FastQCFastQC Report
Tue 14 Jan 2025
4DNFIMAN9LHL.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename4DNFIMAN9LHL.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24451875
Sequences flagged as poor quality0
Sequence length24
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGACGCGGTGAACCGACAGAATC1402640.57363290136237No Hit
CAGACGCGCGGTATTTGCATGTTG959890.3925629425146333No Hit
CAGACGCGGACCAGGTGACCTGGT536930.21958643253329244No Hit
CAGACGCGCTGTATTGAATCCGTT466560.19080745341614908No Hit
CAGACGCGGCGAGGTTGGCTTTAA400490.163787030646934No Hit
CAGACGCGTGCCTCGACCTGATTC306630.1254014262709915No Hit
CAGACGCGTACCGCACTTAGGCCT296420.12122587736114307No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)