Basic Statistics
Measure | Value |
---|---|
Filename | data.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8913645 |
Sequences flagged as poor quality | 0 |
Sequence length | 76 |
%GC | 54 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTGAGAATGAGCCCCGTGTGGTTGGTGCGAGCCAGGTCGCACTGCCTGCG | 17661 | 0.19813443322008 | No Hit |
GCCGCGCTGAGAATGAGCCCCGTGTGGTTGGTGCGAGCCAGGTCGCACTG | 16534 | 0.18549089626073284 | No Hit |
CTCAGACTGTGTCCTCTCCCTCTCAACCCTCAAGAGAGTTGAGAACGATC | 16224 | 0.18201308219028242 | No Hit |
GGGAAGTCTACGCGCGTGTGCACGCGGCACTCTCTGCCCGTGGTCCGGGG | 13823 | 0.15507685127689064 | No Hit |
CCGCGCTGAGAATGAGCCCCGTGTGGTTGGTGCGAGCCAGGTCGCACTGC | 12760 | 0.14315131464176553 | No Hit |
GTGTGGTTGGTGCGAGCCAGGTCGCACTGCCTGCGTCACTATGTGAGCTG | 11683 | 0.13106871543571683 | No Hit |
CGCGCTGAGAATGAGCCCCGTGTGGTTGGTGCGAGCCAGGTCGCACTGCC | 11569 | 0.12978977735819633 | No Hit |
CTAACAGTGACTTGCGGGGGAAGTCTACGCGCGTGTGCACGCGGCACTCT | 10741 | 0.12050064816357393 | No Hit |
GTCGCTTCTTGGCGGGCTAACAGTGACTTGCGGGGGAAGTCTACGCGCGT | 9691 | 0.1087209553443064 | No Hit |
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG | 9656 | 0.10832829891699747 | No Hit |
CCCCACTACCACAAATTATGCAGTCGAGTTTCCCGCATTTGGGGAAATCG | 9453 | 0.10605089163860575 | No Hit |
CCCAGACGCACCTCGGCCAACAGACCACCACACCGTCGGGACAATGACCA | 8991 | 0.10086782679812804 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTACGG | 1260 | 0.0 | 41.672703 | 3 |
ACTGCGT | 2330 | 0.0 | 36.056725 | 6 |
GACTGCG | 2475 | 0.0 | 33.661446 | 5 |
CTGCGTT | 2510 | 0.0 | 33.466103 | 7 |
TGCGTTC | 2565 | 0.0 | 32.474873 | 8 |
GCGTTCC | 2635 | 0.0 | 31.47934 | 9 |
GAGAACG | 4060 | 0.0 | 31.465134 | 41 |
AACCCTC | 4225 | 0.0 | 30.567333 | 25 |
TCAGACT | 7245 | 0.0 | 30.439875 | 2 |
CGTTCCC | 2765 | 0.0 | 29.872719 | 10 |
TATGCCG | 365 | 0.0 | 29.7265 | 48 |
TCAACCC | 4400 | 0.0 | 29.43113 | 23 |
AGTTGCA | 4265 | 0.0 | 29.296406 | 67 |
GTTGCAA | 4130 | 0.0 | 29.237097 | 68 |
GATAGCA | 4620 | 0.0 | 27.802223 | 61 |
CAGACTG | 7990 | 0.0 | 27.600996 | 3 |
CCGCGCT | 4300 | 0.0 | 27.190596 | 2 |
GAGTTGA | 4855 | 0.0 | 26.60067 | 36 |
AGAGTTG | 4910 | 0.0 | 26.445261 | 35 |
CAACCCT | 4935 | 0.0 | 26.1696 | 24 |