v0.33.21 [4c63d2b9] StatsFuns v1.5.0 ⌅ [3eaba693] StatsModels v0.6.33 [892a3eda] 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[a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.3.0 [44cfe95a] Pkg v1.13.0 [de0858da] Printf v1.11.0 [9abbd945] Profile v1.11.0 [3fa0cd96] REPL v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.12.0 [f489334b] StyledStrings v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.3.0+1 [deac9b47] LibCURL_jll v8.12.1+1 [e37daf67] LibGit2_jll v1.9.0+0 [29816b5a] LibSSH2_jll v1.11.3+1 [14a3606d] MozillaCACerts_jll v2025.2.25 [4536629a] OpenBLAS_jll v0.3.29+0 [05823500] OpenLibm_jll v0.8.5+0 [458c3c95] OpenSSL_jll v3.5.0+0 [bea87d4a] SuiteSparse_jll v7.10.1+0 [83775a58] Zlib_jll v1.3.1+2 [3161d3a3] Zstd_jll v1.5.7+1 [8e850b90] libblastrampoline_jll v5.12.0+0 [8e850ede] nghttp2_jll v1.65.0+0 [3f19e933] p7zip_jll v17.5.0+2 Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. Testing Running tests... WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Method definition coefnames(MixedAnova.AnovaResult{T, MixedAnova.FTest, N} where N) where {T<:(StatsModels.TableRegressionModel{var"#s16", T} where T where var"#s16"<:Union{GLM.GeneralizedLinearModel{G, L} where L<:GLM.LinPred where G<:(GLM.GlmResp{V, D, L} where L<:GLM.Link where D<:(Distributions.Distribution{Distributions.ArrayLikeVariate{0}, S} where S<:Distributions.ValueSupport) where V<:(AbstractArray{T, 1} where T<:AbstractFloat)), GLM.LinearModel{L, T} where T<:GLM.LinPred where L<:(GLM.LmResp{V} where V<:(AbstractArray{T, 1} where T<:AbstractFloat))})} in module MixedAnova at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/GLM/io.jl:3 overwritten at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/GLM/io.jl:12. WARNING: Method definition coefnames(StatsModels.TableRegressionModel{var"#s16", T} where T where var"#s16"<:Union{GLM.GeneralizedLinearModel{G, L} where L<:GLM.LinPred where G<:(GLM.GlmResp{V, D, L} where L<:GLM.Link where D<:(Distributions.Distribution{Distributions.ArrayLikeVariate{0}, S} where S<:Distributions.ValueSupport) where V<:(AbstractArray{T, 1} where T<:AbstractFloat)), GLM.LinearModel{L, T} where T<:GLM.LinPred where L<:(GLM.LmResp{V} where V<:(AbstractArray{T, 1} where T<:AbstractFloat))}, Base.Val{:anova}) in module MixedAnova at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/GLM/io.jl:9 overwritten at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/GLM/io.jl:18. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Wrapping `Vararg` directly in UnionAll is deprecated (wrap the tuple instead). You may need to write `f(x::Vararg{T})` rather than `f(x::Vararg{<:T})` or `f(x::Vararg{T}) where T` instead of `f(x::Vararg{T} where T)`. To make this warning an error, and hence obtain a stack trace, use `julia --depwarn=error`. WARNING: Method definition formula(StatsModels.TableRegressionModel{M, T} where T where M) in module MixedAnova at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:4 overwritten at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/FixedEffectModels/fit.jl:4. WARNING: Method definition width(StatsModels.FunctionTerm{Forig, Fanon, Names} where Names where Fanon where Forig) in module StatsModels at /home/pkgeval/.julia/packages/StatsModels/fK0P3/src/terms.jl:128 overwritten in module MixedAnova at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/FixedEffectModels/fit.jl:11. WARNING: Method definition dof(FixedEffectModels.FixedEffectModel) in module FixedEffectModels at /home/pkgeval/.julia/packages/FixedEffectModels/xGOsh/src/FixedEffectModel.jl:58 overwritten in module MixedAnova at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/src/FixedEffectModels/fit.jl:14. ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:121 [inlined] └ @ Core ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:121 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:121 [inlined] └ @ Core ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:121 ┌ Warning: Could not check whether models are nested: results may not be meaningful └ @ MixedAnova ~/.julia/packages/MixedAnova/wGwIh/src/GLM/anova.jl:137 ┌ Warning: Could not check whether models are nested: results may not be meaningful └ @ MixedAnova ~/.julia/packages/MixedAnova/wGwIh/src/api.jl:102 ┌ Warning: Starting from GLM.jl 1.8, null model is defined as having no predictor at all when a model without an intercept is passed. └ @ GLM ~/.julia/packages/GLM/6ycOV/src/lm.jl:185 ┌ Warning: Starting from GLM.jl 1.8, null model is defined as having no predictor at all when a model without an intercept is passed. └ @ GLM ~/.julia/packages/GLM/6ycOV/src/lm.jl:185 ┌ Warning: Could not check whether models are nested: results may not be meaningful └ @ MixedAnova ~/.julia/packages/MixedAnova/wGwIh/src/GLM/anova.jl:137 Test Summary: | Pass Total Time LinearModel | 22 22 1m46.9s ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:121 [inlined] └ @ Core ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:121 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:121 [inlined] └ @ Core ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:121 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:121 [inlined] └ @ Core ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:121 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:121 [inlined] └ @ Core ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:121 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:121 [inlined] └ @ Core ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:121 Poisson regression: Error During Test at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:147 Got exception outside of a @test BoundsError: attempt to access 0×0 Matrix{Float64} at index [1:18, 1:18] Stacktrace: [1] throw_boundserror(A::Matrix{Float64}, I::Tuple{UnitRange{Int64}, UnitRange{Int64}}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:697 [inlined] [3] view @ ./subarray.jl:214 [inlined] [4] delbeta!(p::GLM.DensePredChol{Float64, LinearAlgebra.CholeskyPivoted{Float64, Matrix{Float64}, Vector{Int64}}}, r::Vector{Float64}, wt::Vector{Float64}) @ GLM ~/.julia/packages/GLM/6ycOV/src/linpred.jl:183 [5] _fit!(m::GeneralizedLinearModel{GLM.GlmResp{Vector{Float64}, Poisson{Float64}, LogLink}, GLM.DensePredChol{Float64, LinearAlgebra.CholeskyPivoted{Float64, Matrix{Float64}, Vector{Int64}}}}, verbose::Bool, maxiter::Int64, minstepfac::Float64, atol::Float64, rtol::Float64, start::Nothing) @ GLM ~/.julia/packages/GLM/6ycOV/src/glmfit.jl:372 [6] #fit!#22 @ ~/.julia/packages/GLM/6ycOV/src/glmfit.jl:462 [inlined] [7] fit! @ ~/.julia/packages/GLM/6ycOV/src/glmfit.jl:429 [inlined] [8] fit(::Type{GeneralizedLinearModel}, X::Matrix{Float64}, y::Vector{Int64}, d::Poisson{Float64}, l::LogLink; dropcollinear::Bool, dofit::Bool, wts::Vector{Float64}, offset::Vector{Float64}, fitargs::@Kwargs{}) @ GLM ~/.julia/packages/GLM/6ycOV/src/glmfit.jl:584 [9] (::MixedAnova.var"#85#86"{@Kwargs{}, StatsModels.TableRegressionModel{GeneralizedLinearModel{GLM.GlmResp{Vector{Float64}, Poisson{Float64}, LogLink}, GLM.DensePredChol{Float64, LinearAlgebra.CholeskyPivoted{Float64, Matrix{Float64}, Vector{Int64}}}}, Matrix{Float64}}, Vector{Float64}, Vector{Float64}, LogLink, Poisson{Float64}})(id::Int64) @ MixedAnova ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:308 [10] iterate @ ./generator.jl:48 [inlined] [11] _collect(c::Vector{Int64}, itr::Base.Generator{Vector{Int64}, MixedAnova.var"#85#86"{@Kwargs{}, StatsModels.TableRegressionModel{GeneralizedLinearModel{GLM.GlmResp{Vector{Float64}, Poisson{Float64}, LogLink}, GLM.DensePredChol{Float64, LinearAlgebra.CholeskyPivoted{Float64, Matrix{Float64}, Vector{Int64}}}}, Matrix{Float64}}, Vector{Float64}, Vector{Float64}, LogLink, Poisson{Float64}}}, ::Base.EltypeUnknown, isz::Base.HasShape{1}) @ Base ./array.jl:810 [12] collect_similar @ ./array.jl:732 [inlined] [13] map @ ./abstractarray.jl:3366 [inlined] [14] #nestedmodels#83 @ ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:304 [inlined] [15] nestedmodels(::Type{GeneralizedLinearModel}, formula::FormulaTerm{Term, Tuple{Term, Term, InteractionTerm{Tuple{Term, Term}}}}, data::DataFrame, distr::Poisson{Float64}, link::LogLink; null::Bool, kwargs::@Kwargs{}) @ MixedAnova ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:316 [16] nestedmodels @ ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:316 [inlined] [17] nestedmodels(::Type{GeneralizedLinearModel}, formula::FormulaTerm{Term, Tuple{Term, Term, InteractionTerm{Tuple{Term, Term}}}}, data::DataFrame, distr::Poisson{Float64}) @ MixedAnova ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:316 [18] top-level scope @ ~/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:124 [19] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1833 [inlined] [20] macro expansion @ ~/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:148 [inlined] [21] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1833 [inlined] [22] macro expansion @ ~/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:148 [inlined] [23] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [24] top-level scope @ none:6 [25] eval(m::Module, e::Any) @ Core ./boot.jl:489 [26] exec_options(opts::Base.JLOptions) @ Base ./client.jl:297 [27] _start() @ Base ./client.jl:564 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:121 [inlined] └ @ Core ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:121 Logit regression: Error During Test at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:159 Got exception outside of a @test BoundsError: attempt to access 0×0 Matrix{Float64} at index [1:132943402233744, 1:132943402233744] Stacktrace: [1] throw_boundserror(A::Matrix{Float64}, I::Tuple{UnitRange{Int64}, UnitRange{Int64}}) @ Base ./essentials.jl:15 [2] checkbounds @ ./abstractarray.jl:697 [inlined] [3] view @ ./subarray.jl:214 [inlined] [4] delbeta!(p::GLM.DensePredChol{Float64, LinearAlgebra.CholeskyPivoted{Float64, Matrix{Float64}, Vector{Int64}}}, r::Vector{Float64}, wt::Vector{Float64}) @ GLM ~/.julia/packages/GLM/6ycOV/src/linpred.jl:183 [5] _fit!(m::GeneralizedLinearModel{GLM.GlmResp{Vector{Float64}, Binomial{Float64}, LogitLink}, GLM.DensePredChol{Float64, LinearAlgebra.CholeskyPivoted{Float64, Matrix{Float64}, Vector{Int64}}}}, verbose::Bool, maxiter::Int64, minstepfac::Float64, atol::Float64, rtol::Float64, start::Nothing) @ GLM ~/.julia/packages/GLM/6ycOV/src/glmfit.jl:372 [6] #fit!#22 @ ~/.julia/packages/GLM/6ycOV/src/glmfit.jl:462 [inlined] [7] fit! @ ~/.julia/packages/GLM/6ycOV/src/glmfit.jl:429 [inlined] [8] fit(::Type{GeneralizedLinearModel}, X::Matrix{Float64}, y::BitVector, d::Binomial{Float64}, l::LogitLink; dropcollinear::Bool, dofit::Bool, wts::Vector{Float64}, offset::Vector{Float64}, fitargs::@Kwargs{}) @ GLM ~/.julia/packages/GLM/6ycOV/src/glmfit.jl:584 [9] (::MixedAnova.var"#85#86"{@Kwargs{}, StatsModels.TableRegressionModel{GeneralizedLinearModel{GLM.GlmResp{Vector{Float64}, Binomial{Float64}, LogitLink}, GLM.DensePredChol{Float64, LinearAlgebra.CholeskyPivoted{Float64, Matrix{Float64}, Vector{Int64}}}}, Matrix{Float64}}, Vector{Float64}, Vector{Float64}, LogitLink, Binomial{Float64}})(id::Int64) @ MixedAnova ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:308 [10] iterate @ ./generator.jl:48 [inlined] [11] _collect(c::Vector{Int64}, itr::Base.Generator{Vector{Int64}, MixedAnova.var"#85#86"{@Kwargs{}, StatsModels.TableRegressionModel{GeneralizedLinearModel{GLM.GlmResp{Vector{Float64}, Binomial{Float64}, LogitLink}, GLM.DensePredChol{Float64, LinearAlgebra.CholeskyPivoted{Float64, Matrix{Float64}, Vector{Int64}}}}, Matrix{Float64}}, Vector{Float64}, Vector{Float64}, LogitLink, Binomial{Float64}}}, ::Base.EltypeUnknown, isz::Base.HasShape{1}) @ Base ./array.jl:810 [12] collect_similar @ ./array.jl:732 [inlined] [13] map @ ./abstractarray.jl:3366 [inlined] [14] #nestedmodels#83 @ ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:304 [inlined] [15] nestedmodels(trm::StatsModels.TableRegressionModel{GeneralizedLinearModel{GLM.GlmResp{Vector{Float64}, Binomial{Float64}, LogitLink}, GLM.DensePredChol{Float64, LinearAlgebra.CholeskyPivoted{Float64, Matrix{Float64}, Vector{Int64}}}}, Matrix{Float64}}) @ MixedAnova ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:295 [16] top-level scope @ ~/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:124 [17] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1833 [inlined] [18] macro expansion @ ~/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:160 [inlined] [19] macro expansion @ /opt/julia/share/julia/stdlib/v1.13/Test/src/Test.jl:1833 [inlined] [20] macro expansion @ ~/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:162 [inlined] [21] include(mapexpr::Function, mod::Module, _path::String) @ Base ./Base.jl:310 [22] top-level scope @ none:6 [23] eval(m::Module, e::Any) @ Core ./boot.jl:489 [24] exec_options(opts::Base.JLOptions) @ Base ./client.jl:297 [25] _start() @ Base ./client.jl:564 ┌ Warning: Could not check whether models are nested: results may not be meaningful └ @ MixedAnova ~/.julia/packages/MixedAnova/wGwIh/src/api.jl:102 ┌ Warning: `cholesky!(A::RealHermSymComplexHerm{<:Real}, ::Val{true}; kwargs...)` is deprecated, use `cholesky!(A, RowMaximum(); kwargs...)` instead. │ caller = updatechol at fit.jl:121 [inlined] └ @ Core ~/.julia/packages/MixedAnova/wGwIh/src/GLM/fit.jl:121 Test Summary: | Pass Error Total Time GeneralizedLinearModel | 24 2 26 1m25.0s Gamma regression | 6 6 17.1s NegativeBinomial regression | 8 8 13.5s Poisson regression | 1 1 16.9s Logit regression | 1 1 11.9s Probit regression | 5 5 19.9s InverseGaussian regression | 5 5 5.7s RNG of the outermost testset: Random.Xoshiro(0x1872e5067950930b, 0x78b8f17debf70e82, 0x3c61e4c7eaff34f7, 0x0bcacb0b73472b16, 0x0312beb7fb23f4fe) ERROR: LoadError: Some tests did not pass: 24 passed, 0 failed, 2 errored, 0 broken. in expression starting at /home/pkgeval/.julia/packages/MixedAnova/wGwIh/test/runtests.jl:123 Testing failed after 391.68s ERROR: LoadError: Package MixedAnova errored during testing Stacktrace: [1] pkgerror(msg::String) @ Pkg.Types /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Types.jl:68 [2] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, julia_args::Cmd, test_args::Cmd, test_fn::Nothing, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool) @ Pkg.Operations /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2421 [3] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/Operations.jl:2276 [inlined] [4] test(ctx::Pkg.Types.Context, pkgs::Vector{PackageSpec}; coverage::Bool, test_fn::Nothing, julia_args::Cmd, test_args::Cmd, force_latest_compatible_version::Bool, allow_earlier_backwards_compatible_versions::Bool, allow_reresolve::Bool, kwargs::@Kwargs{io::IOContext{IO}}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:498 [5] test(pkgs::Vector{PackageSpec}; io::IOContext{IO}, kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:164 [6] test(pkgs::Vector{String}; kwargs::@Kwargs{julia_args::Cmd}) @ Pkg.API /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [7] test @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:152 [inlined] [8] #test#81 @ /opt/julia/share/julia/stdlib/v1.13/Pkg/src/API.jl:151 [inlined] [9] top-level scope @ /PkgEval.jl/scripts/evaluate.jl:219 [10] include(mod::Module, _path::String) @ Base ./Base.jl:309 [11] exec_options(opts::Base.JLOptions) @ Base ./client.jl:331 [12] _start() @ Base ./client.jl:564 in expression starting at /PkgEval.jl/scripts/evaluate.jl:210 PkgEval failed after 1182.13s: package tests unexpectedly errored