FastQCFastQC Report
Tue 14 Jan 2025
4DNFIHDCCVMW.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename4DNFIHDCCVMW.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46324535
Sequences flagged as poor quality0
Sequence length24
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGACGCGTGCTGTGCTTCGCTTT1558090.33634228600459776No Hit
CAGACGCGTAAGGCTGACTTACAT1472950.3179632564039768No Hit
CAGACGCGGTCACCATGTAACGAA1103510.23821286063637767No Hit
CAGACGCGCATGGCGGAGTCGCAA1027560.22181766098677513No Hit
CAGACGCGATAGCTCCTTAACCGC960560.20735448288903494No Hit
CAGACGCGGGTTACAACCTTTAGC931370.20105328634167619No Hit
CAGACGCGTCTCAAACTTCAATAC922440.19912558215641019No Hit
CAGACGCGTTTGAGCTGAGGAACT883220.19065922626098675No Hit
CAGACGCGGTCTAGCTGTCATCAG687530.14841595279909447No Hit
CAGACGCGGGGAGGACTCGATTAT655420.14148442072867No Hit
CAGACGCGTGCTAGCCTATCCTCC635530.13719079964860953No Hit
CAGACGCGCCTTTCTGATTGCTAT579790.12515829894460895No Hit
CAGACGCGAAGCACGCTCCATCCC526570.11366978643174723No Hit
CAGACGCGTGTGAGCACGCCACTT512540.11064115376441448No Hit
CAGACGCGCTAACGGACAAAGGTA508110.10968485706332508No Hit
CAGACGCGCCTAAGGACCTCGACC504330.10886887477661675No Hit
CAGACGCGACAAAGAACTAATGCA499100.10773988341167375No Hit
GGGGGGGGGGGGGGGGGGGGGGGG496920.10726929045267264No Hit
CAGACGCGGAAACTCACACAAAGA493730.10658067048055636No Hit
CAGACGCGAGGACTTACGTAGCTA484950.10468534654476294No Hit
CAGACGCGTAGGTAGCTTAACGGA484270.10453855608048737No Hit
CAGACGCGGCTGCAAGAGGGAGCA473980.10231727096667025No Hit
CAGACGCGTAAGGCTGATCCGTCA464990.10037661468161527No Hit
CAGACGCGGTTGCTGTGCATCACA464960.10037013863172074No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)