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For in vivo cloning a fragment of DNA, containing a single gene or a number of genes, is inserted into a vector that can be amplified within another host cell.
Each cycle takes a few minutes, and repeated cycles can produce large amounts of a specific DNA sequence in a matter of hours rather than days.
There are also a number of techniques that can be used to identify specific genes or gene products within a gene library and these are: Southern blotting, Northern blotting and Western blotting.
The new techniques of molecular genetics, combined with developments in associated biotechnologies, have led to advances in a number of different fields. The technique of genetic fingerprinting, which enables the identification of individuals and the relationships between individuals has found many applications in science today. Most RFLP markers are co-dominant (both alleles in heterozygous sample will be detected) and highly locus-specific. An RFLP probe is a labeled DNA sequence that hybridizes with one or more fragments of the digested DNA sample after they were separated by gel electrophoresis, thus revealing a unique blotting pattern characteristic to a specific genotype at a specific locus. The RFLP probes are frequently used in genome mapping and in variation analysis (genotyping, forensics, paternity tests, hereditary disease diagnostics, etc.). SNPs or INDELs can create or abolish restriction endonuclease (RE) recognition sites, thus affecting quantities and length of DNA fragments resulting from RE digestion. Total DNA is digested with a methylation-sensitive enzyme (for example, PstI), thereby enriching the library for single- or low-copy expressed sequences (PstI clones are based on the suggestion that expressed genes are not methylated).
The digested DNA is size-fractionated on a preparative agarose gel, and fragments ranging from 500 to 2000 bp are excised, eluted and cloned into a plasmid vector (for example, pUC18).
Southern blots of the inserts can be probed with total sheared DNA to select clones that hybridize to single- and low-copy sequences.

The probes are screened for RFLPs using genomic DNA of different genotypes digested with restriction endonucleases. Mention of specific products or vendors on this website does not constitute an endorsement by the U.S. A vector is a section of DNA that can incorporate another DNA fragment without losing the capacity for self-replication, and a vector containing an additional DNA fragment is known as a hybrid vector. A variety of cell types are used as hosts, including bacteria, yeast cells and mammalian cells. However, this cloning method does require knowledge of some details about the nucleotide sequence to be copied, and the technique is very sensitive to small amounts of contamination. However, the most powerful experimental technique for investigating genetics at the molecular level is DNA sequencing, which allows the nucleotide sequences of genes a€“ even whole chromosomes a€“ to be determined. We can now analyse the genomes of species that make an important contribution to agriculture, fuel production or drug development. There is also ongoing research into gene therapy which examines the possibility of introducing cloned genes to compensate for defective, mutant genes.
In species with low polymorphism rates, additional restriction endonucleases can be tested to increase the chance of finding polymorphism.
However, PCR can be used to amplify very small amounts of DNA, usually in 2-3 hours, to the levels required for RFLP analysis. The tag is used to limit the search to articles for which major subjects are represented by terms included in the NLM MeSH database.
The process depends on the ability to cut and re-join DNA molecules at points which are identified by specific sequences of nucleotide bases called restriction sites.

If the fragment of DNA includes one or more genes the process is referred to as gene cloning. The first step in creating a genomic library is to break up, or a€?fractionatea€™, the genome using physical methods or restriction enzymes. Automated sequencing technologies are now allowing us to sequence the entire genomes of organisms from bacteria to human beings. We can move specific genes from one organism to another to create transgenic plants and animals, and use animal cloning techniques to produce animals that are genetically identical, such as Dolly the sheep, and more recently, cloned pets such as cats and dogs.
And other areas, for example, human cloning and stem cell research open up many ethical issues that must be addressed alongside the scientific developments.
DNA fragments are cut out of their normal position in the chromosome using restriction enzymes (also called restriction endonucleases) and then inserted into other chromosomes or DNA molecules using enzymes called ligases. The fragments are then linked to appropriate vectors and cloned in a suitable host cell population. An alternative name for the technique is Cleaved Amplified Polymorphic Sequence (CAPS) assay.

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