FastQCFastQC Report
Tue 14 Jan 2025
4DNFI1LMF861.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename4DNFI1LMF861.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40608902
Sequences flagged as poor quality0
Sequence length24
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGACGCGCCTTACGGACTCAATT1485760.3658705177500244No Hit
CAGACGCGAGTAACCACGGTACGC1180730.2907564454709955No Hit
CAGACGCGGGTTATCCTTCAAGGA1115670.2747353277367608No Hit
CAGACGCGTCAATGAACGCTAACA1105840.27231467622542466No Hit
CAGACGCGGCGGATACTAGGCTGA839500.20672807159376042No Hit
CAGACGCGCGGGAACCTAACGGAC627620.15455231958746385No Hit
CAGACGCGAGGTTATGACACCTTG595460.14663287374773148No Hit
CAGACGCGTAGGCATGAGGTTGGT574820.14155024432820174No Hit
CAGACGCGCCTGCTCCTATGTGGG572640.14101341622090646No Hit
GGGGGGGGGGGGGGGGGGGGGGGG544060.13397555048398008No Hit
CAGACGCGAGCGTGCACCGCAACA476290.11728709138700671No Hit
CAGACGCGGTAGCAGCTCCCTCAC443760.10927653251988935No Hit
CAGACGCGCAGTCTATGTGCGGAA423560.10430225372752014No Hit
CAGACGCGGGCATGGTGACACAAG419230.1032359850556905No Hit
CAGACGCGAACGGGAACGGATTTG409280.1007857833733106No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)