FastQCFastQC Report
Tue 14 Jan 2025
4DNFIGDNHT5W.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename4DNFIGDNHT5W.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28665739
Sequences flagged as poor quality0
Sequence length24
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGACGCGTCCCATAACCCAAAGC698100.243531136594804No Hit
CAGACGCGCAACCTGCTCACATTA673200.2348448089895746No Hit
CAGACGCGACATAGTGATTCATCA607300.21185569295806397No Hit
CAGACGCGGCAACGGTGGCTTCGA511110.17829995591601527No Hit
CAGACGCGAGTCTTGCTGACCGCT455640.15894932972075132No Hit
CAGACGCGGAGAGCAACCTAGTAA421180.14692801047271098No Hit
CAGACGCGGGCGAGAGAGTATGTA391860.13669977250542886No Hit
CAGACGCGAAGACAAACGCTAATG365950.1276611079170155No Hit
CAGACGCGCAGGCCTTGCTAGAAA330820.11540606017517985No Hit
CAGACGCGTCCTAAGTGTCCCGGA311090.10852327930565472No Hit
CAGACGCGAAGTGAGGATAGCCAA303630.10592086950906796No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)