Running 'CreateBenchmarkPlots' in /tmp/tmp.OP32Opt1Zf
+ : /tmp/tmp.OP32Opt1Zf
+ : gcc-4x5-1Mon-14.6.3
+ : gcc-4x5-1Mon-14.7.0-alpha.17
+ run_stage_name=Plotting
+ download_latest_gcpy
+ git clone https://github.com/geoschem/gcpy.git --branch dev --depth 1
Cloning into 'gcpy'...
++ pwd
+ export PYTHONPATH=/tmp/tmp.OP32Opt1Zf/gcpy
+ PYTHONPATH=/tmp/tmp.OP32Opt1Zf/gcpy
+ devdir=dev-gcc
+ [[ xgcc == \x\g\c\c ]]
+ refdir=ref-gcc
+ mkdir ref-gcc
+ cd ref-gcc
+ download_artifacts gcc-4x5-1Mon-14.6.3
+ artifacts_pk=gcc-4x5-1Mon-14.6.3
++ aws dynamodb get-item --table-name geoschem_testing --key '{"InstanceID": {"S": "gcc-4x5-1Mon-14.6.3"}}' --attributes-to-get Stages --profile=default
++ jq -r '.Item.Stages.L[] | select(.M.Name.S != "CreateBenchmarkPlots") | .M.Artifacts.L[].S'
+ artifacts='s3://benchmarks-cloud/benchmarks/1Mon/gcc/gcc-4x5-1Mon-14.6.3/SetupRunDirectory_RunDirectory.tar.gz
s3://benchmarks-cloud/benchmarks/1Mon/gcc/gcc-4x5-1Mon-14.6.3/RunGCC_OutputDir.tar.gz'
+ for artifact_uri in '${artifacts}'
+ aws s3 cp s3://benchmarks-cloud/benchmarks/1Mon/gcc/gcc-4x5-1Mon-14.6.3/SetupRunDirectory_RunDirectory.tar.gz artifact.tar.gz --only-show-errors
+ tar -xvzf artifact.tar.gz
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download: s3://benchmarks-cloud/diff-plots/sparse-lt-weights/c48.tile3.nc to weights/c48.tile3.nc
+ case ${GEOSCHEM_BENCHMARK_TIME_PERIOD} in
+ export GEOSCHEM_BENCHMARK_PLOTTING_CONFIG_FILE=gcpy/gcpy/benchmark/cloud/template.1mo_benchmark.yml
+ GEOSCHEM_BENCHMARK_PLOTTING_CONFIG_FILE=gcpy/gcpy/benchmark/cloud/template.1mo_benchmark.yml
+ envsubst
+ update_plotting_config_file benchmark.yml
+ filename=benchmark.yml
+ results_dir=dev-gchp
+ case ${GEOSCHEM_BENCHMARK_COMPARISON_TYPE} in
+ sed -i '/gchp_vs_gcc_diff_of_diffs:/{n;s/run: False/run: True/;}' benchmark.yml
+ diff_refdir=ref-gchp
+ diff_devdir=dev-gchp
+ TAG=gchp
+ NAME=gchp-c24-1Mon-14.6.3
+ yq -i '.data.ref.[env(TAG)].version = strenv(NAME)' benchmark.yml
+ TAG=gchp
+ NAME=gchp-c24-1Mon-14.7.0-alpha.17
+ yq -i '.data.dev.[env(TAG)].version = strenv(NAME)' benchmark.yml
+ mkdir dev-gchp
+ cd dev-gchp
+ download_artifacts gchp-c24-1Mon-14.7.0-alpha.17
+ artifacts_pk=gchp-c24-1Mon-14.7.0-alpha.17
++ aws dynamodb get-item --table-name geoschem_testing --key '{"InstanceID": {"S": "gchp-c24-1Mon-14.7.0-alpha.17"}}' --attributes-to-get Stages --profile=default
++ jq -r '.Item.Stages.L[] | select(.M.Name.S != "CreateBenchmarkPlots") | .M.Artifacts.L[].S'
+ artifacts='s3://benchmarks-cloud/benchmarks/1Mon/gchp/gchp-c24-1Mon-14.7.0-alpha.17/SetupRunDirectory_RunDirectory.tar.gz
s3://benchmarks-cloud/benchmarks/1Mon/gchp/gchp-c24-1Mon-14.7.0-alpha.17/RunGCHP_OutputDir.tar.gz'
+ for artifact_uri in '${artifacts}'
+ aws s3 cp s3://benchmarks-cloud/benchmarks/1Mon/gchp/gchp-c24-1Mon-14.7.0-alpha.17/SetupRunDirectory_RunDirectory.tar.gz artifact.tar.gz --only-show-errors
+ tar -xvzf artifact.tar.gz
run-directory/archiveRun.sh
run-directory/build/
run-directory/build/README
run-directory/CAP.rc
run-directory/cap_restart
run-directory/checkRunSettings.sh
run-directory/ChemDir
run-directory/cleanRunDir.sh
run-directory/CodeDir
run-directory/CreateRunDirLogs/
run-directory/CreateRunDirLogs/rundir_vars.txt
run-directory/ESMF.rc
run-directory/ExtData.rc
run-directory/gchp
run-directory/GCHP.rc
run-directory/gchp_restart.nc4
run-directory/geoschem_config.yml
run-directory/HcoDir
run-directory/HEMCO_Config.rc
run-directory/HEMCO_Diagn.rc
run-directory/HISTORY.rc
run-directory/input.nml
run-directory/kpp_standalone_interface.yml
run-directory/logging.yml
run-directory/MetDir
run-directory/metrics.py
run-directory/OutputDir/
run-directory/README.md
run-directory/Restarts/
run-directory/Restarts/GEOSChem.Restart.20190701_0000z.c24.nc4
run-directory/Restarts/GEOSChem.Restart.20190701_0000z.c30.nc4
run-directory/Restarts/GEOSChem.Restart.20190701_0000z.c48.nc4
run-directory/Restarts/GEOSChem.Restart.20190701_0000z.c90.nc4
run-directory/Restarts/GEOSChem.Restart.20190701_0000z.c180.nc4
run-directory/runScriptSamples
run-directory/setCommonRunSettings.sh
run-directory/setEnvironmentLink.sh
run-directory/setRestartLink.sh
run-directory/species_database.yml
run-directory/utils/
run-directory/utils/extra_static_files.txt
run-directory/utils/extra_templates.txt
run-directory/utils/listInputDataFiles
run-directory/utils/simulation-status
+ rm -f artifact.tar.gz
+ for artifact_uri in '${artifacts}'
+ aws s3 cp s3://benchmarks-cloud/benchmarks/1Mon/gchp/gchp-c24-1Mon-14.7.0-alpha.17/RunGCHP_OutputDir.tar.gz artifact.tar.gz --only-show-errors
+ tar -xvzf artifact.tar.gz
run-directory/
run-directory/OutputDir/
run-directory/OutputDir/GEOSChem.AerosolMass.20190701_0000z.nc4
run-directory/OutputDir/GEOSChem.Aerosols.20190701_0000z.nc4
run-directory/OutputDir/GEOSChem.DryDep.20190701_0000z.nc4
run-directory/OutputDir/GEOSChem.Emissions.20190701_0000z.nc4
run-directory/OutputDir/GEOSChem.FV3Dynamics.20190701_0000z.nc4
run-directory/OutputDir/GEOSChem.GCHPctmEnvLevCenter.20190701_0000z.nc4
run-directory/OutputDir/GEOSChem.GCHPctmEnvLevEdge.20190701_0000z.nc4
run-directory/OutputDir/GEOSChem.JValues.20190701_0000z.nc4
run-directory/OutputDir/GEOSChem.Metrics.20190701_0000z.nc4
run-directory/OutputDir/GEOSChem.SpeciesConc.20190701_0000z.nc4
run-directory/OutputDir/GEOSChem.StateMet.20190701_0000z.nc4
run-directory/OutputDir/geoschem_species_metadata.yml
run-directory/OutputDir/species_database.yml
run-directory/Restarts/
run-directory/Restarts/GEOSChem.Restart.20190701_0000z.c180.nc4
run-directory/Restarts/GEOSChem.Restart.20190701_0000z.c24.nc4
run-directory/Restarts/GEOSChem.Restart.20190701_0000z.c30.nc4
run-directory/Restarts/GEOSChem.Restart.20190701_0000z.c48.nc4
run-directory/Restarts/GEOSChem.Restart.20190701_0000z.c90.nc4
run-directory/Restarts/GEOSChem.Restart.20190801_0000z.c24.nc4
run-directory/allPEs.log
run-directory/runlog.txt
run-directory/species_database.yml
+ rm -f artifact.tar.gz
+ mkdir ref-gchp
+ cd ref-gchp
+ download_artifacts gchp-c24-1Mon-14.6.3
+ artifacts_pk=gchp-c24-1Mon-14.6.3
++ aws dynamodb get-item --table-name geoschem_testing --key '{"InstanceID": {"S": "gchp-c24-1Mon-14.6.3"}}' --attributes-to-get Stages --profile=default
++ jq -r '.Item.Stages.L[] | select(.M.Name.S != "CreateBenchmarkPlots") | .M.Artifacts.L[].S'
+ artifacts='s3://benchmarks-cloud/benchmarks/1Mon/gchp/gchp-c24-1Mon-14.6.3/SetupRunDirectory_RunDirectory.tar.gz
s3://benchmarks-cloud/benchmarks/1Mon/gchp/gchp-c24-1Mon-14.6.3/RunGCHP_OutputDir.tar.gz'
+ for artifact_uri in '${artifacts}'
+ aws s3 cp s3://benchmarks-cloud/benchmarks/1Mon/gchp/gchp-c24-1Mon-14.6.3/SetupRunDirectory_RunDirectory.tar.gz artifact.tar.gz --only-show-errors
+ tar -xvzf artifact.tar.gz
run-directory/archiveRun.sh
run-directory/build/
run-directory/build/README
run-directory/CAP.rc
run-directory/cap_restart
run-directory/checkRunSettings.sh
run-directory/ChemDir
run-directory/cleanRunDir.sh
run-directory/CodeDir
run-directory/CreateRunDirLogs/
run-directory/CreateRunDirLogs/rundir_vars.txt
run-directory/ESMF.rc
run-directory/ExtData.rc
run-directory/gchp
run-directory/GCHP.rc
run-directory/gchp_restart.nc4
run-directory/geoschem_config.yml
run-directory/HcoDir
run-directory/HEMCO_Config.rc
run-directory/HEMCO_Diagn.rc
run-directory/HISTORY.rc
run-directory/input.nml
run-directory/kpp_standalone_interface.yml
run-directory/logging.yml
run-directory/MetDir
run-directory/metrics.py
run-directory/OutputDir/
run-directory/README.md
run-directory/Restarts/
run-directory/Restarts/GEOSChem.Restart.20190701_0000z.c24.nc4
run-directory/Restarts/GEOSChem.Restart.20190701_0000z.c30.nc4
run-directory/Restarts/GEOSChem.Restart.20190701_0000z.c48.nc4
run-directory/Restarts/GEOSChem.Restart.20190701_0000z.c90.nc4
run-directory/Restarts/GEOSChem.Restart.20190701_0000z.c180.nc4
run-directory/runScriptSamples
run-directory/setCommonRunSettings.sh
run-directory/setEnvironmentLink.sh
run-directory/setRestartLink.sh
run-directory/species_database.yml
run-directory/utils/
run-directory/utils/extra_static_files.txt
run-directory/utils/extra_templates.txt
run-directory/utils/listInputDataFiles
run-directory/utils/simulation-status
+ rm -f artifact.tar.gz
+ for artifact_uri in '${artifacts}'
+ aws s3 cp s3://benchmarks-cloud/benchmarks/1Mon/gchp/gchp-c24-1Mon-14.6.3/RunGCHP_OutputDir.tar.gz artifact.tar.gz --only-show-errors
+ tar -xvzf artifact.tar.gz
run-directory/OutputDir/GEOSChem.AerosolMass.20190701_0000z.nc4
run-directory/OutputDir/GEOSChem.Aerosols.20190701_0000z.nc4
run-directory/OutputDir/GEOSChem.DryDep.20190701_0000z.nc4
run-directory/OutputDir/GEOSChem.Emissions.20190701_0000z.nc4
run-directory/OutputDir/GEOSChem.FV3Dynamics.20190701_0000z.nc4
run-directory/OutputDir/GEOSChem.GCHPctmEnvLevCenter.20190701_0000z.nc4
run-directory/OutputDir/GEOSChem.GCHPctmEnvLevEdge.20190701_0000z.nc4
run-directory/OutputDir/GEOSChem.JValues.20190701_0000z.nc4
run-directory/OutputDir/GEOSChem.Metrics.20190701_0000z.nc4
run-directory/OutputDir/GEOSChem.SpeciesConc.20190701_0000z.nc4
run-directory/OutputDir/geoschem_species_metadata.yml
run-directory/OutputDir/GEOSChem.StateMet.20190701_0000z.nc4
run-directory/Restarts/GEOSChem.Restart.20190701_0000z.c180.nc4
run-directory/Restarts/GEOSChem.Restart.20190701_0000z.c24.nc4
run-directory/Restarts/GEOSChem.Restart.20190701_0000z.c30.nc4
run-directory/Restarts/GEOSChem.Restart.20190701_0000z.c48.nc4
run-directory/Restarts/GEOSChem.Restart.20190701_0000z.c90.nc4
run-directory/Restarts/GEOSChem.Restart.20190801_0000z.c24.nc4
run-directory/species_database.yml
run-directory/allPEs.log
run-directory/runlog.txt
+ rm -f artifact.tar.gz
+ python gcpy/gcpy/benchmark/run_benchmark.py benchmark.yml
Using configuration file benchmark.yml
Using species database /tmp/tmp.OP32Opt1Zf/dev-gcc/run-directory/species_database.yml
The following plots and tables will be created for FullChemBenchmark
 - Aerosol optical depth plots
 - Concentration plots
 - Drydep velocity plots
 - Emissions plots
 - J-values (photolysis rates) plots
 - Table of emissions totals by species and inventory
 - Table of species mass
 - Table of OH metrics
 - Table of strat-trop exchange
Comparisons will be made for the following combinations:
 - GCHP vs GCC diff of diffs

%%% Creating GCHP vs. GCC diff-of-diffs conc plots %%%

Printing second_refds (dev of ref for diff-of-diffs)

<xarray.Dataset> Size: 372MB
Dimensions:                 (time: 1, lev: 72, ilev: 73, lat: 46, nb: 2, lon: 72)
Coordinates:
  * time                    (time) datetime64[ns] 8B 2019-07-01
  * lev                     (lev) float64 576B 0.9925 0.9775 ... 1.5e-05
  * ilev                    (ilev) float64 584B 1.0 0.985 0.97 ... 2e-05 1e-05
  * lat                     (lat) float64 368B -89.0 -86.0 -82.0 ... 86.0 89.0
  * lon                     (lon) float64 576B -180.0 -175.0 ... 170.0 175.0
Dimensions without coordinates: nb
Data variables: (12/398)
    lat_bnds                (lat, nb) float64 736B -90.0 -88.0 ... 88.0 90.0
    lon_bnds                (lon, nb) float64 1kB -182.5 -177.5 ... 172.5 177.5
    hyam                    (lev) float64 576B 0.02402 3.321 ... 0.02635 0.015
    hybm                    (lev) float64 576B 0.9925 0.9742 0.9526 ... 0.0 0.0
    hyai                    (ilev) float64 584B 0.0 0.04805 6.594 ... 0.02 0.01
    hybi                    (ilev) float64 584B 1.0 0.985 0.9634 ... 0.0 0.0 0.0
    ...                      ...
    SpeciesConcVV_ALK4      (time, lev, lat, lon) float32 954kB 2.761e-11 ......
    SpeciesConcVV_ALD2      (time, lev, lat, lon) float32 954kB 7.778e-12 ......
    SpeciesConcVV_AERI      (time, lev, lat, lon) float32 954kB 4.687e-14 ......
    SpeciesConcVV_ACR       (time, lev, lat, lon) float32 954kB 2.317e-14 ......
    SpeciesConcVV_ACTA      (time, lev, lat, lon) float32 954kB 3.026e-12 ......
    SpeciesConcVV_ACET      (time, lev, lat, lon) float32 954kB 2.521e-10 ......
Attributes:
    title:                           GEOS-Chem diagnostic collection: Species...
    history:                         
    format:                          NetCDF-4
    conventions:                     COARDS
    ProdDateTime:                    
    reference:                       www.geos-chem.org; wiki.geos-chem.org
    contact:                         GEOS-Chem Support Team (geos-chem-suppor...
    simulation_start_date_and_time:  2019-07-01 00:00:00z
    simulation_end_date_and_time:    2019-08-01 00:00:00z

Printing second_devds (dev of dev for diff-of-diffs)

<xarray.Dataset> Size: 314MB
Dimensions:                 (Xdim: 24, Ydim: 24, nf: 6, YCdim: 25, XCdim: 25,
                             lev: 72, time: 1)
Coordinates:
  * Xdim                    (Xdim) float64 192B 306.6 309.8 ... 30.18 33.41
  * Ydim                    (Ydim) float64 192B -43.39 -40.16 ... 40.16 43.39
  * nf                      (nf) int32 24B 1 2 3 4 5 6
    lons                    (nf, Ydim, Xdim) float64 28kB 306.6 309.8 ... 35.0
    lats                    (nf, Ydim, Xdim) float64 28kB -34.51 ... -36.76
  * lev                     (lev) float64 576B 1.0 2.0 3.0 ... 70.0 71.0 72.0
  * time                    (time) datetime64[ns] 8B 2019-07-01
Dimensions without coordinates: YCdim, XCdim
Data variables: (12/317)
    corner_lons             (nf, YCdim, XCdim) float64 30kB 305.0 308.2 ... 35.0
    corner_lats             (nf, YCdim, XCdim) float64 30kB -35.26 ... -35.26
    SpeciesConcVV_A3O2      (time, lev, nf, Ydim, Xdim) float32 995kB 7.056e-...
    SpeciesConcVV_ACET      (time, lev, nf, Ydim, Xdim) float32 995kB 5.695e-...
    SpeciesConcVV_ACTA      (time, lev, nf, Ydim, Xdim) float32 995kB 2.228e-...
    SpeciesConcVV_AERI      (time, lev, nf, Ydim, Xdim) float32 995kB 1.447e-...
    ...                      ...
    SpeciesConcVV_TSOG1     (time, lev, nf, Ydim, Xdim) float32 995kB 5.673e-...
    SpeciesConcVV_TSOG2     (time, lev, nf, Ydim, Xdim) float32 995kB 9.606e-...
    SpeciesConcVV_TSOG3     (time, lev, nf, Ydim, Xdim) float32 995kB 2.394e-...
    SpeciesConcVV_XRO2      (time, lev, nf, Ydim, Xdim) float32 995kB 8.261e-...
    SpeciesConcVV_XYLE      (time, lev, nf, Ydim, Xdim) float32 995kB 6.403e-...
    SpeciesConcVV_pFe       (time, lev, nf, Ydim, Xdim) float32 995kB 5.006e-...
Attributes: (12/13)
    Comment:              NetCDF-4
    Contact:              
    Conventions:          CF
    Filename:             SpeciesConc
    History:              File written by MAPL_PFIO
    Institution:          NASA Global Modeling and Assimilation Office
    ...                   ...
    Source:                experiment_id: OutputDir/GEOSChem
    Title:                GEOS-Chem_devel
    additional_vars:      contacts,orientation,anchor
    file_format_version:  2.92
    grid_mapping_name:    gnomonic cubed-sphere
    gridspec_file:        C24_gridspec.nc4

Computing lumped species for full chemistry benchmark
-->Adding lumped species to ref dataset
-->Adding lumped species to dev dataset
-->Adding lumped species to dev datasets
Lumped species computation complete.

Using configuration file /tmp/tmp.OP32Opt1Zf/gcpy/gcpy/benchmark/modules/benchmark_categories.yml
/opt/conda/envs/py39/lib/python3.12/site-packages/cartopy/io/__init__.py:241: DownloadWarning: Downloading: https://naturalearth.s3.amazonaws.com/110m_physical/ne_110m_coastline.zip
  warnings.warn(f'Downloading: {url}', DownloadWarning)

%%%% All requested benchmark plots/tables created! %%%%
+ mv dev-gchp/run-directory/BenchmarkResults BenchmarkResults
++ find BenchmarkResults -type f
+ files='BenchmarkResults/GCHP_GCC_diff_of_diffs/run_benchmark.py
BenchmarkResults/GCHP_GCC_diff_of_diffs/benchmark.yml
BenchmarkResults/GCHP_GCC_diff_of_diffs/lumped_species.yml
BenchmarkResults/GCHP_GCC_diff_of_diffs/benchmark_categories.yml
BenchmarkResults/GCHP_GCC_diff_of_diffs/Aerosols/Aerosols_Surface.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Aerosols/Aerosols_500hPa.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Aerosols/Aerosols_FullColumn_ZonalMean.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Aerosols/Aerosols_Strat_ZonalMean.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Bromine/Bromine_Surface.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Bromine/Bromine_500hPa.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Bromine/Bromine_FullColumn_ZonalMean.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Bromine/Bromine_Strat_ZonalMean.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Chlorine/Chlorine_Surface.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Chlorine/Chlorine_500hPa.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Chlorine/Chlorine_FullColumn_ZonalMean.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Chlorine/Chlorine_Strat_ZonalMean.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Iodine/Iodine_Surface.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Iodine/Iodine_500hPa.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Iodine/Iodine_FullColumn_ZonalMean.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Iodine/Iodine_Strat_ZonalMean.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Nitrogen/Nitrogen_Surface.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Nitrogen/Nitrogen_500hPa.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Nitrogen/Nitrogen_FullColumn_ZonalMean.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Nitrogen/Nitrogen_Strat_ZonalMean.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Oxidants/Oxidants_Surface.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Oxidants/Oxidants_500hPa.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Oxidants/Oxidants_FullColumn_ZonalMean.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Oxidants/Oxidants_Strat_ZonalMean.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Primary_Organics/Primary_Organics_Surface.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Primary_Organics/Primary_Organics_500hPa.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Primary_Organics/Primary_Organics_FullColumn_ZonalMean.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Primary_Organics/Primary_Organics_Strat_ZonalMean.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/ROy/ROy_Surface.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/ROy/ROy_500hPa.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/ROy/ROy_FullColumn_ZonalMean.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/ROy/ROy_Strat_ZonalMean.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Secondary_Organic_Aerosols/Secondary_Organic_Aerosols_Surface.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Secondary_Organic_Aerosols/Secondary_Organic_Aerosols_500hPa.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Secondary_Organic_Aerosols/Secondary_Organic_Aerosols_FullColumn_ZonalMean.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Secondary_Organic_Aerosols/Secondary_Organic_Aerosols_Strat_ZonalMean.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Secondary_Organics/Secondary_Organics_Surface.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Secondary_Organics/Secondary_Organics_500hPa.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Secondary_Organics/Secondary_Organics_FullColumn_ZonalMean.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Secondary_Organics/Secondary_Organics_Strat_ZonalMean.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Sulfur/Sulfur_Surface.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Sulfur/Sulfur_500hPa.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Sulfur/Sulfur_FullColumn_ZonalMean.pdf
BenchmarkResults/GCHP_GCC_diff_of_diffs/Sulfur/Sulfur_Strat_ZonalMean.pdf'
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++ sed s#s3://#http://s3.amazonaws.com/#
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          "S": "http://s3.amazonaws.com/benchmarks-cloud/diff-plots/1Mon/diff-of-diffs-1Mon-gcc-4x5-gchp-c24-14.6.3-14.7.0-alpha.17/BenchmarkResults/GCHP_GCC_diff_of_diffs/Secondary_Organics/Secondary_Organics_Strat_ZonalMean.pdf"
        },
        {
          "S": "http://s3.amazonaws.com/benchmarks-cloud/diff-plots/1Mon/diff-of-diffs-1Mon-gcc-4x5-gchp-c24-14.6.3-14.7.0-alpha.17/BenchmarkResults/GCHP_GCC_diff_of_diffs/Sulfur/Sulfur_Surface.pdf"
        },
        {
          "S": "http://s3.amazonaws.com/benchmarks-cloud/diff-plots/1Mon/diff-of-diffs-1Mon-gcc-4x5-gchp-c24-14.6.3-14.7.0-alpha.17/BenchmarkResults/GCHP_GCC_diff_of_diffs/Sulfur/Sulfur_500hPa.pdf"
        },
        {
          "S": "http://s3.amazonaws.com/benchmarks-cloud/diff-plots/1Mon/diff-of-diffs-1Mon-gcc-4x5-gchp-c24-14.6.3-14.7.0-alpha.17/BenchmarkResults/GCHP_GCC_diff_of_diffs/Sulfur/Sulfur_FullColumn_ZonalMean.pdf"
        },
        {
          "S": "http://s3.amazonaws.com/benchmarks-cloud/diff-plots/1Mon/diff-of-diffs-1Mon-gcc-4x5-gchp-c24-14.6.3-14.7.0-alpha.17/BenchmarkResults/GCHP_GCC_diff_of_diffs/Sulfur/Sulfur_Strat_ZonalMean.pdf"
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    },
    "StartTime": {
      "S": "2025-12-17T20:45:01+0000"
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    "EndTime": {
      "S": "2025-12-17T20:50:42+0000"
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    "Metadata": {
      "S": "{}"
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}'
+ update_status SUCCESSFUL
+ new_status=SUCCESSFUL
+ aws dynamodb update-item --table-name geoschem_testing --key '{"InstanceID":{"S":"diff-of-diffs-1Mon-gcc-4x5-gchp-c24-14.6.3-14.7.0-alpha.17"}}' --update-expression 'SET ExecStatus = :v' --expression-attribute-values '{":v": {"S":"SUCCESSFUL"}}' --profile=default
+ upload_log_file CreateBenchmarkPlots.txt
+ log_file_name=CreateBenchmarkPlots.txt
+ log_file_uri=s3://benchmarks-cloud/diff-plots/1Mon/diff-of-diffs-1Mon-gcc-4x5-gchp-c24-14.6.3-14.7.0-alpha.17/CreateBenchmarkPlots.txt
++ echo s3://benchmarks-cloud/diff-plots/1Mon/diff-of-diffs-1Mon-gcc-4x5-gchp-c24-14.6.3-14.7.0-alpha.17/CreateBenchmarkPlots.txt
++ sed s#s3://#http://s3.amazonaws.com/#
+ log_file_url=http://s3.amazonaws.com/benchmarks-cloud/diff-plots/1Mon/diff-of-diffs-1Mon-gcc-4x5-gchp-c24-14.6.3-14.7.0-alpha.17/CreateBenchmarkPlots.txt
+ aws s3 cp CreateBenchmarkPlots.txt s3://benchmarks-cloud/diff-plots/1Mon/diff-of-diffs-1Mon-gcc-4x5-gchp-c24-14.6.3-14.7.0-alpha.17/CreateBenchmarkPlots.txt --only-show-errors --acl public-read