Running 'CreateBenchmarkPlots' in /tmp/tmp.Qe7un2gWnJ
+ : /tmp/tmp.Qe7un2gWnJ
+ : gcc-4x5-1Mon-14.7.0-alpha.3
+ : gcc-4x5-1Mon-14.7.0-alpha.4
+ run_stage_name=Plotting
+ download_latest_gcpy
+ git clone https://github.com/geoschem/gcpy.git --branch dev --depth 1
Cloning into 'gcpy'...
++ pwd
+ export PYTHONPATH=/tmp/tmp.Qe7un2gWnJ/gcpy
+ PYTHONPATH=/tmp/tmp.Qe7un2gWnJ/gcpy
+ devdir=dev-gcc
+ [[ xgcc == \x\g\c\c ]]
+ refdir=ref-gcc
+ mkdir ref-gcc
+ cd ref-gcc
+ download_artifacts gcc-4x5-1Mon-14.7.0-alpha.3
+ artifacts_pk=gcc-4x5-1Mon-14.7.0-alpha.3
++ aws dynamodb get-item --table-name geoschem_testing --key '{"InstanceID": {"S": "gcc-4x5-1Mon-14.7.0-alpha.3"}}' --attributes-to-get Stages --profile=default
++ jq -r '.Item.Stages.L[] | select(.M.Name.S != "CreateBenchmarkPlots") | .M.Artifacts.L[].S'
+ artifacts='s3://benchmarks-cloud/benchmarks/1Mon/gcc/gcc-4x5-1Mon-14.7.0-alpha.3/SetupRunDirectory_RunDirectory.tar.gz
s3://benchmarks-cloud/benchmarks/1Mon/gcc/gcc-4x5-1Mon-14.7.0-alpha.3/RunGCC_OutputDir.tar.gz'
+ for artifact_uri in '${artifacts}'
+ aws s3 cp s3://benchmarks-cloud/benchmarks/1Mon/gcc/gcc-4x5-1Mon-14.7.0-alpha.3/SetupRunDirectory_RunDirectory.tar.gz artifact.tar.gz --only-show-errors
+ tar -xvzf artifact.tar.gz
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+ case ${GEOSCHEM_BENCHMARK_TIME_PERIOD} in
+ export GEOSCHEM_BENCHMARK_PLOTTING_CONFIG_FILE=gcpy/gcpy/benchmark/cloud/template.1mo_benchmark.yml
+ GEOSCHEM_BENCHMARK_PLOTTING_CONFIG_FILE=gcpy/gcpy/benchmark/cloud/template.1mo_benchmark.yml
+ envsubst
+ update_plotting_config_file benchmark.yml
+ filename=benchmark.yml
+ results_dir=dev-gchp
+ case ${GEOSCHEM_BENCHMARK_COMPARISON_TYPE} in
+ sed -i '/gcc_vs_gcc:/{n;s/run: False/run: True/;}' benchmark.yml
+ results_dir=dev-gcc
+ python gcpy/gcpy/benchmark/run_benchmark.py benchmark.yml
Using configuration file benchmark.yml
Using species database /tmp/tmp.Qe7un2gWnJ/dev-gcc/run-directory/species_database.yml
The following plots and tables will be created for FullChemBenchmark
 - Concentration plots
 - Emissions plots
 - Table of emissions totals by species and inventory
 - J-values (photolysis rates) plots
 - Aerosol optical depth plots
 - Drydep velocity plots
 - Table of species mass
 - Table of OH metrics
 - Table of strat-trop exchange
Comparisons will be made for the following combinations:
 - GCC vs GCC

Computing lumped species for full chemistry benchmark
-->Adding lumped species to ref dataset
-->Adding lumped species to dev dataset
Lumped species computation complete.

Using configuration file /tmp/tmp.Qe7un2gWnJ/gcpy/gcpy/benchmark/modules/benchmark_categories.yml
/opt/conda/envs/py39/lib/python3.12/site-packages/cartopy/io/__init__.py:241: DownloadWarning: Downloading: https://naturalearth.s3.amazonaws.com/110m_physical/ne_110m_coastline.zip
  warnings.warn(f'Downloading: {url}', DownloadWarning)

%%% Creating GCC vs. GCC emissions plots %%%
Using configuration file /tmp/tmp.Qe7un2gWnJ/gcpy/gcpy/benchmark/modules/benchmark_categories.yml
Warning: species MGLY has emissions diagnostics but is not in benchmark_categories.yml

%%% Creating GCC vs. GCC emissions & inventory tables %%%
Computing emissions totals for ACR
Computing emissions totals for ACET
Computing emissions totals for ALD2
Computing emissions totals for ALK4
Computing emissions totals for ALK6
Computing emissions totals for BCPI
Computing emissions totals for BCPO
Computing emissions totals for BENZ
Computing emissions totals for BrSALA
Computing emissions totals for BrSALC
Computing emissions totals for C2H2
Computing emissions totals for C2H4
Computing emissions totals for C2H6
Computing emissions totals for C3H8
Computing emissions totals for C4H6
Computing emissions totals for CH2Br2
Computing emissions totals for CH2I2
Computing emissions totals for CH2IBr
Computing emissions totals for CH2ICl
Computing emissions totals for CH2O
Computing emissions totals for CHBr3
Computing emissions totals for CO
Computing emissions totals for DMS
Computing emissions totals for DST1
Computing emissions totals for DST2
Computing emissions totals for DST3
Computing emissions totals for DST4
Computing emissions totals for EOH
Computing emissions totals for ETNO3
Computing emissions totals for FURA
No emissions found for GLYC ... skippping
Computing emissions totals for GLYX
No emissions found for HAC ... skippping
Computing emissions totals for HCl
Computing emissions totals for HCOOH
No emissions found for HNO2 ... skippping
Computing emissions totals for HNO3
Computing emissions totals for ISOP
Computing emissions totals for LIMO
Computing emissions totals for MACR
Computing emissions totals for MEK
Computing emissions totals for MVK
Computing emissions totals for MENO3
Computing emissions totals for MGLY
Computing emissions totals for MOH
Computing emissions totals for MTPA
Computing emissions totals for MTPO
Computing emissions totals for NH3
Computing emissions totals for NO
Computing emissions totals for NO2
Computing emissions totals for O3
Computing emissions totals for OCPI
Computing emissions totals for OCPO
Computing emissions totals for PHEN
Computing emissions totals for PRPE
Computing emissions totals for RCHO
Computing emissions totals for SALA
Computing emissions totals for SALAAL
Computing emissions totals for SALACL
Computing emissions totals for SALC
Computing emissions totals for SALCAL
Computing emissions totals for SALCCL
Computing emissions totals for SO2
Computing emissions totals for SO4
Computing emissions totals for SOAP
Computing emissions totals for SOAS
Computing emissions totals for STYR
Computing emissions totals for TMB
Computing emissions totals for TOLU
Computing emissions totals for XYLE
Computing emissions totals for pFe
Computing inventory totals for AEIC
Computing inventory totals for AFCID
No emissions found for APEI ... skippping
Computing inventory totals for C2H62010
Computing inventory totals for CEDS
Computing inventory totals for CEDSship
Computing inventory totals for DEAD
No emissions found for DICEAfrica ... skippping
Computing inventory totals for GEIAnatural
Computing inventory totals for GFED
Computing inventory totals for GTChlorine
Computing inventory totals for IODINE
Computing inventory totals for LIANG
Computing inventory totals for LIGHTNOX
Computing inventory totals for MEGAN
No emissions found for MIX ... skippping
No emissions found for NEI2011 ... skippping
Computing inventory totals for ORDONEZ
Computing inventory totals for PARANOX
Computing inventory totals for PLANTDECAY
Computing inventory totals for SEABIRDS
Computing inventory totals for SeaFlux
Computing inventory totals for SeaSalt
Computing inventory totals for SOILNOX
Computing inventory totals for VOLCANOdegas
Computing inventory totals for VOLCANOerupt
Computing inventory totals for XIAO

%%% Creating GCC vs. GCC J-value plots %%%

%%% Creating GCC vs. GCC column AOD plots %%%

%%% Creating GCC vs. GCC drydep plots %%%

%%% Creating GCC vs. GCC global mass tables %%%

%%% Creating GCC vs. GCC OH metrics table %%%

%%% Creating GCC dev Strat-Trop Exchange table %%%

%%% Creating GCC vs. GCC Benchmark Timing table %%%

%%% Creating GCC vs. GCC summary table %%%

%%% Creating GCC vs. GCC sanity_check table %%%

%%%% All requested benchmark plots/tables created! %%%%
+ mv dev-gcc/run-directory/BenchmarkResults BenchmarkResults
++ find BenchmarkResults -type f
+ files='BenchmarkResults/run_benchmark.py
BenchmarkResults/benchmark.yml
BenchmarkResults/lumped_species.yml
BenchmarkResults/benchmark_categories.yml
BenchmarkResults/Aerosols/Aerosols_Surface.pdf
BenchmarkResults/Aerosols/Aerosols_500hPa.pdf
BenchmarkResults/Aerosols/Aerosols_FullColumn_ZonalMean.pdf
BenchmarkResults/Aerosols/Aerosols_Strat_ZonalMean.pdf
BenchmarkResults/Aerosols/Aerosols_Emissions.pdf
BenchmarkResults/Aerosols/Aerosols_ColumnOptDepth.pdf
BenchmarkResults/Bromine/Bromine_Surface.pdf
BenchmarkResults/Bromine/Bromine_500hPa.pdf
BenchmarkResults/Bromine/Bromine_FullColumn_ZonalMean.pdf
BenchmarkResults/Bromine/Bromine_Strat_ZonalMean.pdf
BenchmarkResults/Bromine/Bromine_Emissions.pdf
BenchmarkResults/Chlorine/Chlorine_Surface.pdf
BenchmarkResults/Chlorine/Chlorine_500hPa.pdf
BenchmarkResults/Chlorine/Chlorine_FullColumn_ZonalMean.pdf
BenchmarkResults/Chlorine/Chlorine_Strat_ZonalMean.pdf
BenchmarkResults/Chlorine/Chlorine_Emissions.pdf
BenchmarkResults/Iodine/Iodine_Surface.pdf
BenchmarkResults/Iodine/Iodine_500hPa.pdf
BenchmarkResults/Iodine/Iodine_FullColumn_ZonalMean.pdf
BenchmarkResults/Iodine/Iodine_Strat_ZonalMean.pdf
BenchmarkResults/Iodine/Iodine_Emissions.pdf
BenchmarkResults/Nitrogen/Nitrogen_Surface.pdf
BenchmarkResults/Nitrogen/Nitrogen_500hPa.pdf
BenchmarkResults/Nitrogen/Nitrogen_FullColumn_ZonalMean.pdf
BenchmarkResults/Nitrogen/Nitrogen_Strat_ZonalMean.pdf
BenchmarkResults/Nitrogen/Nitrogen_Emissions.pdf
BenchmarkResults/Oxidants/Oxidants_Surface.pdf
BenchmarkResults/Oxidants/Oxidants_500hPa.pdf
BenchmarkResults/Oxidants/Oxidants_FullColumn_ZonalMean.pdf
BenchmarkResults/Oxidants/Oxidants_Strat_ZonalMean.pdf
BenchmarkResults/Oxidants/Oxidants_Emissions.pdf
BenchmarkResults/Primary_Organics/Primary_Organics_Surface.pdf
BenchmarkResults/Primary_Organics/Primary_Organics_500hPa.pdf
BenchmarkResults/Primary_Organics/Primary_Organics_FullColumn_ZonalMean.pdf
BenchmarkResults/Primary_Organics/Primary_Organics_Strat_ZonalMean.pdf
BenchmarkResults/Primary_Organics/Primary_Organics_Emissions.pdf
BenchmarkResults/ROy/ROy_Surface.pdf
BenchmarkResults/ROy/ROy_500hPa.pdf
BenchmarkResults/ROy/ROy_FullColumn_ZonalMean.pdf
BenchmarkResults/ROy/ROy_Strat_ZonalMean.pdf
BenchmarkResults/ROy/ROy_Emissions.pdf
BenchmarkResults/Secondary_Organic_Aerosols/Secondary_Organic_Aerosols_Surface.pdf
BenchmarkResults/Secondary_Organic_Aerosols/Secondary_Organic_Aerosols_500hPa.pdf
BenchmarkResults/Secondary_Organic_Aerosols/Secondary_Organic_Aerosols_FullColumn_ZonalMean.pdf
BenchmarkResults/Secondary_Organic_Aerosols/Secondary_Organic_Aerosols_Strat_ZonalMean.pdf
BenchmarkResults/Secondary_Organic_Aerosols/Secondary_Organic_Aerosols_Emissions.pdf
BenchmarkResults/Secondary_Organics/Secondary_Organics_Surface.pdf
BenchmarkResults/Secondary_Organics/Secondary_Organics_500hPa.pdf
BenchmarkResults/Secondary_Organics/Secondary_Organics_FullColumn_ZonalMean.pdf
BenchmarkResults/Secondary_Organics/Secondary_Organics_Strat_ZonalMean.pdf
BenchmarkResults/Secondary_Organics/Secondary_Organics_Emissions.pdf
BenchmarkResults/Sulfur/Sulfur_Surface.pdf
BenchmarkResults/Sulfur/Sulfur_500hPa.pdf
BenchmarkResults/Sulfur/Sulfur_FullColumn_ZonalMean.pdf
BenchmarkResults/Sulfur/Sulfur_Strat_ZonalMean.pdf
BenchmarkResults/Sulfur/Sulfur_Emissions.pdf
BenchmarkResults/SigDiffs_sfc.txt
BenchmarkResults/SigDiffs_500hpa.txt
BenchmarkResults/SigDiffs_zonalmean.txt
BenchmarkResults/Emissions/Lightning_Emissions.pdf
BenchmarkResults/Emissions/Fert_Emissions.pdf
BenchmarkResults/Emissions/Seabirds_Emissions.pdf
BenchmarkResults/Emissions/VolcDegas_Emissions.pdf
BenchmarkResults/Emissions/VolcErupt_Emissions.pdf
BenchmarkResults/Emissions/Soil_Emissions.pdf
BenchmarkResults/Emissions/PlantDecay_Emissions.pdf
BenchmarkResults/Emissions/Biogenic_Emissions.pdf
BenchmarkResults/Emissions/Ocean_Emissions.pdf
BenchmarkResults/Emissions/Natural_Emissions.pdf
BenchmarkResults/Emissions/Aircraft_Emissions.pdf
BenchmarkResults/Emissions/Anthro_Emissions.pdf
BenchmarkResults/Emissions/Ship_Emissions.pdf
BenchmarkResults/Emissions/BioBurn_Emissions.pdf
BenchmarkResults/Emissions/Total_Emissions.pdf
BenchmarkResults/SigDiffs_emissions.txt
BenchmarkResults/Tables/Emission_totals.txt
BenchmarkResults/Tables/Inventory_totals.txt
BenchmarkResults/Tables/GlobalMass_TropStrat.txt
BenchmarkResults/Tables/GlobalMass_Trop.txt
BenchmarkResults/Tables/OH_metrics.txt
BenchmarkResults/Tables/Strat_trop_exchange.gcc-4x5-1Mon-14.7.0-alpha.4.txt
BenchmarkResults/Tables/Benchmark_Timers_gcc-4x5-1Mon-14.7.0-alpha.3_vs_gcc-4x5-1Mon-14.7.0-alpha.4.txt
BenchmarkResults/Tables/Summary.txt
BenchmarkResults/Tables/Diagnostic_Sanity_Check.txt
BenchmarkResults/JValues/Jval_Surface.pdf
BenchmarkResults/JValues/Jval_500hPa.pdf
BenchmarkResults/JValues/Jval_FullColumn_ZonalMean.pdf
BenchmarkResults/JValues/Jval_Strat_ZonalMean.pdf
BenchmarkResults/DryDep/DryDep_Surface.pdf'
+ upload_public_artifacts BenchmarkResults/run_benchmark.py BenchmarkResults/benchmark.yml BenchmarkResults/lumped_species.yml BenchmarkResults/benchmark_categories.yml BenchmarkResults/Aerosols/Aerosols_Surface.pdf BenchmarkResults/Aerosols/Aerosols_500hPa.pdf BenchmarkResults/Aerosols/Aerosols_FullColumn_ZonalMean.pdf BenchmarkResults/Aerosols/Aerosols_Strat_ZonalMean.pdf BenchmarkResults/Aerosols/Aerosols_Emissions.pdf BenchmarkResults/Aerosols/Aerosols_ColumnOptDepth.pdf BenchmarkResults/Bromine/Bromine_Surface.pdf BenchmarkResults/Bromine/Bromine_500hPa.pdf BenchmarkResults/Bromine/Bromine_FullColumn_ZonalMean.pdf BenchmarkResults/Bromine/Bromine_Strat_ZonalMean.pdf BenchmarkResults/Bromine/Bromine_Emissions.pdf BenchmarkResults/Chlorine/Chlorine_Surface.pdf BenchmarkResults/Chlorine/Chlorine_500hPa.pdf BenchmarkResults/Chlorine/Chlorine_FullColumn_ZonalMean.pdf BenchmarkResults/Chlorine/Chlorine_Strat_ZonalMean.pdf BenchmarkResults/Chlorine/Chlorine_Emissions.pdf BenchmarkResults/Iodine/Iodine_Surface.pdf BenchmarkResults/Iodine/Iodine_500hPa.pdf BenchmarkResults/Iodine/Iodine_FullColumn_ZonalMean.pdf BenchmarkResults/Iodine/Iodine_Strat_ZonalMean.pdf BenchmarkResults/Iodine/Iodine_Emissions.pdf BenchmarkResults/Nitrogen/Nitrogen_Surface.pdf BenchmarkResults/Nitrogen/Nitrogen_500hPa.pdf BenchmarkResults/Nitrogen/Nitrogen_FullColumn_ZonalMean.pdf BenchmarkResults/Nitrogen/Nitrogen_Strat_ZonalMean.pdf BenchmarkResults/Nitrogen/Nitrogen_Emissions.pdf BenchmarkResults/Oxidants/Oxidants_Surface.pdf BenchmarkResults/Oxidants/Oxidants_500hPa.pdf BenchmarkResults/Oxidants/Oxidants_FullColumn_ZonalMean.pdf BenchmarkResults/Oxidants/Oxidants_Strat_ZonalMean.pdf BenchmarkResults/Oxidants/Oxidants_Emissions.pdf BenchmarkResults/Primary_Organics/Primary_Organics_Surface.pdf BenchmarkResults/Primary_Organics/Primary_Organics_500hPa.pdf BenchmarkResults/Primary_Organics/Primary_Organics_FullColumn_ZonalMean.pdf BenchmarkResults/Primary_Organics/Primary_Organics_Strat_ZonalMean.pdf BenchmarkResults/Primary_Organics/Primary_Organics_Emissions.pdf BenchmarkResults/ROy/ROy_Surface.pdf BenchmarkResults/ROy/ROy_500hPa.pdf BenchmarkResults/ROy/ROy_FullColumn_ZonalMean.pdf BenchmarkResults/ROy/ROy_Strat_ZonalMean.pdf BenchmarkResults/ROy/ROy_Emissions.pdf BenchmarkResults/Secondary_Organic_Aerosols/Secondary_Organic_Aerosols_Surface.pdf BenchmarkResults/Secondary_Organic_Aerosols/Secondary_Organic_Aerosols_500hPa.pdf BenchmarkResults/Secondary_Organic_Aerosols/Secondary_Organic_Aerosols_FullColumn_ZonalMean.pdf BenchmarkResults/Secondary_Organic_Aerosols/Secondary_Organic_Aerosols_Strat_ZonalMean.pdf BenchmarkResults/Secondary_Organic_Aerosols/Secondary_Organic_Aerosols_Emissions.pdf BenchmarkResults/Secondary_Organics/Secondary_Organics_Surface.pdf BenchmarkResults/Secondary_Organics/Secondary_Organics_500hPa.pdf BenchmarkResults/Secondary_Organics/Secondary_Organics_FullColumn_ZonalMean.pdf BenchmarkResults/Secondary_Organics/Secondary_Organics_Strat_ZonalMean.pdf BenchmarkResults/Secondary_Organics/Secondary_Organics_Emissions.pdf BenchmarkResults/Sulfur/Sulfur_Surface.pdf BenchmarkResults/Sulfur/Sulfur_500hPa.pdf BenchmarkResults/Sulfur/Sulfur_FullColumn_ZonalMean.pdf BenchmarkResults/Sulfur/Sulfur_Strat_ZonalMean.pdf BenchmarkResults/Sulfur/Sulfur_Emissions.pdf BenchmarkResults/SigDiffs_sfc.txt BenchmarkResults/SigDiffs_500hpa.txt BenchmarkResults/SigDiffs_zonalmean.txt BenchmarkResults/Emissions/Lightning_Emissions.pdf BenchmarkResults/Emissions/Fert_Emissions.pdf BenchmarkResults/Emissions/Seabirds_Emissions.pdf BenchmarkResults/Emissions/VolcDegas_Emissions.pdf BenchmarkResults/Emissions/VolcErupt_Emissions.pdf BenchmarkResults/Emissions/Soil_Emissions.pdf BenchmarkResults/Emissions/PlantDecay_Emissions.pdf BenchmarkResults/Emissions/Biogenic_Emissions.pdf BenchmarkResults/Emissions/Ocean_Emissions.pdf BenchmarkResults/Emissions/Natural_Emissions.pdf BenchmarkResults/Emissions/Aircraft_Emissions.pdf BenchmarkResults/Emissions/Anthro_Emissions.pdf BenchmarkResults/Emissions/Ship_Emissions.pdf BenchmarkResults/Emissions/BioBurn_Emissions.pdf BenchmarkResults/Emissions/Total_Emissions.pdf BenchmarkResults/SigDiffs_emissions.txt BenchmarkResults/Tables/Emission_totals.txt BenchmarkResults/Tables/Inventory_totals.txt BenchmarkResults/Tables/GlobalMass_TropStrat.txt BenchmarkResults/Tables/GlobalMass_Trop.txt BenchmarkResults/Tables/OH_metrics.txt BenchmarkResults/Tables/Strat_trop_exchange.gcc-4x5-1Mon-14.7.0-alpha.4.txt BenchmarkResults/Tables/Benchmark_Timers_gcc-4x5-1Mon-14.7.0-alpha.3_vs_gcc-4x5-1Mon-14.7.0-alpha.4.txt BenchmarkResults/Tables/Summary.txt BenchmarkResults/Tables/Diagnostic_Sanity_Check.txt BenchmarkResults/JValues/Jval_Surface.pdf BenchmarkResults/JValues/Jval_500hPa.pdf BenchmarkResults/JValues/Jval_FullColumn_ZonalMean.pdf BenchmarkResults/JValues/Jval_Strat_ZonalMean.pdf BenchmarkResults/DryDep/DryDep_Surface.pdf
+ for filename in '$@'
+ uri=s3://benchmarks-cloud/diff-plots/1Mon/diff-gcc-4x5-1Mon-14.7.0-alpha.3-gcc-4x5-1Mon-14.7.0-alpha.4/BenchmarkResults/run_benchmark.py
++ echo s3://benchmarks-cloud/diff-plots/1Mon/diff-gcc-4x5-1Mon-14.7.0-alpha.3-gcc-4x5-1Mon-14.7.0-alpha.4/BenchmarkResults/run_benchmark.py
++ sed s#s3://#http://s3.amazonaws.com/#
+ url=http://s3.amazonaws.com/benchmarks-cloud/diff-plots/1Mon/diff-gcc-4x5-1Mon-14.7.0-alpha.3-gcc-4x5-1Mon-14.7.0-alpha.4/BenchmarkResults/run_benchmark.py
+ aws s3 cp BenchmarkResults/run_benchmark.py s3://benchmarks-cloud/diff-plots/1Mon/diff-gcc-4x5-1Mon-14.7.0-alpha.3-gcc-4x5-1Mon-14.7.0-alpha.4/BenchmarkResults/run_benchmark.py --only-show-errors --acl public-read
++ echo '{
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++ jq '.M.PublicArtifacts.L[.M.PublicArtifacts.L | length] |= . + {"S": "http://s3.amazonaws.com/benchmarks-cloud/diff-plots/1Mon/diff-gcc-4x5-1Mon-14.7.0-alpha.3-gcc-4x5-1Mon-14.7.0-alpha.4/BenchmarkResults/run_benchmark.py"}'
+ stage_json='{
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+ for filename in '$@'
+ uri=s3://benchmarks-cloud/diff-plots/1Mon/diff-gcc-4x5-1Mon-14.7.0-alpha.3-gcc-4x5-1Mon-14.7.0-alpha.4/BenchmarkResults/benchmark.yml
++ echo s3://benchmarks-cloud/diff-plots/1Mon/diff-gcc-4x5-1Mon-14.7.0-alpha.3-gcc-4x5-1Mon-14.7.0-alpha.4/BenchmarkResults/benchmark.yml
++ sed s#s3://#http://s3.amazonaws.com/#
+ url=http://s3.amazonaws.com/benchmarks-cloud/diff-plots/1Mon/diff-gcc-4x5-1Mon-14.7.0-alpha.3-gcc-4x5-1Mon-14.7.0-alpha.4/BenchmarkResults/benchmark.yml
+ aws s3 cp BenchmarkResults/benchmark.yml s3://benchmarks-cloud/diff-plots/1Mon/diff-gcc-4x5-1Mon-14.7.0-alpha.3-gcc-4x5-1Mon-14.7.0-alpha.4/BenchmarkResults/benchmark.yml --only-show-errors --acl public-read
++ echo '{
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++ jq '.M.PublicArtifacts.L[.M.PublicArtifacts.L | length] |= . + {"S": "http://s3.amazonaws.com/benchmarks-cloud/diff-plots/1Mon/diff-gcc-4x5-1Mon-14.7.0-alpha.3-gcc-4x5-1Mon-14.7.0-alpha.4/BenchmarkResults/benchmark.yml"}'
+ stage_json='{
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++ echo s3://benchmarks-cloud/diff-plots/1Mon/diff-gcc-4x5-1Mon-14.7.0-alpha.3-gcc-4x5-1Mon-14.7.0-alpha.4/BenchmarkResults/Secondary_Organic_Aerosols/Secondary_Organic_Aerosols_Strat_ZonalMean.pdf
++ sed s#s3://#http://s3.amazonaws.com/#
+ url=http://s3.amazonaws.com/benchmarks-cloud/diff-plots/1Mon/diff-gcc-4x5-1Mon-14.7.0-alpha.3-gcc-4x5-1Mon-14.7.0-alpha.4/BenchmarkResults/Secondary_Organic_Aerosols/Secondary_Organic_Aerosols_Strat_ZonalMean.pdf
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+ for filename in '$@'
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}'
+ update_status SUCCESSFUL
+ new_status=SUCCESSFUL
+ aws dynamodb update-item --table-name geoschem_testing --key '{"InstanceID":{"S":"diff-gcc-4x5-1Mon-14.7.0-alpha.3-gcc-4x5-1Mon-14.7.0-alpha.4"}}' --update-expression 'SET ExecStatus = :v' --expression-attribute-values '{":v": {"S":"SUCCESSFUL"}}' --profile=default
+ upload_log_file CreateBenchmarkPlots.txt
+ log_file_name=CreateBenchmarkPlots.txt
+ log_file_uri=s3://benchmarks-cloud/diff-plots/1Mon/diff-gcc-4x5-1Mon-14.7.0-alpha.3-gcc-4x5-1Mon-14.7.0-alpha.4/CreateBenchmarkPlots.txt
++ echo s3://benchmarks-cloud/diff-plots/1Mon/diff-gcc-4x5-1Mon-14.7.0-alpha.3-gcc-4x5-1Mon-14.7.0-alpha.4/CreateBenchmarkPlots.txt
++ sed s#s3://#http://s3.amazonaws.com/#
+ log_file_url=http://s3.amazonaws.com/benchmarks-cloud/diff-plots/1Mon/diff-gcc-4x5-1Mon-14.7.0-alpha.3-gcc-4x5-1Mon-14.7.0-alpha.4/CreateBenchmarkPlots.txt
+ aws s3 cp CreateBenchmarkPlots.txt s3://benchmarks-cloud/diff-plots/1Mon/diff-gcc-4x5-1Mon-14.7.0-alpha.3-gcc-4x5-1Mon-14.7.0-alpha.4/CreateBenchmarkPlots.txt --only-show-errors --acl public-read