FastQCFastQC Report
Tue 14 Jan 2025
4DNFI6GIRG39.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename4DNFI6GIRG39.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26650105
Sequences flagged as poor quality0
Sequence length24
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGACGCGTCCCATAACCCAAAGC491000.1842394241973906No Hit
CAGACGCGCAACCTGCTCACATTA489280.18359402336313496No Hit
CAGACGCGACATAGTGATTCATCA424260.15919637089609964No Hit
CAGACGCGGCAACGGTGGCTTCGA373560.1401720556072856No Hit
CAGACGCGGGCGAGAGAGTATGTA333920.12529781777595247No Hit
CAGACGCGGAGAGCAACCTAGTAA316200.11864868825094685No Hit
CAGACGCGAGTCTTGCTGACCGCT311560.11690760693062936No Hit
CAGACGCGAAGACAAACGCTAATG269030.10094894560452952No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)