FastQCFastQC Report
Thu 18 Oct 2018
data.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filenamedata.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences223963544
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGGACG1985650.017.5406844
GGACGTG2067700.016.5456096
AGGACGT2104350.016.4525035
GTAGGAC2459700.015.7242733
GACGTGA1364900.015.6147417
GTCCTAC2460350.014.1337211
TAGGACC1533550.013.8046464
CGATCCT6685300.013.48352054
GACGTGG1169300.013.1155917
GTATTAG1419450.012.8545051
GTATATA3795100.012.7381661
TATACTG1879700.012.623435
GTATAGG1112950.012.5891471
GTCCTAA2427100.012.2596661
TGTACTG2144000.012.0267225
TGTAGGA3680150.011.9747112
TTAGGAC2387350.011.8684563
CCTGTAC1652800.011.827533
GTATAAG1432850.011.6764741
TATACAG2820050.011.6529015
Produced by FastQC (version 0.11.5)