FastQCFastQC Report
Tue 14 Jan 2025
4DNFIBSJ1XXX.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename4DNFIBSJ1XXX.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42117886
Sequences flagged as poor quality0
Sequence length24
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGACGCGCCTTACGGACTCAATT1558350.36999720261363545No Hit
CAGACGCGAGTAACCACGGTACGC1227430.2914272572939677No Hit
CAGACGCGGGTTATCCTTCAAGGA1172070.2782831977844282No Hit
CAGACGCGTCAATGAACGCTAACA1166270.2769061106248305No Hit
CAGACGCGGCGGATACTAGGCTGA861520.20454967754079587No Hit
CAGACGCGCGGGAACCTAACGGAC646400.15347398964895817No Hit
CAGACGCGAGGTTATGACACCTTG618920.14694944565831247No Hit
CAGACGCGTAGGCATGAGGTTGGT597650.14189933464371884No Hit
CAGACGCGCCTGCTCCTATGTGGG578120.13726234977700447No Hit
GGGGGGGGGGGGGGGGGGGGGGGG569890.13530831058329945No Hit
CAGACGCGAGCGTGCACCGCAACA504780.11984932007271211No Hit
CAGACGCGGTAGCAGCTCCCTCAC457140.10853821105836128No Hit
CAGACGCGCAGTCTATGTGCGGAA435090.1033029055636838No Hit
CAGACGCGAACGGGAACGGATTTG434310.10311771108359997No Hit
CAGACGCGGGCATGGTGACACAAG428420.10171925533014645No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)