FastQCFastQC Report
Tue 14 Jan 2025
4DNFI19DGIHY.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename4DNFI19DGIHY.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23449314
Sequences flagged as poor quality0
Sequence length24
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGACGCGCCTTACGGACTCAATT966290.4120760206460624No Hit
CAGACGCGAGTAACCACGGTACGC825170.35189515565359397No Hit
CAGACGCGGGTTATCCTTCAAGGA809420.3451785412571131No Hit
CAGACGCGTCAATGAACGCTAACA768440.32770255027503153No Hit
CAGACGCGGCGGATACTAGGCTGA561100.23928205319780357No Hit
CAGACGCGCCTGCTCCTATGTGGG430190.18345526014108557No Hit
CAGACGCGCGGGAACCTAACGGAC425460.18143814356360277No Hit
CAGACGCGAGGTTATGACACCTTG398600.1699836506944297No Hit
CAGACGCGTAGGCATGAGGTTGGT379290.16174886821849033No Hit
CAGACGCGAGCGTGCACCGCAACA318690.13590589473107828No Hit
CAGACGCGGGCATGGTGACACAAG292750.12484373743300123No Hit
CAGACGCGAACGGGAACGGATTTG275320.11741068416756242No Hit
CAGACGCGATAAAGGACTTGACCT255470.10894561776945799No Hit
CAGACGCGGTAGCAGCTCCCTCAC248000.10576002351284136No Hit
CAGACGCGGCCACTTACTTCCTTT235620.10048055137135356No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)