FastQCFastQC Report
Tue 14 Jan 2025
4DNFIA39LRD2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename4DNFIA39LRD2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35716118
Sequences flagged as poor quality0
Sequence length24
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGACGCGCTTCATTTGTGGGTGA907660.25413176202408116No Hit
CAGACGCGCCAGGCTTGCGTGTTA844140.23634707444969244No Hit
CAGACGCGACATGTTTGAATCGTT817410.22886305840965135No Hit
CAGACGCGCAGGAATCTAGGCCCT777990.21782602465363118No Hit
CAGACGCGGGTTCATCTAAGAATC732480.20508387837670375No Hit
CAGACGCGTGGTTATCTACTACGT700830.1962223330094273No Hit
CAGACGCGCACTAAGGAAGCTAAT699230.19577435599244017No Hit
CAGACGCGGTTTAACTGGGAACAT687990.19262731744810563No Hit
CAGACGCGCTATTAGCTACGGGTA630590.17655614196369268No Hit
CAGACGCGATAGCCTCTCCCTCAC583010.1632344254210382No Hit
CAGACGCGAACGATTGATTCCGCA565670.1583794744994403No Hit
CAGACGCGGGTATAGTGTCACGAT500830.1402252058860372No Hit
CAGACGCGATGTGATGATTTGGGA491460.13760174048030638No Hit
CAGACGCGGTAACTAGAAGGCTGT480470.1345246983448761No Hit
CAGACGCGCTTGACCGAGGTTAGC480040.13440430452156082No Hit
CAGACGCGGTAATTGGATCCTAAT470480.13172764184506278No Hit
CAGACGCGTTTCCGGGATTACGTT440630.12337007062189682No Hit
CAGACGCGGTTCCTTTGCAATCCA440250.12326367608036237No Hit
CAGACGCGAAGTTAGCTTCATTAG430020.12039942302800098No Hit
CAGACGCGGTTGTTGCTAAGCACG428670.12002144241991808No Hit
CAGACGCGCATGGTGACGCAATCA416540.11662521665988447No Hit
CAGACGCGGGATCCAGACTTCGAC414550.11606804524500675No Hit
CAGACGCGGGTTATCCTGATATAG413590.11579925903481447No Hit
CAGACGCGAGGCTAATGAATCAGG410600.1149621019843198No Hit
CAGACGCGCTTAGTGTGCCTTTAT409550.114668117066922No Hit
CAGACGCGCTAGTTTGAGGGTGGA406000.11367416806048183No Hit
CAGACGCGAGCTTGTCTAAAGGCC404830.11334658486681No Hit
CAGACGCGGATGTAACTAGCCAGA386440.10819764902781429No Hit
CAGACGCGGTGAGGAACTATCCGT380280.10647293751241388No Hit
CAGACGCGGCTTTGGTGTAACGGG374110.10474542614065728No Hit
CAGACGCGGCATATAGATACTTAC373140.10447384007410884No Hit
CAGACGCGCTCAAGGACCACAATA369810.1035414879075044No Hit
CAGACGCGTGGTCAAGACAACAAC369400.10342669379690143No Hit
CAGACGCGACTAGTTTGAGGAGAG368900.10328670097909295No Hit
CAGACGCGATGCTATTGAGCGCGA366490.10261193559725612No Hit
CAGACGCGTCACGTTACGCAAGGA365870.10243834450317361No Hit
CAGACGCGGGAAGCAACCCGGATA365570.10235434881248852No Hit
CAGACGCGTGTGCGGGATAACGTG364100.1019427699281316No Hit
CAGACGCGCTGAGCAACAGATAGA363360.10173558055777507No Hit
CAGACGCGAGCAAACTGTGCTGAT363110.10166558414887084No Hit
CAGACGCGTGCATCGCTGATCACT362640.10153399090013085No Hit
CAGACGCGCAATTGGGAGTAGTTA361540.10122600670095222No Hit
CAGACGCGAACTTGGACTAACCTC360120.10082842709837614No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)