FastQCFastQC Report
Tue 14 Jan 2025
4DNFIIFC7MCV.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename4DNFIIFC7MCV.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences79076327
Sequences flagged as poor quality0
Sequence length24
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGACGCGAATCCACCTACTGATC2350390.29723054789836156No Hit
CAGACGCGGCTCAAGGACTAAGAC1984700.2509853549469995No Hit
CAGACGCGTACCTCCTGGTCCTGA1288730.16297292108673686No Hit
CAGACGCGCTGGCAGGAGGCGGAA1278920.16173234753303603No Hit
CAGACGCGAACGAATCTGCAACAG989960.1251904378411506No Hit
CAGACGCGAGAGCTGCTAGGATCG925420.11702870316675179No Hit
CAGACGCGATAAAGGACCTCACTA892080.11281252352552996No Hit
CAGACGCGCCAAATAACCTTAGTC876780.11087768403810663No Hit
CAGACGCGACCTCGCGAGGAACAA821940.10394261230671475No Hit
CAGACGCGCTAACGGACAGCCTAA797910.10090377617058516No Hit
CAGACGCGGATTCAAGATTACTAC796330.10070396921698196No Hit
CAGACGCGGCGGTTGACTCCCTCT791580.10010328375520021No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)